Rroxscaffold_3G00238800

May be involved in modulation of pathogen defense and leaf cell death

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
27042011 .. 27049870
7860 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00238800.1

Sequence Viewer

Length: 1431 bp
ATGGAGGAGGTGATACAGCAACAAAGGTCATTGGCCGAGACACCAACTTATTCAGTTGCTTCAGTTGTTACAGTTATGGTCTTTGTCTGCCTTCTGGTGCAAAGGTCAATCTACAGATTTGGAAAGTGGTTAAAGAAGACTAGGAGGAAAGCGCTGTTTGTTTCGTTGGAGAAGATCAAGGAAGAGCTCATGCTACTTGGCCTTATATCTTTGTTGCTGGCGCAATCCGCAAGGTGGATTTCTGAGATATGTGTAAACTCTTCTCTTTTCACCAGCAAATTTTATATCTGTTCTGAGAAAGATTACAGCAACACCAATGAGAAGGTCAAGCTTGAGAGTTCTTTTTCTTCTCCCAATGCGACTGATATTCCAGCAGGATTAATCGATCTTTCTTCTCATCAATGTGCTGAGGGCCATGAACCATTTGTTTCATATGAGGGACTGGAGCAGCTGCACCGGTTCTTGTTTGTTCTTGGGATCACCCATGTCCTGTATAGTTGTGTGGCGGTTGGTTTGGCTATGAGCAAGATATACAGTTGGAGGAAATGGGAAAATCAAGCTGGTTTACTGGCTGATGCAAATTTGCAAGGTCTGAATATTTATTTTTGGCTTTCCTTCATCCCTGCCATTCTTGTCATGCTGGTTGGAACAAAGCTCCAGCATGTCGTCTCTTCCTTAGCACTTGAAATTGTAGAACAAACAGGGCCGGCTGTTGGGACTGAAGTAAAGCCACGTGACGATTTGTTTTGGTTTGGGAAACCAGTAATACTACTGCGGTTGATACAATTCATCATATTTCAGAATGCCTTTGAGATGGCAACATTTCTCTGGTCCTTGTTTGGCTCATATGTTTCTGCTATTAAATGGAACCTGTTGTATAATTGGGGACTTAAGGAGAGATCATGCTTCATGAAAAACCACGTATTGATAGTTATTCGGTTGGCTTCTGGTGTTCTTGTTCAGTTCTGGTGTAGTCACAGCACAGTGCCTGTAAATGTCATTGTTACACAGATGGGATCCCGGTGTAAGAAAGCTCTGGTTGCTGAGAGTGTCAGAGAATCACTCCATAGTTGGTGCAAGAGAGTAAAGGAGAGGTCTAAACACTCGCATGCTGCAAGATCAGTTTGTTCACTTGACACAACAATTGATGAGAGGGATGAGATAACAGTTGCATCTGGCACTTTATCTCGGAGCTCTTCCTTGGACTCCCTACATCAAGTAACTGTAGCACCAATGGAACAGCCTCAGGCTGTTCTTGAGACTACAGACCCGCCTCAACATGAATACTCGTTCCGGGTGGCAGAGTATTTAGCTGACTCGGTAAGCATCAGTGCATCACAACGTCCTACCACCAGCGAAGAAGATGATGACAGCATTAATGGAGTAGAAGAAAAAGTGGATACTTTATTAGAGTTGTTTCAGAAAACATAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

476

Amino Acids

53.67

Weight (kDa)

6.33

Isoelectric Point (pI)

39.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mlo PF03094 8 - 187 3.5e-59 Mlo family
Mlo PF03094 193 - 380 1.7e-56 Mlo family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 228, 506, 775, 1271
AclWI GGATC 3 cut(s) 485, 1011, 1024
AcoI YGGCCR 1 cut(s) 33
AcsI RAATTY 2 cut(s) 278, 580
AcuI CTGAAG 2 cut(s) 45, 741
AcvI CACGTG 1 cut(s) 734
AfeI AGCGCT 1 cut(s) 153
AfiI CCNNNNNNNGG 2 cut(s) 234, 713
AflII CTTAAG 1 cut(s) 890
AgeI ACCGGT 1 cut(s) 456
AgsI TTSAA 1 cut(s) 686
AluBI AGCT 8 cut(s) 187, 331, 451, 560, 655, 1034, 1194, 1313
AluI AGCT 8 cut(s) 187, 331, 451, 560, 655, 1034, 1194, 1313
Alw21I GWGCWC 2 cut(s) 189, 1196
Alw26I GTCTC 3 cut(s) 32, 673, 1253
AlwI GGATC 3 cut(s) 485, 1011, 1024
AlwNI CAGNNNCTG 1 cut(s) 989
Aor51HI AGCGCT 1 cut(s) 153
AoxI GGCC 4 cut(s) 33, 199, 412, 704
ApeKI GCWGC 3 cut(s) 448, 451, 1112
ApoI RAATTY 2 cut(s) 278, 580
AseI ATTAAT 2 cut(s) 380, 1377
AsiGI ACCGGT 1 cut(s) 456
AspLEI GCGC 2 cut(s) 154, 223
AspS9I GGNCC 3 cut(s) 412, 704, 831
AsuC2I CCSGG 2 cut(s) 1021, 1295
AsuHPI GGTGA 3 cut(s) 22, 262, 472
AvaII GGWCC 1 cut(s) 831
AxyI CCTNAGG 1 cut(s) 1245
BamHI GGATCC 1 cut(s) 1016
BanII GRGCYC 2 cut(s) 189, 1196
BbrPI CACGTG 1 cut(s) 734
BbsI GAAGAC 1 cut(s) 143
Bbv12I GWGCWC 2 cut(s) 189, 1196
BbvCI CCTCAGC 1 cut(s) 408
BbvI GCAGC 3 cut(s) 438, 460, 1099
BccI CCATC 2 cut(s) 808, 1006
BciVI GTATCC 1 cut(s) 1393
BcnI CCSGG 2 cut(s) 1021, 1295
BcoDI GTCTC 3 cut(s) 32, 673, 1253
BfaI CTAG 1 cut(s) 141
BfmI CTRYAG 3 cut(s) 112, 1224, 1263
BfoI RGCGCY 1 cut(s) 155
BfrI CTTAAG 1 cut(s) 890
BfuI GTATCC 1 cut(s) 1393
BisI GCNGC 3 cut(s) 449, 452, 1113
BlsI GCNGC 3 cut(s) 450, 453, 1114
Bme1390I CCNGG 2 cut(s) 1021, 1295
Bme18I GGWCC 1 cut(s) 831
BmgT120I GGNCC 3 cut(s) 412, 704, 831
BmiI GGNNCC 2 cut(s) 869, 1018
BmrFI CCNGG 2 cut(s) 1021, 1295
BmsI GCATC 4 cut(s) 565, 1181, 1335, 1343
BpiI GAAGAC 1 cut(s) 143
BplI GAGNNNNNCTC 2 cut(s) 1047, 1079
BpmI CTGGAG 2 cut(s) 464, 641
Bpu10I CCTNAGC 2 cut(s) 408, 676
BpuEI CTTGAG 2 cut(s) 353, 1277
BpuMI CCSGG 2 cut(s) 1021, 1295
Bsa29I ATCGAT 1 cut(s) 384
BsaAI YACGTR 2 cut(s) 734, 922
BsaJI CCNNGG 1 cut(s) 1200
BsaWI WCCGGW 1 cut(s) 456
Bsc4I CCNNNNNNNGG 2 cut(s) 234, 713
Bse118I RCCGGY 2 cut(s) 456, 706
Bse1I ACTGG 3 cut(s) 447, 573, 761
Bse21I CCTNAGG 1 cut(s) 1245
BseCI ATCGAT 1 cut(s) 384
BseDI CCNNGG 1 cut(s) 1200
BseGI GGATG 2 cut(s) 618, 1162
BseLI CCNNNNNNNGG 2 cut(s) 234, 713
BseMII CTCAG 5 cut(s) 234, 285, 399, 1035, 1259
BseNI ACTGG 3 cut(s) 447, 573, 761
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 3 cut(s) 438, 460, 1099
BsgI GTGCAG 1 cut(s) 437
BshFI GGCC 4 cut(s) 35, 201, 414, 706
BshTI ACCGGT 1 cut(s) 456
BshVI ATCGAT 1 cut(s) 384
BsiHKAI GWGCWC 2 cut(s) 189, 1196
BsiSI CCGG 4 cut(s) 457, 707, 1021, 1294
BslFI GGGAC 3 cut(s) 453, 730, 900
BslI CCNNNNNNNGG 2 cut(s) 234, 713
BsmAI GTCTC 3 cut(s) 32, 673, 1253
BsmBI CGTCTC 1 cut(s) 673
BsmFI GGGAC 3 cut(s) 453, 730, 900
BsmI GAATGC 1 cut(s) 808
BsnI GGCC 4 cut(s) 35, 201, 414, 706
Bsp1286I GDGCHC 2 cut(s) 189, 1196
Bsp143I GATC 6 cut(s) 174, 385, 477, 899, 1016, 1118
BspACI CCGC 4 cut(s) 228, 506, 775, 1271
BspANI GGCC 4 cut(s) 35, 201, 414, 706
BspCNI CTCAG 5 cut(s) 235, 286, 400, 1036, 1258
BspDI ATCGAT 1 cut(s) 384
BspHI TCATGA 1 cut(s) 909
BspLI GGNNCC 2 cut(s) 869, 1018
BspPI GGATC 3 cut(s) 485, 1011, 1024
BspQI GCTCTTC 2 cut(s) 177, 1201
BspTI CTTAAG 1 cut(s) 890
BsrFI RCCGGY 2 cut(s) 456, 706
BsrI ACTGG 3 cut(s) 447, 573, 761
BssAI RCCGGY 2 cut(s) 456, 706
BssECI CCNNGG 1 cut(s) 1200
BssMI GATC 6 cut(s) 174, 385, 477, 899, 1016, 1118
BssT1I CCWWGG 1 cut(s) 1200
Bst4CI ACNGT 5 cut(s) 73, 536, 985, 1168, 1225
Bst6I CTCTTC 4 cut(s) 177, 265, 676, 1201
BstAFI CTTAAG 1 cut(s) 890
BstBAI YACGTR 2 cut(s) 734, 922
BstC8I GCNNGC 3 cut(s) 219, 708, 1110
BstDEI CTNAG 6 cut(s) 243, 294, 408, 676, 1044, 1245
BstF5I GGATG 2 cut(s) 618, 1162
BstH2I RGCGCY 1 cut(s) 155
BstHHI GCGC 2 cut(s) 154, 223
BstKTI GATC 6 cut(s) 177, 388, 480, 902, 1019, 1121
BstMAI GTCTC 3 cut(s) 32, 673, 1253
BstMBI GATC 6 cut(s) 174, 385, 477, 899, 1016, 1118
BstMWI GCNNNNNNNGC 2 cut(s) 227, 1040
BstNSI RCATGY 2 cut(s) 665, 1112
BstSCI CCNGG 2 cut(s) 1019, 1293
BstSFI CTRYAG 3 cut(s) 112, 1224, 1263
BstV1I GCAGC 3 cut(s) 438, 460, 1099
BstV2I GAAGAC 1 cut(s) 143
BstX2I RGATCY 1 cut(s) 1016
BstYI RGATCY 1 cut(s) 1016
Bsu15I ATCGAT 1 cut(s) 384
Bsu36I CCTNAGG 1 cut(s) 1245
BsuI GTATCC 1 cut(s) 1393
BsuRI GGCC 4 cut(s) 35, 201, 414, 706
BsuTUI ATCGAT 1 cut(s) 384
BtsCI GGATG 2 cut(s) 618, 1162
BtsIMutI CAGTG 2 cut(s) 990, 1336
Cac8I GCNNGC 3 cut(s) 219, 708, 1110
CaiI CAGNNNCTG 1 cut(s) 989
CciI TCATGA 1 cut(s) 909
CfoI GCGC 2 cut(s) 154, 223
Cfr10I RCCGGY 2 cut(s) 456, 706
Cfr13I GGNCC 3 cut(s) 412, 704, 831
ClaI ATCGAT 1 cut(s) 384
CspAI ACCGGT 1 cut(s) 456
CviAII CATG 9 cut(s) 190, 416, 485, 637, 662, 903, 910, 1109, 1280
DdeI CTNAG 6 cut(s) 243, 294, 408, 676, 1044, 1245
DpnI GATC 6 cut(s) 176, 387, 479, 901, 1018, 1120
DpnII GATC 6 cut(s) 174, 385, 477, 899, 1016, 1118
EaeI YGGCCR 1 cut(s) 33
Eam1104I CTCTTC 4 cut(s) 177, 265, 676, 1201
EarI CTCTTC 4 cut(s) 177, 265, 676, 1201
Ecl136II GAGCTC 2 cut(s) 187, 1194
Eco130I CCWWGG 1 cut(s) 1200
Eco24I GRGCYC 2 cut(s) 189, 1196
Eco47I GGWCC 1 cut(s) 831
Eco47III AGCGCT 1 cut(s) 153
Eco53kI GAGCTC 2 cut(s) 187, 1194
Eco57I CTGAAG 2 cut(s) 45, 741
Eco72I CACGTG 1 cut(s) 734
Eco81I CCTNAGG 1 cut(s) 1245
EcoICRI GAGCTC 2 cut(s) 187, 1194
EcoT14I CCWWGG 1 cut(s) 1200
EcoT38I GRGCYC 2 cut(s) 189, 1196
ErhI CCWWGG 1 cut(s) 1200
Esp3I CGTCTC 1 cut(s) 673
FaeI CATG 9 cut(s) 193, 419, 488, 640, 665, 906, 913, 1112, 1283
FaqI GGGAC 3 cut(s) 453, 730, 900
FatI CATG 9 cut(s) 189, 415, 484, 636, 661, 902, 909, 1108, 1279
FauI CCCGC 1 cut(s) 1278
FauNDI CATATG 2 cut(s) 433, 847
Fnu4HI GCNGC 3 cut(s) 449, 452, 1113
FokI GGATG 2 cut(s) 605, 1169
FriOI GRGCYC 2 cut(s) 189, 1196
Fsp4HI GCNGC 3 cut(s) 449, 452, 1113
FspBI CTAG 1 cut(s) 141
GlaI GCGC 2 cut(s) 153, 222
GluI GCNGC 3 cut(s) 449, 452, 1113
GsuI CTGGAG 2 cut(s) 464, 641
HaeII RGCGCY 1 cut(s) 155
HaeIII GGCC 4 cut(s) 35, 201, 414, 706
HapII CCGG 4 cut(s) 457, 707, 1021, 1294
HhaI GCGC 2 cut(s) 154, 223
Hin1II CATG 9 cut(s) 193, 419, 488, 640, 665, 906, 913, 1112, 1283
Hin6I GCGC 2 cut(s) 152, 221
HinP1I GCGC 2 cut(s) 152, 221
HindIII AAGCTT 1 cut(s) 329
HinfI GANTC 3 cut(s) 1058, 1205, 1316
HpaII CCGG 4 cut(s) 457, 707, 1021, 1294
HphI GGTGA 3 cut(s) 22, 262, 472
Hpy166II GTNNAC 3 cut(s) 256, 566, 1130
Hpy188I TCNGA 7 cut(s) 244, 295, 594, 801, 1055, 1191, 1422
Hpy188III TCNNGA 2 cut(s) 910, 1256
Hpy8I GTNNAC 3 cut(s) 256, 566, 1130
HpyAV CCTTC 3 cut(s) 101, 316, 625
HpyCH4III ACNGT 5 cut(s) 73, 536, 985, 1168, 1225
HpyCH4IV ACGT 3 cut(s) 733, 921, 1342
HpyCH4V TGCA 8 cut(s) 100, 454, 578, 586, 1077, 1115, 1172, 1334
HpyF10VI GCNNNNNNNGC 2 cut(s) 227, 1040
HpyF3I CTNAG 6 cut(s) 243, 294, 408, 676, 1044, 1245
HpySE526I ACGT 3 cut(s) 733, 921, 1342
Hsp92II CATG 9 cut(s) 193, 419, 488, 640, 665, 906, 913, 1112, 1283
HspAI GCGC 2 cut(s) 152, 221
KroI GCCGGC 1 cut(s) 706
KroNI GCCGGC 1 cut(s) 708
Kzo9I GATC 6 cut(s) 174, 385, 477, 899, 1016, 1118
LguI GCTCTTC 2 cut(s) 177, 1201
LmnI GCTCC 3 cut(s) 445, 660, 1191
Lsp1109I GCAGC 3 cut(s) 438, 460, 1099
LweI GCATC 4 cut(s) 565, 1181, 1335, 1343
MaeI CTAG 1 cut(s) 141
MaeII ACGT 3 cut(s) 733, 921, 1342
MaeIII GTNAC 5 cut(s) 67, 734, 974, 1003, 1219
MalI GATC 6 cut(s) 176, 387, 479, 901, 1018, 1120
MboI GATC 6 cut(s) 174, 385, 477, 899, 1016, 1118
MfeI CAATTG 1 cut(s) 1143
MflI RGATCY 1 cut(s) 1016
MhlI GDGCHC 2 cut(s) 189, 1196
MluCI AATT 6 cut(s) 278, 580, 687, 785, 880, 1143
MlyI GAGTC 2 cut(s) 1199, 1310
MmeI TCCRAC 3 cut(s) 147, 518, 625
MnlI CCTC 8 cut(s) 138, 403, 430, 534, 1086, 1146, 1254, 1284
MroNI GCCGGC 1 cut(s) 706
MseI TTAA 5 cut(s) 131, 380, 861, 891, 1377
MslI CAYNNNNRTG 2 cut(s) 402, 1107
MspA1I CMGCKG 1 cut(s) 451
MspCI CTTAAG 1 cut(s) 890
MspI CCGG 4 cut(s) 457, 707, 1021, 1294
MspR9I CCNGG 2 cut(s) 1021, 1295
MunI CAATTG 1 cut(s) 1143
Mva1269I GAATGC 1 cut(s) 808
MwoI GCNNNNNNNGC 2 cut(s) 227, 1040
NaeI GCCGGC 1 cut(s) 708
NciI CCSGG 2 cut(s) 1021, 1295
NdeI CATATG 2 cut(s) 433, 847
NdeII GATC 6 cut(s) 174, 385, 477, 899, 1016, 1118
NgoMIV GCCGGC 1 cut(s) 706
NlaIII CATG 9 cut(s) 193, 419, 488, 640, 665, 906, 913, 1112, 1283
NlaIV GGNNCC 2 cut(s) 869, 1018
NmeAIII GCCGAG 1 cut(s) 61
NmuCI GTSAC 2 cut(s) 734, 974
NspI RCATGY 2 cut(s) 665, 1112
PaeI GCATGC 1 cut(s) 1112
PagI TCATGA 1 cut(s) 909
PciSI GCTCTTC 2 cut(s) 177, 1201
PctI GAATGC 1 cut(s) 808
PdiI GCCGGC 1 cut(s) 708
PfeI GAWTC 1 cut(s) 1058
PinAI ACCGGT 1 cut(s) 456
PkrI GCNGC 3 cut(s) 450, 453, 1114
PleI GAGTC 2 cut(s) 1199, 1310
PmaCI CACGTG 1 cut(s) 734
PmlI CACGTG 1 cut(s) 734
PpsI GAGTC 2 cut(s) 1199, 1310
Ppu21I YACGTR 2 cut(s) 734, 922
PshBI ATTAAT 2 cut(s) 380, 1377
Psp124BI GAGCTC 2 cut(s) 189, 1196
PspCI CACGTG 1 cut(s) 734
PspN4I GGNNCC 2 cut(s) 869, 1018
PspPI GGNCC 3 cut(s) 412, 704, 831
PstNI CAGNNNCTG 1 cut(s) 989
PsuI RGATCY 1 cut(s) 1016
PvuII CAGCTG 1 cut(s) 451
RseI CAYNNNNRTG 2 cut(s) 402, 1107
SacI GAGCTC 2 cut(s) 189, 1196
SapI GCTCTTC 2 cut(s) 177, 1201
SaqAI TTAA 5 cut(s) 131, 380, 861, 891, 1377
SatI GCNGC 3 cut(s) 449, 452, 1113
Sau3AI GATC 6 cut(s) 174, 385, 477, 899, 1016, 1118
Sau96I GGNCC 3 cut(s) 412, 704, 831
SchI GAGTC 2 cut(s) 1199, 1310
ScrFI CCNGG 2 cut(s) 1021, 1295
SduI GDGCHC 2 cut(s) 189, 1196
SfaNI GCATC 4 cut(s) 565, 1181, 1335, 1343
SfcI CTRYAG 3 cut(s) 112, 1224, 1263
SinI GGWCC 1 cut(s) 831
SmiMI CAYNNNNRTG 2 cut(s) 402, 1107
SmlI CTYRAG 3 cut(s) 332, 890, 1256
SmoI CTYRAG 3 cut(s) 332, 890, 1256
SphI GCATGC 1 cut(s) 1112
Sse9I AATT 6 cut(s) 278, 580, 687, 785, 880, 1143
SsiI CCGC 4 cut(s) 228, 506, 775, 1271
SspI AATATT 1 cut(s) 598
SspMI CTAG 1 cut(s) 141
SstI GAGCTC 2 cut(s) 189, 1196
StyD4I CCNGG 2 cut(s) 1019, 1293
StyI CCWWGG 1 cut(s) 1200
TaaI ACNGT 5 cut(s) 73, 536, 985, 1168, 1225
TaiI ACGT 3 cut(s) 736, 924, 1345
TaqI TCGA 1 cut(s) 384
TasI AATT 6 cut(s) 278, 580, 687, 785, 880, 1143
TfiI GAWTC 1 cut(s) 1058
Tru1I TTAA 5 cut(s) 131, 380, 861, 891, 1377
Tru9I TTAA 5 cut(s) 131, 380, 861, 891, 1377
TscAI CASTG 2 cut(s) 990, 1336
TseFI GTSAC 2 cut(s) 734, 974
TseI GCWGC 3 cut(s) 448, 451, 1112
Tsp45I GTSAC 2 cut(s) 734, 974
TspDTI ATGAA 7 cut(s) 420, 432, 607, 778, 898, 926, 1296
TspRI CASTG 2 cut(s) 990, 1336
Vha464I CTTAAG 1 cut(s) 890
VpaK11BI GGWCC 1 cut(s) 831
VspI ATTAAT 2 cut(s) 380, 1377
XapI RAATTY 2 cut(s) 278, 580
XceI RCATGY 2 cut(s) 665, 1112
XspI CTAG 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.