Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005045.1

Orthogroup ID

OG0001382

Physical Location & Seq

Genomic Coordinates Reverse (-)

40052 .. 43785

Gene Structure 3734 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005045.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

atggctgatgttgctgaagaaggattagagaagtcccttgaaggagaagacgaaccgaacttggactcatgcgggggctgtaggtgtggctgttgctggtcactactatggtcgtcatcagactcagacacccaacaagatgtcgactcttttgattccgaggaggacgatgatgaagcccttaaagcgtgttttccaatcaactatgctagccagcgacccaatgctcatggaggcctacactctcgccctaataactccaaccttcgtcatttctctaacctcgtcagactttcgcctctagagggttttgatcttacaacatgtttggctatgcggaaactgcacaatcgcggtgaatatgagtttatccatggctgcatttctacggggaaagatggttttgatcttacaacatgtttggctatgcggaaactgcacaatcgcggtgaatatgagtttatccatggctgcatttctacggggaaagatgcaaatgtttattacgcaacaagatctgatggccaacaagatgtgtgttacccaacaagatctggtgaccaggacctggctatcaaagtgtacaaaacatctgttatgggttttaagcacagaggtggatatgtacaaggggactaccgattcagacatgaatacagtgggcacaatcccaggaaacaggtgagcaaatgggttgagaaagagtggaggaatctgaagaggataaaggaagctggaatcagatgcccaactgcatatgactttggacctattgttctggtcatggaattcatagctccacttgagaccaattctgatgaagaaaactcaagcgatttagattcctcatctggaatcaaggcacagaacaagaaggttgcgagaaaatatttcaagaagaaagtcaaagaagtgaagatggaatctcggaaacatgaattgcaaaagcgcccaaaggctgtaaagaaaagaaagaagaggctgtcggaaccttgcaggaccaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030490 GO:0030684 GO:0030688 GO:0031323 GO:0031325 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0034708 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090070 GO:0090304 GO:1901360 GO:1902494 GO:1990234 GO:1990904 GO:2000232 GO:2000234

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RIO1

Protein Analysis

335

Amino Acids

38.17

Weight (kDa)

8.46

Isoelectric Point (pI)

43.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001382)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24990 AT5G37350 AT5G37350
fragaria_vesca	FvH4_5g08310 FvH4_5g08310 FvH4_5g08310 FvH4_5g16770 FvH4_5g16770 FvH4_5g16770 FvH4_5g25261
malus_domestica	MD06G1142000.v1.1 MD14G1157300.v1.1
prunus_persica	Prupe.5G151200_v2.0.a1
pyrus_communis	pycom06g13180 pycom14g13080
rosa_chinensis	RchiOBHm_Chr5g0020401 RchiOBHm_Chr5g0063241 RchiOBHm_Chr5g0063291 RchiOBHm_Chr7g0190211
rosa_laevigata	RLG00000004553 RLG00000032520 RLG00000035614 RLG00000035619
rosa_multiflora	Rmu_sc0000033.1_g000014 Rmu_sc0004886.1_g000019 Rmu_sc0005045.1_g000016
rosa_roxburghii	Rroxscaffold_1G00017410 Rroxscaffold_1G00017420 Rroxscaffold_1G00017470 Rroxscaffold_3G00264780
rosa_rugosa	Rorug05G0058900 Rorug05G0058900 Rorug05G0059000 Rorug05G0059100 Rorug05G0355500 Rorug06G0503000
rosa_samantha	Rh5AG149600 Rh5AG415200 Rh5AG415300 Rh5AG415500 Rh5BG149000 Rh5BG430400 Rh5CG160500 Rh5CG453800 Rh5DG147800 Rh5DG444000 Rh7AG108300 Rh7BG110900 Rh7CG113300 Rh7DG111700
rosa_wichuraiana	Rw5G013250 Rw5G039050 Rw7G009390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	568
AccI	GTMKAC	1 cut(s)	144
AccII	CGCG	2 cut(s)	354, 447
AciI	CCGC	5 cut(s)	72, 337, 354, 430, 447
AcoI	YGGCCR	1 cut(s)	523
AcsI	RAATTY	1 cut(s)	788
AcuI	CTGAAG	2 cut(s)	36, 737
AfaI	GTAC	2 cut(s)	584, 627
AfiI	CCNNNNNNNGG	2 cut(s)	305, 568
AflIII	ACRYGT	2 cut(s)	323, 416
AgsI	TTSAA	2 cut(s)	41, 895
AjnI	CCWGG	4 cut(s)	561, 567, 671, 1001
AleI	CACNNNNGTG	1 cut(s)	615
AloI	GAACNNNNNNTCC	2 cut(s)	759, 791
AluBI	AGCT	2 cut(s)	734, 797
AluI	AGCT	2 cut(s)	734, 797
Alw26I	GTCTC	1 cut(s)	800
AlwNI	CAGNNNCTG	1 cut(s)	568
AoxI	GGCC	2 cut(s)	235, 523
ApeKI	GCWGC	2 cut(s)	378, 471
ApoI	RAATTY	1 cut(s)	788
AspLEI	GCGC	1 cut(s)	951
AspS9I	GGNCC	3 cut(s)	565, 767, 999
AsuHPI	GGTGA	4 cut(s)	368, 461, 569, 694
AsuNHI	GCTAGC	1 cut(s)	209
AvaII	GGWCC	3 cut(s)	565, 767, 999
BaeGI	GKGCMC	1 cut(s)	666
BalI	TGGCCA	1 cut(s)	525
BbsI	GAAGAC	1 cut(s)	54
BbvI	GCAGC	2 cut(s)	365, 458
BccI	CCATC	3 cut(s)	392, 515, 913
BciT130I	CCWGG	4 cut(s)	563, 569, 673, 1003
BcoDI	GTCTC	1 cut(s)	800
BfaI	CTAG	2 cut(s)	210, 302
BfmI	CTRYAG	1 cut(s)	79
BfoI	RGCGCY	1 cut(s)	952
BglII	AGATCT	2 cut(s)	515, 551
BisI	GCNGC	2 cut(s)	379, 472
BlsI	GCNGC	2 cut(s)	380, 473
Bme1390I	CCNGG	4 cut(s)	563, 569, 673, 1003
Bme18I	GGWCC	3 cut(s)	565, 767, 999
BmgT120I	GGNCC	3 cut(s)	565, 767, 999
BmiI	GGNNCC	1 cut(s)	990
BmrFI	CCNGG	4 cut(s)	563, 569, 673, 1003
BmsI	GCATC	2 cut(s)	481, 734
BmtI	GCTAGC	1 cut(s)	213
BpiI	GAAGAC	1 cut(s)	54
BpuEI	CTTGAG	2 cut(s)	814, 824
BsaI	GGTCTC	1 cut(s)	800
BsaJI	CCNNGG	4 cut(s)	159, 373, 466, 671
Bsc4I	CCNNNNNNNGG	2 cut(s)	305, 568
BseBI	CCWGG	4 cut(s)	563, 569, 673, 1003
BseDI	CCNNGG	4 cut(s)	159, 373, 466, 671
BseLI	CCNNNNNNNGG	2 cut(s)	305, 568
BseMII	CTCAG	1 cut(s)	138
BseRI	GAGGAG	1 cut(s)	176
BseSI	GKGCMC	1 cut(s)	666
BseXI	GCAGC	2 cut(s)	365, 458
BsgI	GTGCAG	2 cut(s)	329, 422
Bsh1236I	CGCG	2 cut(s)	354, 447
BshFI	GGCC	2 cut(s)	237, 525
BslFI	GGGAC	2 cut(s)	19, 647
BslI	CCNNNNNNNGG	2 cut(s)	305, 568
BsmAI	GTCTC	1 cut(s)	800
BsmFI	GGGAC	2 cut(s)	19, 647
BsnI	GGCC	2 cut(s)	237, 525
Bso31I	GGTCTC	1 cut(s)	800
Bsp1286I	GDGCHC	1 cut(s)	666
Bsp1407I	TGTACA	2 cut(s)	582, 625
Bsp143I	GATC	4 cut(s)	313, 406, 515, 551
Bsp19I	CCATGG	2 cut(s)	373, 466
BspACI	CCGC	5 cut(s)	72, 337, 354, 430, 447
BspANI	GGCC	2 cut(s)	237, 525
BspCNI	CTCAG	1 cut(s)	137
BspFNI	CGCG	2 cut(s)	354, 447
BspLI	GGNNCC	1 cut(s)	990
BspOI	GCTAGC	1 cut(s)	213
BspTNI	GGTCTC	1 cut(s)	800
BsrGI	TGTACA	2 cut(s)	582, 625
BssECI	CCNNGG	4 cut(s)	159, 373, 466, 671
BssMI	GATC	4 cut(s)	313, 406, 515, 551
BssT1I	CCWWGG	2 cut(s)	373, 466
Bst2UI	CCWGG	4 cut(s)	563, 569, 673, 1003
Bst4CI	ACNGT	1 cut(s)	659
Bst6I	CTCTTC	2 cut(s)	713, 971
BstAUI	TGTACA	2 cut(s)	582, 625
BstC8I	GCNNGC	2 cut(s)	211, 215
BstDEI	CTNAG	1 cut(s)	124
BstDSI	CCRYGG	2 cut(s)	373, 466
BstEII	GGTNACC	1 cut(s)	557
BstFNI	CGCG	2 cut(s)	354, 447
BstH2I	RGCGCY	1 cut(s)	952
BstHHI	GCGC	1 cut(s)	951
BstKTI	GATC	4 cut(s)	316, 409, 518, 554
BstMAI	GTCTC	1 cut(s)	800
BstMBI	GATC	4 cut(s)	313, 406, 515, 551
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 185, 343, 436
BstNI	CCWGG	4 cut(s)	563, 569, 673, 1003
BstNSI	RCATGY	2 cut(s)	327, 420
BstPI	GGTNACC	1 cut(s)	557
BstSCI	CCNGG	4 cut(s)	561, 567, 671, 1001
BstSFI	CTRYAG	1 cut(s)	79
BstSLI	GKGCMC	1 cut(s)	666
BstUI	CGCG	2 cut(s)	354, 447
BstV1I	GCAGC	2 cut(s)	365, 458
BstV2I	GAAGAC	1 cut(s)	54
BstX2I	RGATCY	2 cut(s)	515, 551
BstYI	RGATCY	2 cut(s)	515, 551
BsuRI	GGCC	2 cut(s)	237, 525
BtgI	CCRYGG	2 cut(s)	373, 466
BtsIMutI	CAGTG	1 cut(s)	664
Cac8I	GCNNGC	2 cut(s)	211, 215
CaiI	CAGNNNCTG	1 cut(s)	568
CfoI	GCGC	1 cut(s)	951
Cfr13I	GGNCC	3 cut(s)	565, 767, 999
CsiI	ACCWGGT	1 cut(s)	1001
Csp6I	GTAC	2 cut(s)	583, 626
CviAII	CATG	9 cut(s)	69, 230, 324, 374, 417, 467, 650, 784, 935
CviQI	GTAC	2 cut(s)	583, 626
DdeI	CTNAG	1 cut(s)	124
DpnI	GATC	4 cut(s)	315, 408, 517, 553
DpnII	GATC	4 cut(s)	313, 406, 515, 551
EaeI	YGGCCR	1 cut(s)	523
Eam1104I	CTCTTC	2 cut(s)	713, 971
EarI	CTCTTC	2 cut(s)	713, 971
Eco130I	CCWWGG	2 cut(s)	373, 466
Eco147I	AGGCCT	1 cut(s)	237
Eco31I	GGTCTC	1 cut(s)	800
Eco47I	GGWCC	3 cut(s)	565, 767, 999
Eco57I	CTGAAG	2 cut(s)	36, 737
Eco91I	GGTNACC	1 cut(s)	557
EcoO109I	RGGNCCY	1 cut(s)	565
EcoO65I	GGTNACC	1 cut(s)	557
EcoRI	GAATTC	1 cut(s)	788
EcoRII	CCWGG	4 cut(s)	561, 567, 671, 1001
EcoT14I	CCWWGG	2 cut(s)	373, 466
ErhI	CCWWGG	2 cut(s)	373, 466
FaeI	CATG	9 cut(s)	72, 233, 327, 377, 420, 470, 653, 787, 938
FaqI	GGGAC	2 cut(s)	19, 647
FatI	CATG	9 cut(s)	68, 229, 323, 373, 416, 466, 649, 783, 934
FauI	CCCGC	1 cut(s)	65
FauNDI	CATATG	1 cut(s)	757
FblI	GTMKAC	1 cut(s)	144
Fnu4HI	GCNGC	2 cut(s)	379, 472
Fsp4HI	GCNGC	2 cut(s)	379, 472
FspBI	CTAG	2 cut(s)	210, 302
GlaI	GCGC	1 cut(s)	950
GluI	GCNGC	2 cut(s)	379, 472
HaeII	RGCGCY	1 cut(s)	952
HaeIII	GGCC	2 cut(s)	237, 525
HhaI	GCGC	1 cut(s)	951
Hin1II	CATG	9 cut(s)	72, 233, 327, 377, 420, 470, 653, 787, 938
Hin6I	GCGC	1 cut(s)	949
HinP1I	GCGC	1 cut(s)	949
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HphI	GGTGA	4 cut(s)	368, 461, 569, 694
Hpy166II	GTNNAC	2 cut(s)	145, 583
Hpy188III	TCNNGA	3 cut(s)	302, 852, 895
Hpy8I	GTNNAC	2 cut(s)	145, 583
HpyAV	CCTTC	4 cut(s)	14, 35, 275, 868
HpyCH4III	ACNGT	1 cut(s)	659
HpyCH4V	TGCA	8 cut(s)	346, 381, 439, 474, 494, 755, 943, 996
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 185, 343, 436
HpyF3I	CTNAG	1 cut(s)	124
Hsp92II	CATG	9 cut(s)	72, 233, 327, 377, 420, 470, 653, 787, 938
HspAI	GCGC	1 cut(s)	949
Kzo9I	GATC	4 cut(s)	313, 406, 515, 551
LmnI	GCTCC	1 cut(s)	802
Lsp1109I	GCAGC	2 cut(s)	365, 458
LweI	GCATC	2 cut(s)	481, 734
MabI	ACCWGGT	1 cut(s)	1001
MaeI	CTAG	2 cut(s)	210, 302
MaeIII	GTNAC	3 cut(s)	99, 539, 557
MalI	GATC	4 cut(s)	315, 408, 517, 553
MboI	GATC	4 cut(s)	313, 406, 515, 551
MboII	GAAGA	7 cut(s)	29, 59, 730, 833, 910, 928, 988
MflI	RGATCY	2 cut(s)	515, 551
MhlI	GDGCHC	1 cut(s)	666
MlsI	TGGCCA	1 cut(s)	525
MluCI	AATT	3 cut(s)	788, 811, 938
MluNI	TGGCCA	1 cut(s)	525
MlyI	GAGTC	3 cut(s)	59, 116, 140
MmeI	TCCRAC	2 cut(s)	285, 966
Mox20I	TGGCCA	1 cut(s)	525
MscI	TGGCCA	1 cut(s)	525
MseI	TTAA	2 cut(s)	183, 606
MslI	CAYNNNNRTG	2 cut(s)	106, 615
Msp20I	TGGCCA	1 cut(s)	525
MspR9I	CCNGG	4 cut(s)	563, 569, 673, 1003
MvaI	CCWGG	4 cut(s)	563, 569, 673, 1003
MvnI	CGCG	2 cut(s)	354, 447
MwoI	GCNNNNNNNGC	4 cut(s)	11, 185, 343, 436
NcoI	CCATGG	2 cut(s)	373, 466
NdeI	CATATG	1 cut(s)	757
NdeII	GATC	4 cut(s)	313, 406, 515, 551
NheI	GCTAGC	1 cut(s)	209
NlaIII	CATG	9 cut(s)	72, 233, 327, 377, 420, 470, 653, 787, 938
NlaIV	GGNNCC	1 cut(s)	990
NmuCI	GTSAC	2 cut(s)	99, 557
NspI	RCATGY	2 cut(s)	327, 420
OliI	CACNNNNGTG	1 cut(s)	615
PceI	AGGCCT	1 cut(s)	237
PciI	ACATGT	2 cut(s)	323, 416
PfeI	GAWTC	7 cut(s)	155, 642, 712, 738, 842, 855, 923
PflMI	CCANNNNNTGG	1 cut(s)	568
PkrI	GCNGC	2 cut(s)	380, 473
PleI	GAGTC	3 cut(s)	59, 116, 140
PpsI	GAGTC	3 cut(s)	59, 116, 140
PpuMI	RGGWCCY	1 cut(s)	565
PscI	ACATGT	2 cut(s)	323, 416
Psp5II	RGGWCCY	1 cut(s)	565
Psp6I	CCWGG	4 cut(s)	561, 567, 671, 1001
PspEI	GGTNACC	1 cut(s)	557
PspGI	CCWGG	4 cut(s)	561, 567, 671, 1001
PspN4I	GGNNCC	1 cut(s)	990
PspPI	GGNCC	3 cut(s)	565, 767, 999
PspPPI	RGGWCCY	1 cut(s)	565
PstNI	CAGNNNCTG	1 cut(s)	568
PsuI	RGATCY	2 cut(s)	515, 551
RsaI	GTAC	2 cut(s)	584, 627
RsaNI	GTAC	2 cut(s)	583, 626
RseI	CAYNNNNRTG	2 cut(s)	106, 615
SalI	GTCGAC	1 cut(s)	143
SaqAI	TTAA	2 cut(s)	183, 606
SatI	GCNGC	2 cut(s)	379, 472
Sau3AI	GATC	4 cut(s)	313, 406, 515, 551
Sau96I	GGNCC	3 cut(s)	565, 767, 999
SchI	GAGTC	3 cut(s)	59, 116, 140
ScrFI	CCNGG	4 cut(s)	563, 569, 673, 1003
SduI	GDGCHC	1 cut(s)	666
SexAI	ACCWGGT	1 cut(s)	1001
SfaNI	GCATC	2 cut(s)	481, 734
SfcI	CTRYAG	1 cut(s)	79
SinI	GGWCC	3 cut(s)	565, 767, 999
SmiMI	CAYNNNNRTG	2 cut(s)	106, 615
SmlI	CTYRAG	2 cut(s)	803, 829
SmoI	CTYRAG	2 cut(s)	803, 829
Sse9I	AATT	3 cut(s)	788, 811, 938
SseBI	AGGCCT	1 cut(s)	237
SsiI	CCGC	5 cut(s)	72, 337, 354, 430, 447
SspI	AATATT	1 cut(s)	890
SspMI	CTAG	2 cut(s)	210, 302
StuI	AGGCCT	1 cut(s)	237
StyD4I	CCNGG	4 cut(s)	561, 567, 671, 1001
StyI	CCWWGG	2 cut(s)	373, 466
TaaI	ACNGT	1 cut(s)	659
TaqI	TCGA	1 cut(s)	144
TasI	AATT	3 cut(s)	788, 811, 938
TatI	WGTACW	2 cut(s)	582, 625
TfiI	GAWTC	7 cut(s)	155, 642, 712, 738, 842, 855, 923
Tru1I	TTAA	2 cut(s)	183, 606
Tru9I	TTAA	2 cut(s)	183, 606
TscAI	CASTG	1 cut(s)	664
TseFI	GTSAC	2 cut(s)	99, 557
TseI	GCWGC	2 cut(s)	378, 471
Tsp45I	GTSAC	2 cut(s)	99, 557
TspDTI	ATGAA	5 cut(s)	189, 666, 781, 834, 951
TspRI	CASTG	1 cut(s)	664
Van91I	CCANNNNNTGG	1 cut(s)	568
VpaK11BI	GGWCC	3 cut(s)	565, 767, 999
XapI	RAATTY	1 cut(s)	788
XbaI	TCTAGA	1 cut(s)	301
XceI	RCATGY	2 cut(s)	327, 420
XmiI	GTMKAC	1 cut(s)	144
XspI	CTAG	2 cut(s)	210, 302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.