Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001382

Physical Location & Seq

Genomic Coordinates Reverse (-)

5150369 .. 5151820

Gene Structure 1452 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0059100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGCAAAAGAAAAGAGATAATAGTAAGGGAAAGGTAGATAACTCTGAAGAGGCGCTAGCTACTCTACCCTTATCAGTTCTTCGAAGTTTTTGGATCTACCATGTGTCCTTCCTTTGGAGATATATGAAGTACATGATATACAAGAAACACTACCCACCTGTGCTAACTGATGAGGTTTGGAGATTGGAGAAAATTGGAAAAGATGGGTCATTTCACAAGAGACTGAATAAGGCCGGAGTCCTTTCTGTTGAACACTTCCTACGACTGCGGAATGTCTATGTCGACGGTTTGGTGGAGAAGGCGTATGAAAACTGGATGCATGTTATAGGGTATGATGGAAAGTCTCTTCTAAACTTCAAGCAGCAGAAGGGTCCAGTTACCTCTCAACTTGAGGTTCCCATGCCTTCGCAGGAGTATACAAACTCATTTAACCAGCAGTTCACGCTACCTAGCCTGCCGGTTCCTTCAGAGCATAATATTATGGATCCTGGATTTATTGCGGAAGGTAGGAGTGGAAGGGGAATACCTTGGATTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030490 GO:0030684 GO:0030688 GO:0031323 GO:0031325 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0034708 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090070 GO:0090304 GO:1901360 GO:1902494 GO:1990234 GO:1990904 GO:2000232 GO:2000234

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RIO1

Protein Analysis

179

Amino Acids

20.79

Weight (kDa)

9.42

Isoelectric Point (pI)

55.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Calmod_bind_M	PF20451	55 - 97	5.6e-15	Calmodulin binding protein central domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001382)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24990 AT5G37350 AT5G37350
fragaria_vesca	FvH4_5g08310 FvH4_5g08310 FvH4_5g08310 FvH4_5g16770 FvH4_5g16770 FvH4_5g16770 FvH4_5g25261
malus_domestica	MD06G1142000.v1.1 MD14G1157300.v1.1
prunus_persica	Prupe.5G151200_v2.0.a1
pyrus_communis	pycom06g13180 pycom14g13080
rosa_chinensis	RchiOBHm_Chr5g0020401 RchiOBHm_Chr5g0063241 RchiOBHm_Chr5g0063291 RchiOBHm_Chr7g0190211
rosa_laevigata	RLG00000004553 RLG00000032520 RLG00000035614 RLG00000035619
rosa_multiflora	Rmu_sc0000033.1_g000014 Rmu_sc0004886.1_g000019 Rmu_sc0005045.1_g000016
rosa_roxburghii	Rroxscaffold_1G00017410 Rroxscaffold_1G00017420 Rroxscaffold_1G00017470 Rroxscaffold_3G00264780
rosa_rugosa	Rorug05G0058900 Rorug05G0058900 Rorug05G0059000 Rorug05G0059100 Rorug05G0355500 Rorug06G0503000
rosa_samantha	Rh5AG149600 Rh5AG415200 Rh5AG415300 Rh5AG415500 Rh5BG149000 Rh5BG430400 Rh5CG160500 Rh5CG453800 Rh5DG147800 Rh5DG444000 Rh7AG108300 Rh7BG110900 Rh7CG113300 Rh7DG111700
rosa_wichuraiana	Rw5G013250 Rw5G039050 Rw7G009390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	282, 416
AciI	CCGC	2 cut(s)	268, 500
AclWI	GGATC	3 cut(s)	101, 479, 492
AcuI	CTGAAG	2 cut(s)	66, 450
AfaI	GTAC	1 cut(s)	131
AfiI	CCNNNNNNNGG	2 cut(s)	114, 533
AgsI	TTSAA	2 cut(s)	251, 358
AjnI	CCWGG	1 cut(s)	487
AluBI	AGCT	1 cut(s)	59
AluI	AGCT	1 cut(s)	59
Alw26I	GTCTC	2 cut(s)	214, 348
AlwI	GGATC	3 cut(s)	101, 479, 492
AoxI	GGCC	1 cut(s)	231
ApeKI	GCWGC	1 cut(s)	361
AspLEI	GCGC	1 cut(s)	55
AspS9I	GGNCC	1 cut(s)	371
AsuII	TTCGAA	1 cut(s)	82
AsuNHI	GCTAGC	1 cut(s)	55
AvaII	GGWCC	1 cut(s)	371
BamHI	GGATCC	1 cut(s)	484
BbvI	GCAGC	1 cut(s)	373
BccI	CCATC	2 cut(s)	197, 329
BciT130I	CCWGG	1 cut(s)	489
BcoDI	GTCTC	2 cut(s)	214, 348
BfaI	CTAG	2 cut(s)	56, 450
BfoI	RGCGCY	1 cut(s)	56
BisI	GCNGC	1 cut(s)	362
BlsI	GCNGC	1 cut(s)	363
Bme1390I	CCNGG	1 cut(s)	489
Bme18I	GGWCC	1 cut(s)	371
BmgT120I	GGNCC	1 cut(s)	371
BmiI	GGNNCC	4 cut(s)	372, 396, 462, 486
BmrFI	CCNGG	1 cut(s)	489
BmsI	GCATC	1 cut(s)	306
BmtI	GCTAGC	1 cut(s)	59
Bpu14I	TTCGAA	1 cut(s)	82
BpuEI	CTTGAG	1 cut(s)	410
BsaJI	CCNNGG	1 cut(s)	527
BsaXI	ACNNNNNCTCC	2 cut(s)	287, 317
Bsc4I	CCNNNNNNNGG	2 cut(s)	114, 533
Bse118I	RCCGGY	1 cut(s)	457
Bse1I	ACTGG	2 cut(s)	317, 374
BseBI	CCWGG	1 cut(s)	489
BseDI	CCNNGG	1 cut(s)	527
BseGI	GGATG	1 cut(s)	321
BseLI	CCNNNNNNNGG	2 cut(s)	114, 533
BseNI	ACTGG	2 cut(s)	317, 374
BseXI	GCAGC	1 cut(s)	373
BshFI	GGCC	1 cut(s)	233
BsiSI	CCGG	2 cut(s)	234, 458
BslI	CCNNNNNNNGG	2 cut(s)	114, 533
BsmAI	GTCTC	2 cut(s)	214, 348
BsnI	GGCC	1 cut(s)	233
Bsp119I	TTCGAA	1 cut(s)	82
Bsp143I	GATC	2 cut(s)	93, 484
BspACI	CCGC	2 cut(s)	268, 500
BspANI	GGCC	1 cut(s)	233
BspLI	GGNNCC	4 cut(s)	372, 396, 462, 486
BspOI	GCTAGC	1 cut(s)	59
BspPI	GGATC	3 cut(s)	101, 479, 492
BspT104I	TTCGAA	1 cut(s)	82
BsrFI	RCCGGY	1 cut(s)	457
BsrI	ACTGG	2 cut(s)	317, 374
BssAI	RCCGGY	1 cut(s)	457
BssECI	CCNNGG	1 cut(s)	527
BssMI	GATC	2 cut(s)	93, 484
BssNAI	GTATAC	1 cut(s)	417
BssT1I	CCWWGG	1 cut(s)	527
Bst1107I	GTATAC	1 cut(s)	417
Bst2UI	CCWGG	1 cut(s)	489
Bst4CI	ACNGT	1 cut(s)	287
Bst6I	CTCTTC	2 cut(s)	42, 351
BstBI	TTCGAA	1 cut(s)	82
BstC8I	GCNNGC	2 cut(s)	57, 455
BstF5I	GGATG	1 cut(s)	321
BstH2I	RGCGCY	1 cut(s)	56
BstHHI	GCGC	1 cut(s)	55
BstKTI	GATC	2 cut(s)	96, 487
BstMAI	GTCTC	2 cut(s)	214, 348
BstMBI	GATC	2 cut(s)	93, 484
BstMWI	GCNNNNNNNGC	1 cut(s)	442
BstNI	CCWGG	1 cut(s)	489
BstNSI	RCATGY	1 cut(s)	323
BstSCI	CCNGG	1 cut(s)	487
BstV1I	GCAGC	1 cut(s)	373
BstX2I	RGATCY	2 cut(s)	93, 484
BstYI	RGATCY	2 cut(s)	93, 484
BstZ17I	GTATAC	1 cut(s)	417
BsuRI	GGCC	1 cut(s)	233
BtsCI	GGATG	1 cut(s)	321
Cac8I	GCNNGC	2 cut(s)	57, 455
CfoI	GCGC	1 cut(s)	55
Cfr10I	RCCGGY	1 cut(s)	457
Cfr13I	GGNCC	1 cut(s)	371
Csp6I	GTAC	1 cut(s)	130
CviAII	CATG	4 cut(s)	101, 133, 320, 400
CviJI	RGCY	3 cut(s)	59, 233, 453
CviKI_1	RGCY	3 cut(s)	59, 233, 453
CviQI	GTAC	1 cut(s)	130
DpnI	GATC	2 cut(s)	95, 486
DpnII	GATC	2 cut(s)	93, 484
Eam1104I	CTCTTC	2 cut(s)	42, 351
EarI	CTCTTC	2 cut(s)	42, 351
Eco130I	CCWWGG	1 cut(s)	527
Eco47I	GGWCC	1 cut(s)	371
Eco57I	CTGAAG	2 cut(s)	66, 450
EcoRII	CCWGG	1 cut(s)	487
EcoT14I	CCWWGG	1 cut(s)	527
EcoT22I	ATGCAT	1 cut(s)	321
ErhI	CCWWGG	1 cut(s)	527
FaeI	CATG	4 cut(s)	104, 136, 323, 403
FatI	CATG	4 cut(s)	100, 132, 319, 399
FblI	GTMKAC	2 cut(s)	282, 416
Fnu4HI	GCNGC	1 cut(s)	362
FokI	GGATG	1 cut(s)	328
Fsp4HI	GCNGC	1 cut(s)	362
FspBI	CTAG	2 cut(s)	56, 450
GlaI	GCGC	1 cut(s)	54
GluI	GCNGC	1 cut(s)	362
HaeII	RGCGCY	1 cut(s)	56
HaeIII	GGCC	1 cut(s)	233
HapII	CCGG	2 cut(s)	234, 458
HhaI	GCGC	1 cut(s)	55
Hin1II	CATG	4 cut(s)	104, 136, 323, 403
Hin6I	GCGC	1 cut(s)	53
HinP1I	GCGC	1 cut(s)	53
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HinfI	GANTC	1 cut(s)	237
HpaII	CCGG	2 cut(s)	234, 458
Hpy166II	GTNNAC	3 cut(s)	283, 417, 441
Hpy188I	TCNGA	2 cut(s)	46, 469
Hpy8I	GTNNAC	3 cut(s)	283, 417, 441
Hpy99I	CGWCG	1 cut(s)	287
HpyAV	CCTTC	7 cut(s)	118, 292, 361, 414, 474, 497, 510
HpyCH4III	ACNGT	1 cut(s)	287
HpyCH4V	TGCA	2 cut(s)	4, 319
HpyF10VI	GCNNNNNNNGC	1 cut(s)	442
Hsp92II	CATG	4 cut(s)	104, 136, 323, 403
HspAI	GCGC	1 cut(s)	53
Kzo9I	GATC	2 cut(s)	93, 484
Lsp1109I	GCAGC	1 cut(s)	373
LweI	GCATC	1 cut(s)	306
MaeI	CTAG	2 cut(s)	56, 450
MaeIII	GTNAC	1 cut(s)	376
MalI	GATC	2 cut(s)	95, 486
MboI	GATC	2 cut(s)	93, 484
MboII	GAAGA	3 cut(s)	59, 71, 338
MflI	RGATCY	2 cut(s)	93, 484
MluCI	AATT	1 cut(s)	192
MlyI	GAGTC	1 cut(s)	246
MnlI	CCTC	4 cut(s)	43, 166, 385, 391
Mph1103I	ATGCAT	1 cut(s)	321
MseI	TTAA	1 cut(s)	429
MspI	CCGG	2 cut(s)	234, 458
MspR9I	CCNGG	1 cut(s)	489
MvaI	CCWGG	1 cut(s)	489
MwoI	GCNNNNNNNGC	1 cut(s)	442
NdeII	GATC	2 cut(s)	93, 484
NheI	GCTAGC	1 cut(s)	55
NlaIII	CATG	4 cut(s)	104, 136, 323, 403
NlaIV	GGNNCC	4 cut(s)	372, 396, 462, 486
NsiI	ATGCAT	1 cut(s)	321
NspI	RCATGY	1 cut(s)	323
NspV	TTCGAA	1 cut(s)	82
PfoI	TCCNGGA	1 cut(s)	487
PkrI	GCNGC	1 cut(s)	363
PleI	GAGTC	1 cut(s)	245
PpsI	GAGTC	1 cut(s)	245
Psp6I	CCWGG	1 cut(s)	487
PspGI	CCWGG	1 cut(s)	487
PspN4I	GGNNCC	4 cut(s)	372, 396, 462, 486
PspPI	GGNCC	1 cut(s)	371
PsrI	GAACNNNNNNTAC	2 cut(s)	243, 275
PsuI	RGATCY	2 cut(s)	93, 484
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
SalI	GTCGAC	1 cut(s)	281
SaqAI	TTAA	1 cut(s)	429
SatI	GCNGC	1 cut(s)	362
Sau3AI	GATC	2 cut(s)	93, 484
Sau96I	GGNCC	1 cut(s)	371
SchI	GAGTC	1 cut(s)	246
ScrFI	CCNGG	1 cut(s)	489
SetI	ASST	9 cut(s)	36, 61, 160, 177, 383, 396, 451, 508, 529
SfaNI	GCATC	1 cut(s)	306
SfuI	TTCGAA	1 cut(s)	82
SinI	GGWCC	1 cut(s)	371
SmlI	CTYRAG	1 cut(s)	389
SmoI	CTYRAG	1 cut(s)	389
Sse9I	AATT	1 cut(s)	192
SsiI	CCGC	2 cut(s)	268, 500
SspI	AATATT	1 cut(s)	478
SspMI	CTAG	2 cut(s)	56, 450
StyD4I	CCNGG	1 cut(s)	487
StyI	CCWWGG	1 cut(s)	527
TaaI	ACNGT	1 cut(s)	287
TaqI	TCGA	2 cut(s)	82, 282
TasI	AATT	1 cut(s)	192
TatI	WGTACW	1 cut(s)	129
Tru1I	TTAA	1 cut(s)	429
Tru9I	TTAA	1 cut(s)	429
TseI	GCWGC	1 cut(s)	361
TspDTI	ATGAA	2 cut(s)	140, 321
VpaK11BI	GGWCC	1 cut(s)	371
XceI	RCATGY	1 cut(s)	323
XmiI	GTMKAC	2 cut(s)	282, 416
XspI	CTAG	2 cut(s)	56, 450
Zsp2I	ATGCAT	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.