Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002105.1

Orthogroup ID

OG0006641

Physical Location & Seq

Genomic Coordinates Reverse (-)

25235 .. 28496

Gene Structure 3262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002105.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

atgccctcgccgccgcaatctaacttttcggcgggtgacccttccagcctgccatcagatgcaaaccagtcaacccgaagaacacgacccctgcaacgctgctcgatcaaggccggagtaccaatctggtgcgaaacaacctaccaagttggcctccttctgcctccctggaccgccgccgattcaacacgctctgcccagaaaacccaccacctacaaatctgccgaaaccagccacccacctgctggacctacgaagatcagagaaaaacgcagccgacgccacgaaaaccagaacaaacacggtcagagaggcctccaattcagaaacctcttgccgcaaaaccacgatcgacactgaggatccgctccgccccgccgccataccgctccacggacgcctccttgcctgaagaacgccgccgccagtcgaaacctagctggccactttggggttatgcgatagtgtgcattttcgtaaatgttcatggtctgaatatttatttttggctttccttcatccctgccattcttgtcatgctggtcggaacaaagctccagcatgttgtctcttccttagcacttgaaattgtagaacaaacagggccggctgttgggactgaagtaaagccacgtgacgatttgttttggtttgggaaaccagtaatactactgcggttgatacaattcatcatatttcagaatgcctttgagatggcaacatttctctggtccttgtggggacttaaggagagatcatgcttcatgaaaaaccacgtattgatagttattcggttggcttctggtgttcttgttcagttctggtgtagtcacagcacagtgcctctaaatgtcattgttacgcagatgggatcccggtgtcagaaagctctggttgctgagagtgtcagagaatcactccatagttggtgcaagagagtaaaggagaggtctaaacactcgcatgctgcaagatcagtttgttcacttgacacaacaattgatgagagggatgagataacagttgcatctggcactctatctcggagctcttccttggactcccaacatcaagtaactgcgaaagatatagagagattacaagagacagcaaattcatacaagggtacaataatttatcatactagaaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0016020 GO:0044464 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mlo

Protein Analysis

384

Amino Acids

43.5

Weight (kDa)

9.75

Isoelectric Point (pI)

56.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11000 AT1G11000 AT1G11000
fragaria_vesca	FvH4_5g28810 FvH4_5g28810 FvH4_5g28810
malus_domestica	MD08G1236900.v1.1
prunus_persica	Prupe.1G574000_v2.0.a1 Prupe.1G574000_v2.0.a1 Prupe.1G574000_v2.0.a1 Prupe.1G574000_v2.0.a1 Prupe.1G574000_v2.0.a1
pyrus_communis	pycom08g20510
rosa_chinensis	RchiOBHm_Chr7g0221021
rosa_laevigata	RLG00000002183
rosa_multiflora	Rmu_co8452501.1_g000001 Rmu_sc0002105.1_g000005 Rmu_sc0012763.1_g000010
rosa_roxburghii	Rroxscaffold_3G00238800
rosa_rugosa	Rorug07G0199900 Rorug07G0200000
rosa_samantha	Rh7AG339300 Rh7BG330300 Rh7CG357300 Rh7DG338000
rosa_wichuraiana	Rw7G028860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	251
Acc36I	ACCTGC	1 cut(s)	251
AccB7I	CCANNNNNTGG	1 cut(s)	246
AccBSI	CCGCTC	2 cut(s)	369, 390
AclWI	GGATC	4 cut(s)	358, 371, 867, 880
AcoI	YGGCCR	1 cut(s)	443
AcsI	RAATTY	1 cut(s)	1114
AcuI	CTGAAG	2 cut(s)	432, 642
AcvI	CACGTG	1 cut(s)	635
AcyI	GRCGYC	2 cut(s)	281, 399
AfaI	GTAC	2 cut(s)	120, 1129
AfiI	CCNNNNNNNGG	4 cut(s)	246, 394, 452, 614
AflII	CTTAAG	1 cut(s)	746
AgsI	TTSAA	2 cut(s)	186, 587
AjnI	CCWGG	1 cut(s)	167
AluBI	AGCT	4 cut(s)	441, 556, 890, 1050
AluI	AGCT	4 cut(s)	441, 556, 890, 1050
Alw21I	GWGCWC	1 cut(s)	1052
Alw26I	GTCTC	2 cut(s)	574, 1100
AlwI	GGATC	4 cut(s)	358, 371, 867, 880
AoxI	GGCC	5 cut(s)	111, 151, 314, 443, 605
ApeKI	GCWGC	3 cut(s)	99, 274, 968
ApoI	RAATTY	1 cut(s)	1114
AspS9I	GGNCC	4 cut(s)	171, 249, 605, 732
AsuC2I	CCSGG	1 cut(s)	877
AsuHPI	GGTGA	1 cut(s)	47
AvaII	GGWCC	3 cut(s)	171, 249, 732
BalI	TGGCCA	1 cut(s)	445
BamHI	GGATCC	2 cut(s)	363, 872
BanII	GRGCYC	1 cut(s)	1052
BbrPI	CACGTG	1 cut(s)	635
Bbv12I	GWGCWC	1 cut(s)	1052
BbvI	GCAGC	3 cut(s)	86, 286, 955
BccI	CCATC	3 cut(s)	61, 709, 862
BciT130I	CCWGG	1 cut(s)	169
BcnI	CCSGG	1 cut(s)	877
BcoDI	GTCTC	2 cut(s)	574, 1100
BfaI	CTAG	2 cut(s)	438, 1146
BfrI	CTTAAG	1 cut(s)	746
BfuAI	ACCTGC	1 cut(s)	251
Bme1390I	CCNGG	2 cut(s)	169, 877
Bme18I	GGWCC	3 cut(s)	171, 249, 732
BmgT120I	GGNCC	4 cut(s)	171, 249, 605, 732
BmiI	GGNNCC	2 cut(s)	365, 874
BmrFI	CCNGG	2 cut(s)	169, 877
BmsI	GCATC	2 cut(s)	49, 1037
BplI	GAGNNNNNCTC	2 cut(s)	903, 935
BpmI	CTGGAG	1 cut(s)	542
Bpu10I	CCTNAGC	1 cut(s)	577
BpuMI	CCSGG	1 cut(s)	877
BsaAI	YACGTR	2 cut(s)	635, 778
BsaHI	GRCGYC	2 cut(s)	281, 399
BsaJI	CCNNGG	3 cut(s)	167, 393, 1056
Bsc4I	CCNNNNNNNGG	4 cut(s)	246, 394, 452, 614
Bse118I	RCCGGY	1 cut(s)	607
Bse1I	ACTGG	3 cut(s)	67, 427, 662
BseBI	CCWGG	1 cut(s)	169
BseDI	CCNNGG	3 cut(s)	167, 393, 1056
BseGI	GGATG	2 cut(s)	519, 1018
BseLI	CCNNNNNNNGG	4 cut(s)	246, 394, 452, 614
BseMII	CTCAG	2 cut(s)	350, 891
BseNI	ACTGG	3 cut(s)	67, 427, 662
BseXI	GCAGC	3 cut(s)	86, 286, 955
Bsh1285I	CGRYCG	1 cut(s)	353
BshFI	GGCC	5 cut(s)	113, 153, 316, 445, 607
BsiEI	CGRYCG	1 cut(s)	353
BsiHKAI	GWGCWC	1 cut(s)	1052
BsiSI	CCGG	3 cut(s)	114, 608, 877
BslFI	GGGAC	2 cut(s)	631, 756
BslI	CCNNNNNNNGG	4 cut(s)	246, 394, 452, 614
BsmAI	GTCTC	2 cut(s)	574, 1100
BsmFI	GGGAC	2 cut(s)	631, 756
BsmI	GAATGC	1 cut(s)	709
BsnI	GGCC	5 cut(s)	113, 153, 316, 445, 607
Bsp1286I	GDGCHC	1 cut(s)	1052
Bsp143I	GATC	7 cut(s)	105, 259, 350, 363, 755, 872, 974
BspANI	GGCC	5 cut(s)	113, 153, 316, 445, 607
BspCNI	CTCAG	2 cut(s)	351, 892
BspHI	TCATGA	1 cut(s)	765
BspLI	GGNNCC	2 cut(s)	365, 874
BspMI	ACCTGC	1 cut(s)	251
BspPI	GGATC	4 cut(s)	358, 371, 867, 880
BspQI	GCTCTTC	1 cut(s)	1057
BspTI	CTTAAG	1 cut(s)	746
BsrBI	CCGCTC	2 cut(s)	369, 390
BsrFI	RCCGGY	1 cut(s)	607
BsrI	ACTGG	3 cut(s)	67, 427, 662
BssAI	RCCGGY	1 cut(s)	607
BssECI	CCNNGG	3 cut(s)	167, 393, 1056
BssMI	GATC	7 cut(s)	105, 259, 350, 363, 755, 872, 974
BssNI	GRCGYC	2 cut(s)	281, 399
BssT1I	CCWWGG	1 cut(s)	1056
Bst2UI	CCWGG	1 cut(s)	169
Bst4CI	ACNGT	3 cut(s)	306, 841, 1024
Bst6I	CTCTTC	2 cut(s)	577, 1057
BstACI	GRCGYC	2 cut(s)	281, 399
BstAFI	CTTAAG	1 cut(s)	746
BstBAI	YACGTR	2 cut(s)	635, 778
BstC8I	GCNNGC	4 cut(s)	50, 443, 609, 966
BstDEI	CTNAG	3 cut(s)	359, 577, 900
BstDSI	CCRYGG	1 cut(s)	393
BstEII	GGTNACC	1 cut(s)	35
BstF5I	GGATG	2 cut(s)	519, 1018
BstKTI	GATC	7 cut(s)	108, 262, 353, 366, 758, 875, 977
BstMAI	GTCTC	2 cut(s)	574, 1100
BstMBI	GATC	7 cut(s)	105, 259, 350, 363, 755, 872, 974
BstMCI	CGRYCG	1 cut(s)	353
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 280, 896
BstNI	CCWGG	1 cut(s)	169
BstNSI	RCATGY	2 cut(s)	566, 968
BstPI	GGTNACC	1 cut(s)	35
BstSCI	CCNGG	2 cut(s)	167, 875
BstV1I	GCAGC	3 cut(s)	86, 286, 955
BstX2I	RGATCY	2 cut(s)	363, 872
BstYI	RGATCY	2 cut(s)	363, 872
BsuRI	GGCC	5 cut(s)	113, 153, 316, 445, 607
BtgI	CCRYGG	1 cut(s)	393
BtsCI	GGATG	2 cut(s)	519, 1018
BtsIMutI	CAGTG	2 cut(s)	356, 846
BveI	ACCTGC	1 cut(s)	251
Cac8I	GCNNGC	4 cut(s)	50, 443, 609, 966
CciI	TCATGA	1 cut(s)	765
Cfr10I	RCCGGY	1 cut(s)	607
Cfr13I	GGNCC	4 cut(s)	171, 249, 605, 732
CseI	GACGC	2 cut(s)	289, 407
Csp6I	GTAC	2 cut(s)	119, 1128
CviAII	CATG	6 cut(s)	488, 538, 563, 759, 766, 965
CviQI	GTAC	2 cut(s)	119, 1128
DdeI	CTNAG	3 cut(s)	359, 577, 900
DpnI	GATC	7 cut(s)	107, 261, 352, 365, 757, 874, 976
DpnII	GATC	7 cut(s)	105, 259, 350, 363, 755, 872, 974
EaeI	YGGCCR	1 cut(s)	443
Eam1104I	CTCTTC	2 cut(s)	577, 1057
EarI	CTCTTC	2 cut(s)	577, 1057
EciI	GGCGGA	1 cut(s)	361
Ecl136II	GAGCTC	1 cut(s)	1050
Eco130I	CCWWGG	1 cut(s)	1056
Eco147I	AGGCCT	1 cut(s)	316
Eco24I	GRGCYC	1 cut(s)	1052
Eco47I	GGWCC	3 cut(s)	171, 249, 732
Eco53kI	GAGCTC	1 cut(s)	1050
Eco57I	CTGAAG	2 cut(s)	432, 642
Eco72I	CACGTG	1 cut(s)	635
Eco91I	GGTNACC	1 cut(s)	35
EcoICRI	GAGCTC	1 cut(s)	1050
EcoO65I	GGTNACC	1 cut(s)	35
EcoRII	CCWGG	1 cut(s)	167
EcoT14I	CCWWGG	1 cut(s)	1056
EcoT38I	GRGCYC	1 cut(s)	1052
ErhI	CCWWGG	1 cut(s)	1056
FaeI	CATG	6 cut(s)	491, 541, 566, 762, 769, 968
FaqI	GGGAC	2 cut(s)	631, 756
FatI	CATG	6 cut(s)	487, 537, 562, 758, 765, 964
FauI	CCCGC	2 cut(s)	25, 384
FokI	GGATG	2 cut(s)	506, 1025
FriOI	GRGCYC	1 cut(s)	1052
FspBI	CTAG	2 cut(s)	438, 1146
GsuI	CTGGAG	1 cut(s)	542
HaeIII	GGCC	5 cut(s)	113, 153, 316, 445, 607
HapII	CCGG	3 cut(s)	114, 608, 877
HgaI	GACGC	2 cut(s)	289, 407
Hin1I	GRCGYC	2 cut(s)	281, 399
Hin1II	CATG	6 cut(s)	491, 541, 566, 762, 769, 968
HincII	GTYRAC	1 cut(s)	72
HindII	GTYRAC	1 cut(s)	72
HinfI	GANTC	3 cut(s)	182, 914, 1061
HpaII	CCGG	3 cut(s)	114, 608, 877
HphI	GGTGA	1 cut(s)	47
Hpy166II	GTNNAC	2 cut(s)	72, 986
Hpy188III	TCNNGA	1 cut(s)	766
Hpy8I	GTNNAC	2 cut(s)	72, 986
Hpy99I	CGWCG	1 cut(s)	283
HpyAV	CCTTC	3 cut(s)	51, 167, 526
HpyCH4III	ACNGT	3 cut(s)	306, 841, 1024
HpyCH4IV	ACGT	2 cut(s)	634, 777
HpyCH4V	TGCA	6 cut(s)	62, 94, 471, 933, 971, 1028
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 280, 896
HpyF3I	CTNAG	3 cut(s)	359, 577, 900
HpySE526I	ACGT	2 cut(s)	634, 777
Hsp92I	GRCGYC	2 cut(s)	281, 399
Hsp92II	CATG	6 cut(s)	491, 541, 566, 762, 769, 968
KroI	GCCGGC	1 cut(s)	607
KroNI	GCCGGC	1 cut(s)	609
Kzo9I	GATC	7 cut(s)	105, 259, 350, 363, 755, 872, 974
LguI	GCTCTTC	1 cut(s)	1057
LmnI	GCTCC	4 cut(s)	374, 395, 561, 1047
Lsp1109I	GCAGC	3 cut(s)	86, 286, 955
LweI	GCATC	2 cut(s)	49, 1037
MaeI	CTAG	2 cut(s)	438, 1146
MaeII	ACGT	2 cut(s)	634, 777
MaeIII	GTNAC	5 cut(s)	35, 635, 830, 859, 1075
MalI	GATC	7 cut(s)	107, 261, 352, 365, 757, 874, 976
MbiI	CCGCTC	2 cut(s)	369, 390
MboI	GATC	7 cut(s)	105, 259, 350, 363, 755, 872, 974
MboII	GAAGA	5 cut(s)	90, 269, 425, 564, 1044
MfeI	CAATTG	1 cut(s)	999
MflI	RGATCY	2 cut(s)	363, 872
MhlI	GDGCHC	1 cut(s)	1052
MlsI	TGGCCA	1 cut(s)	445
MluCI	AATT	6 cut(s)	321, 588, 686, 999, 1114, 1134
MluNI	TGGCCA	1 cut(s)	445
MlyI	GAGTC	1 cut(s)	1055
MmeI	TCCRAC	1 cut(s)	526
Mox20I	TGGCCA	1 cut(s)	445
MroNI	GCCGGC	1 cut(s)	607
MscI	TGGCCA	1 cut(s)	445
MseI	TTAA	1 cut(s)	747
MslI	CAYNNNNRTG	1 cut(s)	963
Msp20I	TGGCCA	1 cut(s)	445
MspCI	CTTAAG	1 cut(s)	746
MspI	CCGG	3 cut(s)	114, 608, 877
MspR9I	CCNGG	2 cut(s)	169, 877
MunI	CAATTG	1 cut(s)	999
Mva1269I	GAATGC	1 cut(s)	709
MvaI	CCWGG	1 cut(s)	169
MwoI	GCNNNNNNNGC	3 cut(s)	10, 280, 896
NaeI	GCCGGC	1 cut(s)	609
NciI	CCSGG	1 cut(s)	877
NdeII	GATC	7 cut(s)	105, 259, 350, 363, 755, 872, 974
NgoMIV	GCCGGC	1 cut(s)	607
NlaIII	CATG	6 cut(s)	491, 541, 566, 762, 769, 968
NlaIV	GGNNCC	2 cut(s)	365, 874
NmuCI	GTSAC	3 cut(s)	35, 635, 830
NspI	RCATGY	2 cut(s)	566, 968
PaeI	GCATGC	1 cut(s)	968
PagI	TCATGA	1 cut(s)	765
PaqCI	CACCTGC	1 cut(s)	251
PceI	AGGCCT	1 cut(s)	316
PciSI	GCTCTTC	1 cut(s)	1057
PctI	GAATGC	1 cut(s)	709
PdiI	GCCGGC	1 cut(s)	609
PfeI	GAWTC	2 cut(s)	182, 914
PflMI	CCANNNNNTGG	1 cut(s)	246
Ple19I	CGATCG	1 cut(s)	353
PleI	GAGTC	1 cut(s)	1055
PmaCI	CACGTG	1 cut(s)	635
PmlI	CACGTG	1 cut(s)	635
PpsI	GAGTC	1 cut(s)	1055
Ppu21I	YACGTR	2 cut(s)	635, 778
Psp124BI	GAGCTC	1 cut(s)	1052
Psp6I	CCWGG	1 cut(s)	167
PspCI	CACGTG	1 cut(s)	635
PspEI	GGTNACC	1 cut(s)	35
PspGI	CCWGG	1 cut(s)	167
PspN4I	GGNNCC	2 cut(s)	365, 874
PspPI	GGNCC	4 cut(s)	171, 249, 605, 732
PsuI	RGATCY	2 cut(s)	363, 872
PvuI	CGATCG	1 cut(s)	353
RsaI	GTAC	2 cut(s)	120, 1129
RsaNI	GTAC	2 cut(s)	119, 1128
RseI	CAYNNNNRTG	1 cut(s)	963
SacI	GAGCTC	1 cut(s)	1052
SapI	GCTCTTC	1 cut(s)	1057
SaqAI	TTAA	1 cut(s)	747
Sau3AI	GATC	7 cut(s)	105, 259, 350, 363, 755, 872, 974
Sau96I	GGNCC	4 cut(s)	171, 249, 605, 732
SchI	GAGTC	1 cut(s)	1055
ScrFI	CCNGG	2 cut(s)	169, 877
SduI	GDGCHC	1 cut(s)	1052
SfaNI	GCATC	2 cut(s)	49, 1037
SinI	GGWCC	3 cut(s)	171, 249, 732
SmiMI	CAYNNNNRTG	1 cut(s)	963
SmlI	CTYRAG	1 cut(s)	746
SmoI	CTYRAG	1 cut(s)	746
SphI	GCATGC	1 cut(s)	968
Sse9I	AATT	6 cut(s)	321, 588, 686, 999, 1114, 1134
SseBI	AGGCCT	1 cut(s)	316
SspI	AATATT	1 cut(s)	499
SspMI	CTAG	2 cut(s)	438, 1146
SstI	GAGCTC	1 cut(s)	1052
StuI	AGGCCT	1 cut(s)	316
StyD4I	CCNGG	2 cut(s)	167, 875
StyI	CCWWGG	1 cut(s)	1056
TaaI	ACNGT	3 cut(s)	306, 841, 1024
TaiI	ACGT	2 cut(s)	637, 780
TaqI	TCGA	3 cut(s)	104, 353, 431
TasI	AATT	6 cut(s)	321, 588, 686, 999, 1114, 1134
TauI	GCSGC	7 cut(s)	13, 16, 179, 341, 382, 423, 426
TfiI	GAWTC	2 cut(s)	182, 914
Tru1I	TTAA	1 cut(s)	747
Tru9I	TTAA	1 cut(s)	747
TscAI	CASTG	2 cut(s)	363, 846
TseFI	GTSAC	3 cut(s)	35, 635, 830
TseI	GCWGC	3 cut(s)	99, 274, 968
Tsp45I	GTSAC	3 cut(s)	35, 635, 830
TspDTI	ATGAA	6 cut(s)	476, 508, 679, 754, 782, 1107
TspGWI	ACGGA	1 cut(s)	410
TspRI	CASTG	2 cut(s)	363, 846
Van91I	CCANNNNNTGG	1 cut(s)	246
Vha464I	CTTAAG	1 cut(s)	746
VpaK11BI	GGWCC	3 cut(s)	171, 249, 732
XapI	RAATTY	1 cut(s)	1114
XceI	RCATGY	2 cut(s)	566, 968
XcmI	CCANNNNNNNNNTGG	1 cut(s)	243
XspI	CTAG	2 cut(s)	438, 1146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.