Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012763.1

Orthogroup ID

OG0006641

Physical Location & Seq

Genomic Coordinates Reverse (-)

51024 .. 52213

Gene Structure 1190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012763.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

atggaggaggtgatacagcaacaaaggtcattggccgagacaccaacttattcagttgcttcagttgttactgttatggtctttgtctgccttctggtgcaaaggtcaatctacagatttggaaagtggttaaagaagactaggaggaaagcgctgtttgtttcgttggagaagatcaaggaagagctcatgctacttggccttatatctttgttgctggcgcaatccgcaaggtggatttctgagatatgtgtaaactcttctcttttcaccagcaaattttatatctgttctgagaaagattacagcaacaccaatgagaaggtcaagcttgagagttctttttcttctcccaatgcgactgatattccagcaggattaatcaatctttcttctcatcaatgtggtgagggccatgaaccatttgtttcatatgagggactggagcagctgcaccggttcttgtttgttcttgggatcacccatgtcttgtatagttgtgtggcggttggtttggctatgagcaagatatacagttggaggaaatgggaaaatcaagctggcttactggctgatgcgaatttgcaagcctccaggctatgttcagcacttagtgacttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0016020 GO:0044464 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mlo

Protein Analysis

207

Amino Acids

23.33

Weight (kDa)

8.19

Isoelectric Point (pI)

40.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006641)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11000 AT1G11000 AT1G11000
fragaria_vesca	FvH4_5g28810 FvH4_5g28810 FvH4_5g28810
malus_domestica	MD08G1236900.v1.1
prunus_persica	Prupe.1G574000_v2.0.a1 Prupe.1G574000_v2.0.a1 Prupe.1G574000_v2.0.a1 Prupe.1G574000_v2.0.a1 Prupe.1G574000_v2.0.a1
pyrus_communis	pycom08g20510
rosa_chinensis	RchiOBHm_Chr7g0221021
rosa_laevigata	RLG00000002183
rosa_multiflora	Rmu_co8452501.1_g000001 Rmu_sc0002105.1_g000005 Rmu_sc0012763.1_g000010
rosa_roxburghii	Rroxscaffold_3G00238800
rosa_rugosa	Rorug07G0199900 Rorug07G0200000
rosa_samantha	Rh7AG339300 Rh7BG330300 Rh7CG357300 Rh7DG338000
rosa_wichuraiana	Rw7G028860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	228, 506
AclWI	GGATC	1 cut(s)	485
AcoI	YGGCCR	1 cut(s)	33
AcsI	RAATTY	2 cut(s)	278, 580
AcuI	CTGAAG	1 cut(s)	45
AdeI	CACNNNGTG	1 cut(s)	614
AfeI	AGCGCT	1 cut(s)	153
AfiI	CCNNNNNNNGG	1 cut(s)	234
AgeI	ACCGGT	1 cut(s)	456
AjnI	CCWGG	1 cut(s)	593
AluBI	AGCT	4 cut(s)	187, 331, 451, 560
AluI	AGCT	4 cut(s)	187, 331, 451, 560
Alw21I	GWGCWC	1 cut(s)	189
Alw26I	GTCTC	1 cut(s)	32
AlwI	GGATC	1 cut(s)	485
Aor51HI	AGCGCT	1 cut(s)	153
AoxI	GGCC	3 cut(s)	33, 199, 412
ApeKI	GCWGC	2 cut(s)	448, 451
ApoI	RAATTY	2 cut(s)	278, 580
AseI	ATTAAT	1 cut(s)	380
AsiGI	ACCGGT	1 cut(s)	456
AspLEI	GCGC	2 cut(s)	154, 223
AspS9I	GGNCC	1 cut(s)	412
AsuHPI	GGTGA	4 cut(s)	22, 262, 419, 472
BanII	GRGCYC	1 cut(s)	189
BbsI	GAAGAC	1 cut(s)	143
Bbv12I	GWGCWC	1 cut(s)	189
BbvI	GCAGC	2 cut(s)	438, 460
BciT130I	CCWGG	1 cut(s)	595
BcoDI	GTCTC	1 cut(s)	32
BfaI	CTAG	1 cut(s)	141
BfmI	CTRYAG	1 cut(s)	112
BfoI	RGCGCY	1 cut(s)	155
BisI	GCNGC	2 cut(s)	449, 452
BlsI	GCNGC	2 cut(s)	450, 453
Bme1390I	CCNGG	1 cut(s)	595
BmgT120I	GGNCC	1 cut(s)	412
BmrFI	CCNGG	1 cut(s)	595
BmsI	GCATC	1 cut(s)	565
BpiI	GAAGAC	1 cut(s)	143
BpmI	CTGGAG	2 cut(s)	464, 577
BpuEI	CTTGAG	1 cut(s)	353
BsaWI	WCCGGW	1 cut(s)	456
Bsc4I	CCNNNNNNNGG	1 cut(s)	234
Bse118I	RCCGGY	1 cut(s)	456
Bse1I	ACTGG	2 cut(s)	447, 573
BseBI	CCWGG	1 cut(s)	595
BseLI	CCNNNNNNNGG	1 cut(s)	234
BseMII	CTCAG	2 cut(s)	234, 285
BseNI	ACTGG	2 cut(s)	447, 573
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	2 cut(s)	438, 460
BsgI	GTGCAG	1 cut(s)	437
BshFI	GGCC	3 cut(s)	35, 201, 414
BshTI	ACCGGT	1 cut(s)	456
BsiHKAI	GWGCWC	1 cut(s)	189
BsiSI	CCGG	1 cut(s)	457
BslFI	GGGAC	1 cut(s)	453
BslI	CCNNNNNNNGG	1 cut(s)	234
BsmAI	GTCTC	1 cut(s)	32
BsmFI	GGGAC	1 cut(s)	453
BsnI	GGCC	3 cut(s)	35, 201, 414
Bsp1286I	GDGCHC	1 cut(s)	189
Bsp143I	GATC	2 cut(s)	174, 477
BspACI	CCGC	2 cut(s)	228, 506
BspANI	GGCC	3 cut(s)	35, 201, 414
BspCNI	CTCAG	2 cut(s)	235, 286
BspPI	GGATC	1 cut(s)	485
BspQI	GCTCTTC	1 cut(s)	177
BsrFI	RCCGGY	1 cut(s)	456
BsrI	ACTGG	2 cut(s)	447, 573
BssAI	RCCGGY	1 cut(s)	456
BssMI	GATC	2 cut(s)	174, 477
Bst2UI	CCWGG	1 cut(s)	595
Bst4CI	ACNGT	2 cut(s)	73, 536
Bst6I	CTCTTC	2 cut(s)	177, 265
BstC8I	GCNNGC	3 cut(s)	219, 562, 588
BstDEI	CTNAG	3 cut(s)	243, 294, 611
BstH2I	RGCGCY	1 cut(s)	155
BstHHI	GCGC	2 cut(s)	154, 223
BstKTI	GATC	2 cut(s)	177, 480
BstMAI	GTCTC	1 cut(s)	32
BstMBI	GATC	2 cut(s)	174, 477
BstMWI	GCNNNNNNNGC	1 cut(s)	227
BstNI	CCWGG	1 cut(s)	595
BstSCI	CCNGG	1 cut(s)	593
BstSFI	CTRYAG	1 cut(s)	112
BstV1I	GCAGC	2 cut(s)	438, 460
BstV2I	GAAGAC	1 cut(s)	143
BsuRI	GGCC	3 cut(s)	35, 201, 414
Cac8I	GCNNGC	3 cut(s)	219, 562, 588
CfoI	GCGC	2 cut(s)	154, 223
Cfr10I	RCCGGY	1 cut(s)	456
Cfr13I	GGNCC	1 cut(s)	412
CspAI	ACCGGT	1 cut(s)	456
CviAII	CATG	3 cut(s)	190, 416, 485
DdeI	CTNAG	3 cut(s)	243, 294, 611
DpnI	GATC	2 cut(s)	176, 479
DpnII	GATC	2 cut(s)	174, 477
DraIII	CACNNNGTG	1 cut(s)	614
EaeI	YGGCCR	1 cut(s)	33
Eam1104I	CTCTTC	2 cut(s)	177, 265
EarI	CTCTTC	2 cut(s)	177, 265
Ecl136II	GAGCTC	1 cut(s)	187
Eco24I	GRGCYC	1 cut(s)	189
Eco47III	AGCGCT	1 cut(s)	153
Eco53kI	GAGCTC	1 cut(s)	187
Eco57I	CTGAAG	1 cut(s)	45
EcoICRI	GAGCTC	1 cut(s)	187
EcoRII	CCWGG	1 cut(s)	593
EcoT38I	GRGCYC	1 cut(s)	189
FaeI	CATG	3 cut(s)	193, 419, 488
FaqI	GGGAC	1 cut(s)	453
FatI	CATG	3 cut(s)	189, 415, 484
FauNDI	CATATG	1 cut(s)	433
Fnu4HI	GCNGC	2 cut(s)	449, 452
FriOI	GRGCYC	1 cut(s)	189
Fsp4HI	GCNGC	2 cut(s)	449, 452
FspBI	CTAG	1 cut(s)	141
GlaI	GCGC	2 cut(s)	153, 222
GluI	GCNGC	2 cut(s)	449, 452
GsuI	CTGGAG	2 cut(s)	464, 577
HaeII	RGCGCY	1 cut(s)	155
HaeIII	GGCC	3 cut(s)	35, 201, 414
HapII	CCGG	1 cut(s)	457
HhaI	GCGC	2 cut(s)	154, 223
Hin1II	CATG	3 cut(s)	193, 419, 488
Hin6I	GCGC	2 cut(s)	152, 221
HinP1I	GCGC	2 cut(s)	152, 221
HindIII	AAGCTT	1 cut(s)	329
HpaII	CCGG	1 cut(s)	457
HphI	GGTGA	4 cut(s)	22, 262, 419, 472
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	3 cut(s)	244, 295, 623
Hpy8I	GTNNAC	1 cut(s)	256
HpyAV	CCTTC	2 cut(s)	101, 316
HpyCH4III	ACNGT	2 cut(s)	73, 536
HpyCH4V	TGCA	3 cut(s)	100, 454, 586
HpyF10VI	GCNNNNNNNGC	1 cut(s)	227
HpyF3I	CTNAG	3 cut(s)	243, 294, 611
Hsp92II	CATG	3 cut(s)	193, 419, 488
HspAI	GCGC	2 cut(s)	152, 221
Kzo9I	GATC	2 cut(s)	174, 477
LguI	GCTCTTC	1 cut(s)	177
LmnI	GCTCC	1 cut(s)	445
Lsp1109I	GCAGC	2 cut(s)	438, 460
LweI	GCATC	1 cut(s)	565
MaeI	CTAG	1 cut(s)	141
MaeIII	GTNAC	2 cut(s)	67, 614
MalI	GATC	2 cut(s)	176, 479
MboI	GATC	2 cut(s)	174, 477
MboII	GAAGA	6 cut(s)	148, 184, 194, 252, 339, 384
MhlI	GDGCHC	1 cut(s)	189
MluCI	AATT	2 cut(s)	278, 580
MmeI	TCCRAC	2 cut(s)	147, 518
MnlI	CCTC	5 cut(s)	138, 403, 430, 534, 601
MseI	TTAA	2 cut(s)	131, 380
MslI	CAYNNNNRTG	1 cut(s)	402
MspA1I	CMGCKG	1 cut(s)	451
MspI	CCGG	1 cut(s)	457
MspR9I	CCNGG	1 cut(s)	595
MvaI	CCWGG	1 cut(s)	595
MwoI	GCNNNNNNNGC	1 cut(s)	227
NdeI	CATATG	1 cut(s)	433
NdeII	GATC	2 cut(s)	174, 477
NlaIII	CATG	3 cut(s)	193, 419, 488
NmeAIII	GCCGAG	1 cut(s)	61
NmuCI	GTSAC	1 cut(s)	614
PciSI	GCTCTTC	1 cut(s)	177
PinAI	ACCGGT	1 cut(s)	456
PkrI	GCNGC	2 cut(s)	450, 453
PshBI	ATTAAT	1 cut(s)	380
Psp124BI	GAGCTC	1 cut(s)	189
Psp6I	CCWGG	1 cut(s)	593
PspGI	CCWGG	1 cut(s)	593
PspPI	GGNCC	1 cut(s)	412
PvuII	CAGCTG	1 cut(s)	451
RseI	CAYNNNNRTG	1 cut(s)	402
SacI	GAGCTC	1 cut(s)	189
SapI	GCTCTTC	1 cut(s)	177
SaqAI	TTAA	2 cut(s)	131, 380
SatI	GCNGC	2 cut(s)	449, 452
Sau3AI	GATC	2 cut(s)	174, 477
Sau96I	GGNCC	1 cut(s)	412
ScrFI	CCNGG	1 cut(s)	595
SduI	GDGCHC	1 cut(s)	189
SetI	ASST	9 cut(s)	12, 29, 107, 189, 236, 327, 333, 453, 562
SfaNI	GCATC	1 cut(s)	565
SfcI	CTRYAG	1 cut(s)	112
SmiMI	CAYNNNNRTG	1 cut(s)	402
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
Sse9I	AATT	2 cut(s)	278, 580
SsiI	CCGC	2 cut(s)	228, 506
SspMI	CTAG	1 cut(s)	141
SstI	GAGCTC	1 cut(s)	189
StyD4I	CCNGG	1 cut(s)	593
TaaI	ACNGT	2 cut(s)	73, 536
TasI	AATT	2 cut(s)	278, 580
Tru1I	TTAA	2 cut(s)	131, 380
Tru9I	TTAA	2 cut(s)	131, 380
TseFI	GTSAC	1 cut(s)	614
TseI	GCWGC	2 cut(s)	448, 451
Tsp45I	GTSAC	1 cut(s)	614
TspDTI	ATGAA	2 cut(s)	420, 432
VspI	ATTAAT	1 cut(s)	380
XapI	RAATTY	2 cut(s)	278, 580
XspI	CTAG	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.