Rorug07G0200000

May be involved in modulation of pathogen defense and leaf cell death

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
17359831 .. 17367750
7920 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0200000.1

Sequence Viewer

Length: 1623 bp
ATGAAGGAAGAGGAGGACGGACCACCCAATAGAGAACTGTACGCCCTGCTTCACATATCGCCCGACGCCTCCGATGAGGAAATCAGAAAGTCTTACCGGCAATGGGCCCAAATCTACCACCCAGATAAGATTCAAGCTCCCCATATGAAAGAAGCTGCTACAGAAAACTTCCAACGAATATGCGAAGCTTATGAAATATTGTCGGATGAGAACAAAAGGAAGATATATGACATTTATGGTATGGAAGGATTGACTTCTGGTTTGGAGCTTGGTACAAAGCTGAATAAAGCAGAAGAGCTAAAGGAGGAACTTGAGAGGTTGCGGAAATTGAAGGAACAACAGAAGGTCGCAGCACATTTTCAACCTTCTGGTACCATACTAGCCAATATGTCTTTACCACACTTTTTACGCGGCCACGGCTTCATGAGAGGAATGGCTATGACAAGTTCAGTTCAGTCTCAGATATCAACACGCAATACACTATCAATTGGTGGAAATGTGGCAGTTAATGGGAACTCTGGCGGCGGAGGAGCTACTCTTGTTTTTCAGCATCAGCTTTCACCAGTTTCTTCCATAGAGTTTGTAGGCTCAACCGGCTTAAGGTCGCTTCTTGGGGTGCAGACATCTCGTCACTTATCCCAACATTTAACTGCAACAATGGGACTTGCACTGTCTTTGAAAGACGGTTCGCTGAATCTCTCGAACATGTGGACGCGACAACTGTCTGAAACTACAAGTGGAAGTATAGAGCTTGCTCTGGGCTCTGATTCAACTATTGGAGTAGGATGGCAAAAGAAAGAACAGAAGTCATCTGCTTCTGGACAGCTGAAGTTGGGAATAAATTCTTTTGAGGCGTCAGCCAATTATACTCGTCGTTTTTCAAAAAAGTCTCATGGTCATCTAGAAGGCAAAATTGGAAGCCATGCCCTTGTGATCGAAGTTGGTGGTGGAAGAAAGTTATCTAAATTTAGCACTGTCCGCATGTTGTATTCAATAGGAATTCAGGGTATCTCTTGGAAATTGGAATTGCATCGTGGAGGCCAAAAGTTAATTGTTCCTATTTTGCTTTCAAGGCATTTGAATCCCGTGTTTGCAACTGGAGCATTCTTAATTCCAACATCGTTGTACTTCTTAGCCAAGAAATTCATCCTCAAACCTTATTATCTTAAGAGGGAAAAGCAGAAGGCTCTAGAGAACATGGAAAGAACCTCTGCCAAGGTTCAAGAGGCACGAGCAGCAGCAGATAAAGCTAAGCAGTTATTACAAAATGTAGCAAATAGGAAACAGAAAAAGCAGCAAGAATTAGGGGGCCTGGTAATCACGAAGGCATTGTATGGGAGTGTTAAAGCTTTGAAGAAAAGGGATGAACCTGTAGAACCAAATGATGAATTAGCTTCACAGTTCATTGATGTTGCGCTGCCTCTAAATTTCCTTGTCAGCGATGATGGGCAACTCAAGCTTCACGAAGGCGTAAAGAAGTCTGGCATTATGGGCTTTTGTGATCCATGTCCTGGAGAGCCTAAGCAGTTGTATGTGGAGTACACTTATGGTGGCAATATATACAAGGTGGTAGTTGATGATTATGCCGAGTTGCTTATACCTCAGGAAAGGCACAGAATTTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

540

Amino Acids

59.89

Weight (kDa)

9.33

Isoelectric Point (pI)

37.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 13 - 77 1.7e-21 DnaJ domain
DNAJC11_beta-barrel PF22774 145 - 350 2.8e-28 DNAJC11, beta-barrel domain
DnaJ-like_C11_C PF11875 399 - 534 3.6e-44 DnaJ-like protein C11, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 371
AccB1I GGYRCC 1 cut(s) 371
AccB7I CCANNNNNTGG 1 cut(s) 1511
AccII CGCG 2 cut(s) 411, 715
AciI CCGC 5 cut(s) 322, 411, 522, 525, 979
AclWI GGATC 1 cut(s) 1496
AcoI YGGCCR 1 cut(s) 412
AcsI RAATTY 6 cut(s) 841, 965, 999, 1142, 1426, 1617
AcuI CTGAAG 1 cut(s) 848
AcyI GRCGYC 2 cut(s) 66, 854
AfaI GTAC 5 cut(s) 41, 274, 373, 1127, 1541
AfiI CCNNNNNNNGG 3 cut(s) 103, 600, 1511
AflII CTTAAG 2 cut(s) 598, 1166
AflIII ACRYGT 1 cut(s) 705
AhdI GACNNNNNGTC 1 cut(s) 627
AjnI CCWGG 2 cut(s) 1311, 1510
AjuI GAANNNNNNNTTGG 2 cut(s) 897, 929
Alw26I GTCTC 2 cut(s) 462, 894
AlwI GGATC 1 cut(s) 1496
AoxI GGCC 4 cut(s) 105, 412, 1039, 1309
ApaI GGGCCC 1 cut(s) 109
ApeKI GCWGC 6 cut(s) 155, 350, 1235, 1238, 1294, 1417
ApoI RAATTY 6 cut(s) 841, 965, 999, 1142, 1426, 1617
ArsI GACNNNNNNTTYG 2 cut(s) 244, 276
Asp700I GAANNNNTTC 1 cut(s) 841
Asp718I GGTACC 1 cut(s) 371
AspLEI GCGC 1 cut(s) 1417
AspS9I GGNCC 4 cut(s) 20, 105, 106, 1309
AsuHPI GGTGA 1 cut(s) 552
AvaII GGWCC 1 cut(s) 20
AxyI CCTNAGG 1 cut(s) 1602
BaeGI GKGCMC 1 cut(s) 109
BanI GGYRCC 1 cut(s) 371
BanII GRGCYC 2 cut(s) 109, 764
BauI CACGAG 1 cut(s) 1230
BbvI GCAGC 6 cut(s) 142, 362, 1247, 1250, 1306, 1404
BccI CCATC 2 cut(s) 780, 1439
BceAI ACGGC 1 cut(s) 433
BcgI CGANNNNNNTGC 2 cut(s) 608, 642
BciT130I CCWGG 2 cut(s) 1313, 1512
BcoDI GTCTC 2 cut(s) 462, 894
BfaI CTAG 3 cut(s) 380, 902, 1190
BfmI CTRYAG 2 cut(s) 159, 1371
BfrI CTTAAG 2 cut(s) 598, 1166
BisI GCNGC 8 cut(s) 156, 351, 412, 523, 1236, 1239, 1295, 1418
BlpI GCTNAGC 1 cut(s) 1251
BlsI GCNGC 8 cut(s) 157, 352, 413, 524, 1237, 1240, 1296, 1419
Bme1390I CCNGG 2 cut(s) 1313, 1512
Bme18I GGWCC 1 cut(s) 20
BmeRI GACNNNNNGTC 1 cut(s) 627
BmgT120I GGNCC 4 cut(s) 20, 105, 106, 1309
BmiI GGNNCC 3 cut(s) 107, 373, 1310
BmrFI CCNGG 2 cut(s) 1313, 1512
BmsI GCATC 2 cut(s) 559, 1039
BoxI GACNNNNGTC 1 cut(s) 721
BpmI CTGGAG 2 cut(s) 1119, 1533
Bpu10I CCTNAGC 1 cut(s) 1521
Bpu1102I GCTNAGC 1 cut(s) 1251
BpuEI CTTGAG 2 cut(s) 332, 1439
BsaHI GRCGYC 2 cut(s) 66, 854
BsaJI CCNNGG 2 cut(s) 415, 1215
Bsc4I CCNNNNNNNGG 3 cut(s) 103, 600, 1511
Bse118I RCCGGY 2 cut(s) 96, 593
Bse1I ACTGG 2 cut(s) 563, 1102
Bse21I CCTNAGG 1 cut(s) 1602
Bse3DI GCAATG 1 cut(s) 107
BseBI CCWGG 2 cut(s) 1313, 1512
BseDI CCNNGG 2 cut(s) 415, 1215
BseGI GGATG 4 cut(s) 211, 791, 1146, 1369
BseLI CCNNNNNNNGG 3 cut(s) 103, 600, 1511
BseMI GCAATG 1 cut(s) 107
BseMII CTCAG 2 cut(s) 473, 1616
BseNI ACTGG 2 cut(s) 563, 1102
BseRI GAGGAG 2 cut(s) 26, 543
BseSI GKGCMC 1 cut(s) 109
BseXI GCAGC 6 cut(s) 142, 362, 1247, 1250, 1306, 1404
BsgI GTGCAG 1 cut(s) 638
Bsh1236I CGCG 2 cut(s) 411, 715
BshFI GGCC 4 cut(s) 107, 414, 1041, 1311
BshNI GGYRCC 1 cut(s) 371
BsiSI CCGG 2 cut(s) 97, 594
BslFI GGGAC 1 cut(s) 675
BslI CCNNNNNNNGG 3 cut(s) 103, 600, 1511
BsmAI GTCTC 2 cut(s) 462, 894
BsmFI GGGAC 1 cut(s) 675
BsmI GAATGC 1 cut(s) 1103
BsnI GGCC 4 cut(s) 107, 414, 1041, 1311
Bsp120I GGGCCC 1 cut(s) 105
Bsp1286I GDGCHC 2 cut(s) 109, 764
Bsp143I GATC 2 cut(s) 933, 1501
Bsp1720I GCTNAGC 1 cut(s) 1251
BspACI CCGC 5 cut(s) 322, 411, 522, 525, 979
BspANI GGCC 4 cut(s) 107, 414, 1041, 1311
BspCNI CTCAG 2 cut(s) 472, 1615
BspFNI CGCG 2 cut(s) 411, 715
BspHI TCATGA 1 cut(s) 423
BspLI GGNNCC 3 cut(s) 107, 373, 1310
BspPI GGATC 1 cut(s) 1496
BspQI GCTCTTC 1 cut(s) 288
BspT107I GGYRCC 1 cut(s) 371
BspTI CTTAAG 2 cut(s) 598, 1166
BsrDI GCAATG 1 cut(s) 107
BsrFI RCCGGY 2 cut(s) 96, 593
BsrI ACTGG 2 cut(s) 563, 1102
BssAI RCCGGY 2 cut(s) 96, 593
BssECI CCNNGG 2 cut(s) 415, 1215
BssMI GATC 2 cut(s) 933, 1501
BssNI GRCGYC 2 cut(s) 66, 854
BssSI CACGAG 1 cut(s) 1230
BssT1I CCWWGG 1 cut(s) 1215
Bst2BI CACGAG 1 cut(s) 1230
Bst2UI CCWGG 2 cut(s) 1313, 1512
Bst4CI ACNGT 6 cut(s) 39, 672, 686, 723, 976, 1401
Bst6I CTCTTC 2 cut(s) 3, 288
BstACI GRCGYC 2 cut(s) 66, 854
BstAFI CTTAAG 2 cut(s) 598, 1166
BstC8I GCNNGC 1 cut(s) 753
BstDEI CTNAG 5 cut(s) 459, 1132, 1251, 1521, 1602
BstDSI CCRYGG 1 cut(s) 415
BstF5I GGATG 4 cut(s) 211, 791, 1146, 1369
BstFNI CGCG 2 cut(s) 411, 715
BstHHI GCGC 1 cut(s) 1417
BstKTI GATC 2 cut(s) 936, 1504
BstMAI GTCTC 2 cut(s) 462, 894
BstMBI GATC 2 cut(s) 933, 1501
BstMWI GCNNNNNNNGC 9 cut(s) 417, 594, 978, 1072, 1100, 1235, 1247, 1456, 1491
BstNI CCWGG 2 cut(s) 1313, 1512
BstNSI RCATGY 2 cut(s) 709, 985
BstPAI GACNNNNGTC 1 cut(s) 721
BstSCI CCNGG 2 cut(s) 1311, 1510
BstSFI CTRYAG 2 cut(s) 159, 1371
BstSLI GKGCMC 1 cut(s) 109
BstUI CGCG 2 cut(s) 411, 715
BstV1I GCAGC 6 cut(s) 142, 362, 1247, 1250, 1306, 1404
Bsu36I CCTNAGG 1 cut(s) 1602
BsuRI GGCC 4 cut(s) 107, 414, 1041, 1311
BtgI CCRYGG 1 cut(s) 415
BtgZI GCGATG 1 cut(s) 1455
BtsCI GGATG 4 cut(s) 211, 791, 1146, 1369
BtsIMutI CAGTG 2 cut(s) 668, 972
Cac8I GCNNGC 1 cut(s) 753
CciI TCATGA 1 cut(s) 423
CfoI GCGC 1 cut(s) 1417
Cfr10I RCCGGY 2 cut(s) 96, 593
Cfr13I GGNCC 4 cut(s) 20, 105, 106, 1309
CseI GACGC 3 cut(s) 74, 721, 843
Csp6I GTAC 5 cut(s) 40, 273, 372, 1126, 1540
CviAII CATG 7 cut(s) 424, 706, 893, 923, 982, 1198, 1506
CviQI GTAC 5 cut(s) 40, 273, 372, 1126, 1540
DdeI CTNAG 5 cut(s) 459, 1132, 1251, 1521, 1602
DpnI GATC 2 cut(s) 935, 1503
DpnII GATC 2 cut(s) 933, 1501
DriI GACNNNNNGTC 1 cut(s) 627
EaeI YGGCCR 1 cut(s) 412
Eam1104I CTCTTC 2 cut(s) 3, 288
Eam1105I GACNNNNNGTC 1 cut(s) 627
EarI CTCTTC 2 cut(s) 3, 288
EciI GGCGGA 1 cut(s) 540
Eco130I CCWWGG 1 cut(s) 1215
Eco24I GRGCYC 2 cut(s) 109, 764
Eco32I GATATC 1 cut(s) 465
Eco47I GGWCC 1 cut(s) 20
Eco57I CTGAAG 1 cut(s) 848
Eco81I CCTNAGG 1 cut(s) 1602
EcoO109I RGGNCCY 1 cut(s) 1309
EcoRI GAATTC 1 cut(s) 999
EcoRII CCWGG 2 cut(s) 1311, 1510
EcoRV GATATC 1 cut(s) 465
EcoT14I CCWWGG 1 cut(s) 1215
EcoT38I GRGCYC 2 cut(s) 109, 764
ErhI CCWWGG 1 cut(s) 1215
FaeI CATG 7 cut(s) 427, 709, 896, 926, 985, 1201, 1509
FaqI GGGAC 1 cut(s) 675
FatI CATG 7 cut(s) 423, 705, 892, 922, 981, 1197, 1505
FauNDI CATATG 1 cut(s) 144
Fnu4HI GCNGC 8 cut(s) 156, 351, 412, 523, 1236, 1239, 1295, 1418
FokI GGATG 4 cut(s) 218, 798, 1133, 1376
FriOI GRGCYC 2 cut(s) 109, 764
Fsp4HI GCNGC 8 cut(s) 156, 351, 412, 523, 1236, 1239, 1295, 1418
FspBI CTAG 3 cut(s) 380, 902, 1190
GlaI GCGC 1 cut(s) 1416
GluI GCNGC 8 cut(s) 156, 351, 412, 523, 1236, 1239, 1295, 1418
GsuI CTGGAG 2 cut(s) 1119, 1533
HaeIII GGCC 4 cut(s) 107, 414, 1041, 1311
HapII CCGG 2 cut(s) 97, 594
HgaI GACGC 3 cut(s) 74, 721, 843
HhaI GCGC 1 cut(s) 1417
Hin1I GRCGYC 2 cut(s) 66, 854
Hin1II CATG 7 cut(s) 427, 709, 896, 926, 985, 1201, 1509
Hin6I GCGC 1 cut(s) 1415
HinP1I GCGC 1 cut(s) 1415
HindIII AAGCTT 3 cut(s) 186, 1347, 1457
HinfI GANTC 4 cut(s) 130, 694, 767, 1081
HpaII CCGG 2 cut(s) 97, 594
HphI GGTGA 1 cut(s) 552
Hpy166II GTNNAC 2 cut(s) 711, 1542
Hpy188I TCNGA 6 cut(s) 73, 86, 205, 462, 727, 766
Hpy188III TCNNGA 9 cut(s) 424, 700, 819, 902, 1190, 1223, 1321, 1463, 1604
Hpy8I GTNNAC 2 cut(s) 711, 1542
Hpy99I CGWCG 2 cut(s) 68, 876
HpyAV CCTTC 8 cut(s) 239, 325, 337, 375, 899, 1177, 1318, 1460
HpyCH4III ACNGT 6 cut(s) 39, 672, 686, 723, 976, 1401
HpyCH4V TGCA 5 cut(s) 619, 653, 668, 1030, 1094
HpyF10VI GCNNNNNNNGC 9 cut(s) 417, 594, 978, 1072, 1100, 1235, 1247, 1456, 1491
HpyF3I CTNAG 5 cut(s) 459, 1132, 1251, 1521, 1602
Hsp92I GRCGYC 2 cut(s) 66, 854
Hsp92II CATG 7 cut(s) 427, 709, 896, 926, 985, 1201, 1509
HspAI GCGC 1 cut(s) 1415
KpnI GGTACC 1 cut(s) 375
Kzo9I GATC 2 cut(s) 933, 1501
LguI GCTCTTC 1 cut(s) 288
LmnI GCTCC 4 cut(s) 142, 265, 530, 1100
Lsp1109I GCAGC 6 cut(s) 142, 362, 1247, 1250, 1306, 1404
LweI GCATC 2 cut(s) 559, 1039
MaeI CTAG 3 cut(s) 380, 902, 1190
MaeIII GTNAC 1 cut(s) 629
MalI GATC 2 cut(s) 935, 1503
MboI GATC 2 cut(s) 933, 1501
MboII GAAGA 6 cut(s) 20, 232, 305, 561, 963, 1366
MfeI CAATTG 1 cut(s) 486
MhlI GDGCHC 2 cut(s) 109, 764
MmeI TCCRAC 3 cut(s) 183, 196, 1139
MroXI GAANNNNTTC 1 cut(s) 841
MseI TTAA 7 cut(s) 507, 599, 647, 1049, 1109, 1167, 1344
MspA1I CMGCKG 1 cut(s) 826
MspCI CTTAAG 2 cut(s) 598, 1166
MspI CCGG 2 cut(s) 97, 594
MspR9I CCNGG 2 cut(s) 1313, 1512
MunI CAATTG 1 cut(s) 486
Mva1269I GAATGC 1 cut(s) 1103
MvaI CCWGG 2 cut(s) 1313, 1512
MvnI CGCG 2 cut(s) 411, 715
MwoI GCNNNNNNNGC 9 cut(s) 417, 594, 978, 1072, 1100, 1235, 1247, 1456, 1491
NdeI CATATG 1 cut(s) 144
NdeII GATC 2 cut(s) 933, 1501
NlaIII CATG 7 cut(s) 427, 709, 896, 926, 985, 1201, 1509
NlaIV GGNNCC 3 cut(s) 107, 373, 1310
NmeAIII GCCGAG 1 cut(s) 1612
NmuCI GTSAC 1 cut(s) 629
NspI RCATGY 2 cut(s) 709, 985
PagI TCATGA 1 cut(s) 423
PciI ACATGT 1 cut(s) 705
PciSI GCTCTTC 1 cut(s) 288
PctI GAATGC 1 cut(s) 1103
PdmI GAANNNNTTC 1 cut(s) 841
PfeI GAWTC 4 cut(s) 130, 694, 767, 1081
PflMI CCANNNNNTGG 1 cut(s) 1511
PfoI TCCNGGA 1 cut(s) 1510
PkrI GCNGC 8 cut(s) 157, 352, 413, 524, 1237, 1240, 1296, 1419
PscI ACATGT 1 cut(s) 705
PshAI GACNNNNGTC 1 cut(s) 721
Psp6I CCWGG 2 cut(s) 1311, 1510
PspGI CCWGG 2 cut(s) 1311, 1510
PspN4I GGNNCC 3 cut(s) 107, 373, 1310
PspOMI GGGCCC 1 cut(s) 105
PspPI GGNCC 4 cut(s) 20, 105, 106, 1309
PvuII CAGCTG 1 cut(s) 826
RsaI GTAC 5 cut(s) 41, 274, 373, 1127, 1541
RsaNI GTAC 5 cut(s) 40, 273, 372, 1126, 1540
SapI GCTCTTC 1 cut(s) 288
SaqAI TTAA 7 cut(s) 507, 599, 647, 1049, 1109, 1167, 1344
SatI GCNGC 8 cut(s) 156, 351, 412, 523, 1236, 1239, 1295, 1418
Sau3AI GATC 2 cut(s) 933, 1501
Sau96I GGNCC 4 cut(s) 20, 105, 106, 1309
ScrFI CCNGG 2 cut(s) 1313, 1512
SduI GDGCHC 2 cut(s) 109, 764
SfaNI GCATC 2 cut(s) 559, 1039
SfcI CTRYAG 2 cut(s) 159, 1371
SinI GGWCC 1 cut(s) 20
SmlI CTYRAG 4 cut(s) 311, 598, 1166, 1454
SmoI CTYRAG 4 cut(s) 311, 598, 1166, 1454
SsiI CCGC 5 cut(s) 322, 411, 522, 525, 979
SspI AATATT 1 cut(s) 198
SspMI CTAG 3 cut(s) 380, 902, 1190
StyD4I CCNGG 2 cut(s) 1311, 1510
StyI CCWWGG 1 cut(s) 1215
TaaI ACNGT 6 cut(s) 39, 672, 686, 723, 976, 1401
TaqI TCGA 2 cut(s) 701, 936
TatI WGTACW 2 cut(s) 1125, 1539
TauI GCSGC 2 cut(s) 414, 525
TfiI GAWTC 4 cut(s) 130, 694, 767, 1081
Tru1I TTAA 7 cut(s) 507, 599, 647, 1049, 1109, 1167, 1344
Tru9I TTAA 7 cut(s) 507, 599, 647, 1049, 1109, 1167, 1344
TscAI CASTG 2 cut(s) 675, 979
TseFI GTSAC 1 cut(s) 629
TseI GCWGC 6 cut(s) 155, 350, 1235, 1238, 1294, 1417
Tsp45I GTSAC 1 cut(s) 629
TspDTI ATGAA 8 cut(s) 17, 161, 207, 412, 1135, 1380, 1393, 1401
TspGWI ACGGA 1 cut(s) 33
TspRI CASTG 2 cut(s) 675, 979
Van91I CCANNNNNTGG 1 cut(s) 1511
Vha464I CTTAAG 2 cut(s) 598, 1166
VpaK11BI GGWCC 1 cut(s) 20
XapI RAATTY 6 cut(s) 841, 965, 999, 1142, 1426, 1617
XbaI TCTAGA 2 cut(s) 901, 1189
XceI RCATGY 2 cut(s) 709, 985
XmnI GAANNNNTTC 1 cut(s) 841
XspI CTAG 3 cut(s) 380, 902, 1190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.