Rw7G028860

May be involved in modulation of pathogen defense and leaf cell death

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Forward (+)
39734960 .. 39741391
6432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G028860.1

Sequence Viewer

Length: 1602 bp
ATGGAGGAGGTGATACAGCAACAAAGGTCATTGGCCGAGACACCAACTTATTCAGTTGCTTCAGTTGTTACTGTTATGGTCTTTGTCTGCCTTCTGGTGCAAAGGTCAATCTACAGATTTGGAAAGTGGTTAAAGAAGACTAGGAGGAAAGCGCTGTTTGTTTCGTTGGAGAAGATCAAGGAAGAGCTCATGCTACTTGGCCTTATATCTTTGTTGCTGGCGCAATCCGCAAGGTGGATTTCTGAGATATGTGTAAACTCTTCTCTTTTCACCAGCAAATTTTATATCTGTTCTGAGAAAGATTACAGCAACACCAATGAGAAGGGCCATGAACCATTTGTTTCATATGAGGGACTGGAGCAGCTGCACCGGTTCTTGTTTGTTCTTGGGATCACCCATGTCTTGTATAGTTGTGTGGCGGTTGGTTTGGCTATGAGCAAGATATACAGTTGGAGGAAATGGGAAAATCAAGCTGGCTTACTGGCTGATGCGAATTTGCAAGCGAAGAAAAACAAGGTGATGAGACGACAATCTACCTTTGTTTTCCAGCACACATCTCATCCGTGGAGCAGGCACCGGATTCTCATTTGGATGCTTTGCTTTCTACGACAATTTAAGAGTTCCATACAGAGATCGGATTACTTGGCTCTACGTTTGGGCTTCATCACTAAGCACAGACTTCCCCATTCTTATGACTTCCATAAATATATGGTCCGGAGTATGGAAGATGAATTTCAAGGGATTCTTGGTATCAGCTGGCCACTTTGGGGTTATGCGATAGTGTGCATTTTCGTAAATGTTCATGGTCTGAATATTTATTTTTGGCTTTCCTTCATCCCTGCCATTCTTGTCATGCTGGTCGGAACAAAGCTCCAGCATGTTGTCTCTTCCTTAGCACTTGAAATTGTAGAACAAACAGGGCCGGCTGTTGGGACTGAAGTAAAGCCACGTGACGATTTGTTTTGGTTTGGGAAACCAGTAATACTACTGCGGTTGATACAATTCATCATATTTCAGAATGCCTTTGAGATGGCAACATTTCTCTGGTCCTTGTGGGGGCTTAAGGAGAGATCATGCTTCATGAAAAACCACGTATTGATAGTTATTCGGTTGGCTTCTGGTGTTCTTGTTCAGTTCTGGTGTAGTCACAGCACAGTGCCTCTAAATGTCATTGTTACGCAGATGGGATCCCGGTGTCAGAAAGCTCTGGTTGCTGAGAGTGTCAGAGAATCACTCCATAGTTGGTGCAAGAGAGTAAAGGAGAGGTCTAAACACTCGCATGCTGCAAGATCAGTTTGTTCACTTGACACAACAATTGATGAGAGGGATGAGATAACAGTTGCATCTGGCACTTTATCTCGGAGCTCTTCCTTGGACTCCCAACATCAAGTAACTGTAGCACCAATGGAACAGCCTCACGCTGTTCTTGAGACTATAGACCTGCCTCAACATGAATACTCGTTCCGGGTGGCAGAGTATTTAGTTGACTCGGTAAGCATCAGTGCATCACAACGTCCTACCACCAGCGAAGAAGATGATGATAGCATTAATGGAGTAGAAGAAAAAGTGGATACTTTATTAGAGTTGTTTCAGAAAACATAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

533

Amino Acids

61.26

Weight (kDa)

8.74

Isoelectric Point (pI)

43.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mlo PF03094 8 - 106 1.4e-33 Mlo family
Mlo PF03094 102 - 437 2.6e-132 Mlo family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1449
AccB1I GGYRCC 1 cut(s) 573
AccIII TCCGGA 1 cut(s) 714
AciI CCGC 3 cut(s) 228, 419, 991
AclWI GGATC 3 cut(s) 398, 1182, 1195
AcoI YGGCCR 2 cut(s) 33, 758
AcsI RAATTY 3 cut(s) 278, 493, 731
AcuI CTGAAG 2 cut(s) 45, 957
AcvI CACGTG 1 cut(s) 950
AfeI AGCGCT 1 cut(s) 153
AfiI CCNNNNNNNGG 5 cut(s) 234, 721, 767, 929, 1056
AflII CTTAAG 1 cut(s) 1061
AgeI ACCGGT 1 cut(s) 369
AgsI TTSAA 2 cut(s) 737, 902
AluBI AGCT 7 cut(s) 187, 364, 473, 756, 871, 1205, 1365
AluI AGCT 7 cut(s) 187, 364, 473, 756, 871, 1205, 1365
Alw21I GWGCWC 2 cut(s) 189, 1367
Alw26I GTCTC 4 cut(s) 32, 517, 889, 1424
AlwI GGATC 3 cut(s) 398, 1182, 1195
Aor13HI TCCGGA 1 cut(s) 714
Aor51HI AGCGCT 1 cut(s) 153
AoxI GGCC 5 cut(s) 33, 199, 325, 758, 920
ApeKI GCWGC 3 cut(s) 361, 364, 1283
ApoI RAATTY 3 cut(s) 278, 493, 731
AseI ATTAAT 1 cut(s) 1548
AsiGI ACCGGT 1 cut(s) 369
AspLEI GCGC 2 cut(s) 154, 223
AspS9I GGNCC 4 cut(s) 325, 712, 920, 1047
AsuC2I CCSGG 2 cut(s) 1192, 1466
AsuHPI GGTGA 4 cut(s) 22, 262, 385, 529
AvaII GGWCC 2 cut(s) 712, 1047
BalI TGGCCA 1 cut(s) 760
BamHI GGATCC 1 cut(s) 1187
BanI GGYRCC 1 cut(s) 573
BanII GRGCYC 2 cut(s) 189, 1367
BbrPI CACGTG 1 cut(s) 950
BbsI GAAGAC 1 cut(s) 143
Bbv12I GWGCWC 2 cut(s) 189, 1367
BbvI GCAGC 3 cut(s) 351, 373, 1270
BccI CCATC 2 cut(s) 1024, 1177
BciVI GTATCC 1 cut(s) 1564
BcnI CCSGG 2 cut(s) 1192, 1466
BcoDI GTCTC 4 cut(s) 32, 517, 889, 1424
BfaI CTAG 1 cut(s) 141
BfmI CTRYAG 3 cut(s) 112, 1395, 1434
BfoI RGCGCY 1 cut(s) 155
BfrI CTTAAG 1 cut(s) 1061
BfuAI ACCTGC 1 cut(s) 1449
BfuI GTATCC 1 cut(s) 1564
BisI GCNGC 3 cut(s) 362, 365, 1284
BlsI GCNGC 3 cut(s) 363, 366, 1285
Bme1390I CCNGG 2 cut(s) 1192, 1466
Bme18I GGWCC 2 cut(s) 712, 1047
BmgT120I GGNCC 4 cut(s) 325, 712, 920, 1047
BmiI GGNNCC 2 cut(s) 575, 1189
BmrFI CCNGG 2 cut(s) 1192, 1466
BmsI GCATC 5 cut(s) 478, 582, 1352, 1506, 1514
BpiI GAAGAC 1 cut(s) 143
BplI GAGNNNNNCTC 2 cut(s) 1218, 1250
BpmI CTGGAG 2 cut(s) 377, 857
Bpu10I CCTNAGC 1 cut(s) 892
BpuEI CTTGAG 1 cut(s) 1448
BpuMI CCSGG 2 cut(s) 1192, 1466
BsaAI YACGTR 2 cut(s) 950, 1093
BsaJI CCNNGG 2 cut(s) 563, 1371
BsaWI WCCGGW 3 cut(s) 369, 576, 714
Bsc4I CCNNNNNNNGG 5 cut(s) 234, 721, 767, 929, 1056
Bse118I RCCGGY 2 cut(s) 369, 922
Bse1I ACTGG 3 cut(s) 360, 486, 977
BseAI TCCGGA 1 cut(s) 714
BseDI CCNNGG 2 cut(s) 563, 1371
BseGI GGATG 4 cut(s) 559, 597, 834, 1333
BseLI CCNNNNNNNGG 5 cut(s) 234, 721, 767, 929, 1056
BseMII CTCAG 3 cut(s) 234, 285, 1206
BseNI ACTGG 3 cut(s) 360, 486, 977
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 3 cut(s) 351, 373, 1270
BsgI GTGCAG 1 cut(s) 350
BshFI GGCC 5 cut(s) 35, 201, 327, 760, 922
BshNI GGYRCC 1 cut(s) 573
BshTI ACCGGT 1 cut(s) 369
BsiHKAI GWGCWC 2 cut(s) 189, 1367
BsiSI CCGG 6 cut(s) 370, 577, 715, 923, 1192, 1465
BslFI GGGAC 2 cut(s) 366, 946
BslI CCNNNNNNNGG 5 cut(s) 234, 721, 767, 929, 1056
BsmAI GTCTC 4 cut(s) 32, 517, 889, 1424
BsmBI CGTCTC 1 cut(s) 517
BsmFI GGGAC 2 cut(s) 366, 946
BsmI GAATGC 1 cut(s) 1024
BsnI GGCC 5 cut(s) 35, 201, 327, 760, 922
Bsp1286I GDGCHC 2 cut(s) 189, 1367
Bsp13I TCCGGA 1 cut(s) 714
Bsp143I GATC 6 cut(s) 174, 390, 632, 1070, 1187, 1289
BspACI CCGC 3 cut(s) 228, 419, 991
BspANI GGCC 5 cut(s) 35, 201, 327, 760, 922
BspCNI CTCAG 3 cut(s) 235, 286, 1207
BspEI TCCGGA 1 cut(s) 714
BspHI TCATGA 1 cut(s) 1080
BspLI GGNNCC 2 cut(s) 575, 1189
BspMI ACCTGC 1 cut(s) 1449
BspPI GGATC 3 cut(s) 398, 1182, 1195
BspQI GCTCTTC 2 cut(s) 177, 1372
BspT107I GGYRCC 1 cut(s) 573
BspTI CTTAAG 1 cut(s) 1061
BsrFI RCCGGY 2 cut(s) 369, 922
BsrI ACTGG 3 cut(s) 360, 486, 977
BssAI RCCGGY 2 cut(s) 369, 922
BssECI CCNNGG 2 cut(s) 563, 1371
BssMI GATC 6 cut(s) 174, 390, 632, 1070, 1187, 1289
BssT1I CCWWGG 1 cut(s) 1371
Bst4CI ACNGT 5 cut(s) 73, 449, 1156, 1339, 1396
Bst6I CTCTTC 4 cut(s) 177, 265, 892, 1372
BstAFI CTTAAG 1 cut(s) 1061
BstBAI YACGTR 2 cut(s) 950, 1093
BstC8I GCNNGC 7 cut(s) 219, 475, 501, 572, 758, 924, 1281
BstDEI CTNAG 5 cut(s) 243, 294, 669, 892, 1215
BstDSI CCRYGG 1 cut(s) 563
BstF5I GGATG 4 cut(s) 559, 597, 834, 1333
BstH2I RGCGCY 1 cut(s) 155
BstHHI GCGC 2 cut(s) 154, 223
BstKTI GATC 6 cut(s) 177, 393, 635, 1073, 1190, 1292
BstMAI GTCTC 4 cut(s) 32, 517, 889, 1424
BstMBI GATC 6 cut(s) 174, 390, 632, 1070, 1187, 1289
BstMWI GCNNNNNNNGC 2 cut(s) 227, 1211
BstNSI RCATGY 2 cut(s) 881, 1283
BstSCI CCNGG 2 cut(s) 1190, 1464
BstSFI CTRYAG 3 cut(s) 112, 1395, 1434
BstV1I GCAGC 3 cut(s) 351, 373, 1270
BstV2I GAAGAC 1 cut(s) 143
BstX2I RGATCY 1 cut(s) 1187
BstYI RGATCY 1 cut(s) 1187
BsuI GTATCC 1 cut(s) 1564
BsuRI GGCC 5 cut(s) 35, 201, 327, 760, 922
BtgI CCRYGG 1 cut(s) 563
BtsCI GGATG 4 cut(s) 559, 597, 834, 1333
BtsIMutI CAGTG 2 cut(s) 1161, 1507
BveI ACCTGC 1 cut(s) 1449
Cac8I GCNNGC 7 cut(s) 219, 475, 501, 572, 758, 924, 1281
CciI TCATGA 1 cut(s) 1080
CfoI GCGC 2 cut(s) 154, 223
Cfr10I RCCGGY 2 cut(s) 369, 922
Cfr13I GGNCC 4 cut(s) 325, 712, 920, 1047
CspAI ACCGGT 1 cut(s) 369
DdeI CTNAG 5 cut(s) 243, 294, 669, 892, 1215
DpnI GATC 6 cut(s) 176, 392, 634, 1072, 1189, 1291
DpnII GATC 6 cut(s) 174, 390, 632, 1070, 1187, 1289
EaeI YGGCCR 2 cut(s) 33, 758
Eam1104I CTCTTC 4 cut(s) 177, 265, 892, 1372
EarI CTCTTC 4 cut(s) 177, 265, 892, 1372
Ecl136II GAGCTC 2 cut(s) 187, 1365
Eco130I CCWWGG 1 cut(s) 1371
Eco24I GRGCYC 2 cut(s) 189, 1367
Eco47I GGWCC 2 cut(s) 712, 1047
Eco47III AGCGCT 1 cut(s) 153
Eco53kI GAGCTC 2 cut(s) 187, 1365
Eco57I CTGAAG 2 cut(s) 45, 957
Eco72I CACGTG 1 cut(s) 950
EcoICRI GAGCTC 2 cut(s) 187, 1365
EcoT14I CCWWGG 1 cut(s) 1371
EcoT38I GRGCYC 2 cut(s) 189, 1367
ErhI CCWWGG 1 cut(s) 1371
Esp3I CGTCTC 1 cut(s) 517
FalI AAGNNNNNCTT 2 cut(s) 729, 761
FaqI GGGAC 2 cut(s) 366, 946
FauNDI CATATG 1 cut(s) 346
Fnu4HI GCNGC 3 cut(s) 362, 365, 1284
FokI GGATG 4 cut(s) 546, 604, 821, 1340
FriOI GRGCYC 2 cut(s) 189, 1367
Fsp4HI GCNGC 3 cut(s) 362, 365, 1284
FspBI CTAG 1 cut(s) 141
GlaI GCGC 2 cut(s) 153, 222
GluI GCNGC 3 cut(s) 362, 365, 1284
GsuI CTGGAG 2 cut(s) 377, 857
HaeII RGCGCY 1 cut(s) 155
HaeIII GGCC 5 cut(s) 35, 201, 327, 760, 922
HapII CCGG 6 cut(s) 370, 577, 715, 923, 1192, 1465
HhaI GCGC 2 cut(s) 154, 223
Hin6I GCGC 2 cut(s) 152, 221
HinP1I GCGC 2 cut(s) 152, 221
HincII GTYRAC 1 cut(s) 1486
HindII GTYRAC 1 cut(s) 1486
HinfI GANTC 5 cut(s) 580, 742, 1229, 1376, 1487
HpaII CCGG 6 cut(s) 370, 577, 715, 923, 1192, 1465
HphI GGTGA 4 cut(s) 22, 262, 385, 529
Hpy166II GTNNAC 3 cut(s) 256, 1301, 1486
Hpy188III TCNNGA 3 cut(s) 715, 1081, 1427
Hpy8I GTNNAC 3 cut(s) 256, 1301, 1486
HpyAV CCTTC 3 cut(s) 101, 316, 841
HpyCH4III ACNGT 5 cut(s) 73, 449, 1156, 1339, 1396
HpyCH4IV ACGT 4 cut(s) 652, 949, 1092, 1513
HpyCH4V TGCA 8 cut(s) 100, 367, 499, 786, 1248, 1286, 1343, 1505
HpyF10VI GCNNNNNNNGC 2 cut(s) 227, 1211
HpyF3I CTNAG 5 cut(s) 243, 294, 669, 892, 1215
HpySE526I ACGT 4 cut(s) 652, 949, 1092, 1513
HspAI GCGC 2 cut(s) 152, 221
Kpn2I TCCGGA 1 cut(s) 714
KroI GCCGGC 1 cut(s) 922
KroNI GCCGGC 1 cut(s) 924
Kzo9I GATC 6 cut(s) 174, 390, 632, 1070, 1187, 1289
LguI GCTCTTC 2 cut(s) 177, 1372
LmnI GCTCC 4 cut(s) 358, 567, 876, 1362
Lsp1109I GCAGC 3 cut(s) 351, 373, 1270
LweI GCATC 5 cut(s) 478, 582, 1352, 1506, 1514
MaeI CTAG 1 cut(s) 141
MaeII ACGT 4 cut(s) 652, 949, 1092, 1513
MaeIII GTNAC 5 cut(s) 67, 950, 1145, 1174, 1390
MalI GATC 6 cut(s) 176, 392, 634, 1072, 1189, 1291
MboI GATC 6 cut(s) 174, 390, 632, 1070, 1187, 1289
MfeI CAATTG 1 cut(s) 1314
MflI RGATCY 1 cut(s) 1187
MhlI GDGCHC 2 cut(s) 189, 1367
MlsI TGGCCA 1 cut(s) 760
MluCI AATT 7 cut(s) 278, 493, 611, 731, 903, 1001, 1314
MluNI TGGCCA 1 cut(s) 760
MlyI GAGTC 2 cut(s) 1370, 1481
MmeI TCCRAC 3 cut(s) 147, 431, 841
MnlI CCTC 8 cut(s) 138, 343, 447, 1170, 1257, 1317, 1425, 1455
Mox20I TGGCCA 1 cut(s) 760
MroI TCCGGA 1 cut(s) 714
MroNI GCCGGC 1 cut(s) 922
MscI TGGCCA 1 cut(s) 760
MseI TTAA 4 cut(s) 131, 615, 1062, 1548
MslI CAYNNNNRTG 3 cut(s) 590, 690, 1278
Msp20I TGGCCA 1 cut(s) 760
MspA1I CMGCKG 2 cut(s) 364, 756
MspCI CTTAAG 1 cut(s) 1061
MspI CCGG 6 cut(s) 370, 577, 715, 923, 1192, 1465
MspR9I CCNGG 2 cut(s) 1192, 1466
MunI CAATTG 1 cut(s) 1314
Mva1269I GAATGC 1 cut(s) 1024
MwoI GCNNNNNNNGC 2 cut(s) 227, 1211
NaeI GCCGGC 1 cut(s) 924
NciI CCSGG 2 cut(s) 1192, 1466
NdeI CATATG 1 cut(s) 346
NdeII GATC 6 cut(s) 174, 390, 632, 1070, 1187, 1289
NgoMIV GCCGGC 1 cut(s) 922
NlaIV GGNNCC 2 cut(s) 575, 1189
NmeAIII GCCGAG 1 cut(s) 61
NmuCI GTSAC 2 cut(s) 950, 1145
NspI RCATGY 2 cut(s) 881, 1283
PaeI GCATGC 1 cut(s) 1283
PagI TCATGA 1 cut(s) 1080
PciSI GCTCTTC 2 cut(s) 177, 1372
PctI GAATGC 1 cut(s) 1024
PdiI GCCGGC 1 cut(s) 924
PfeI GAWTC 3 cut(s) 580, 742, 1229
PinAI ACCGGT 1 cut(s) 369
PkrI GCNGC 3 cut(s) 363, 366, 1285
PleI GAGTC 2 cut(s) 1370, 1481
PmaCI CACGTG 1 cut(s) 950
PmlI CACGTG 1 cut(s) 950
PpsI GAGTC 2 cut(s) 1370, 1481
Ppu21I YACGTR 2 cut(s) 950, 1093
PshBI ATTAAT 1 cut(s) 1548
Psp124BI GAGCTC 2 cut(s) 189, 1367
PspCI CACGTG 1 cut(s) 950
PspN4I GGNNCC 2 cut(s) 575, 1189
PspPI GGNCC 4 cut(s) 325, 712, 920, 1047
PsuI RGATCY 1 cut(s) 1187
PvuII CAGCTG 2 cut(s) 364, 756
RseI CAYNNNNRTG 3 cut(s) 590, 690, 1278
SacI GAGCTC 2 cut(s) 189, 1367
SapI GCTCTTC 2 cut(s) 177, 1372
SaqAI TTAA 4 cut(s) 131, 615, 1062, 1548
SatI GCNGC 3 cut(s) 362, 365, 1284
Sau3AI GATC 6 cut(s) 174, 390, 632, 1070, 1187, 1289
Sau96I GGNCC 4 cut(s) 325, 712, 920, 1047
SchI GAGTC 2 cut(s) 1370, 1481
ScrFI CCNGG 2 cut(s) 1192, 1466
SduI GDGCHC 2 cut(s) 189, 1367
SfaNI GCATC 5 cut(s) 478, 582, 1352, 1506, 1514
SfcI CTRYAG 3 cut(s) 112, 1395, 1434
SinI GGWCC 2 cut(s) 712, 1047
SmiMI CAYNNNNRTG 3 cut(s) 590, 690, 1278
SmlI CTYRAG 2 cut(s) 1061, 1427
SmoI CTYRAG 2 cut(s) 1061, 1427
SphI GCATGC 1 cut(s) 1283
Sse9I AATT 7 cut(s) 278, 493, 611, 731, 903, 1001, 1314
SsiI CCGC 3 cut(s) 228, 419, 991
SspI AATATT 1 cut(s) 814
SspMI CTAG 1 cut(s) 141
SstI GAGCTC 2 cut(s) 189, 1367
StyD4I CCNGG 2 cut(s) 1190, 1464
StyI CCWWGG 1 cut(s) 1371
TaaI ACNGT 5 cut(s) 73, 449, 1156, 1339, 1396
TaiI ACGT 4 cut(s) 655, 952, 1095, 1516
TasI AATT 7 cut(s) 278, 493, 611, 731, 903, 1001, 1314
TfiI GAWTC 3 cut(s) 580, 742, 1229
Tru1I TTAA 4 cut(s) 131, 615, 1062, 1548
Tru9I TTAA 4 cut(s) 131, 615, 1062, 1548
TscAI CASTG 2 cut(s) 1161, 1507
TseFI GTSAC 2 cut(s) 950, 1145
TseI GCWGC 3 cut(s) 361, 364, 1283
Tsp45I GTSAC 2 cut(s) 950, 1145
TspGWI ACGGA 1 cut(s) 552
TspRI CASTG 2 cut(s) 1161, 1507
Vha464I CTTAAG 1 cut(s) 1061
VpaK11BI GGWCC 2 cut(s) 712, 1047
VspI ATTAAT 1 cut(s) 1548
XapI RAATTY 3 cut(s) 278, 493, 731
XceI RCATGY 2 cut(s) 881, 1283
XspI CTAG 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.