Rmu_sc0002105.1_g000005

May be involved in modulation of pathogen defense and leaf cell death

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002105.1
OG0006641
Physical Location & Seq
Reverse (-)
25235 .. 28496
3262 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1155 bp
atgccctcgccgccgcaatctaacttttcggcgggtgacccttccagcctgccatcagatgcaaaccagtcaacccgaagaacacgacccctgcaacgctgctcgatcaaggccggagtaccaatctggtgcgaaacaacctaccaagttggcctccttctgcctccctggaccgccgccgattcaacacgctctgcccagaaaacccaccacctacaaatctgccgaaaccagccacccacctgctggacctacgaagatcagagaaaaacgcagccgacgccacgaaaaccagaacaaacacggtcagagaggcctccaattcagaaacctcttgccgcaaaaccacgatcgacactgaggatccgctccgccccgccgccataccgctccacggacgcctccttgcctgaagaacgccgccgccagtcgaaacctagctggccactttggggttatgcgatagtgtgcattttcgtaaatgttcatggtctgaatatttatttttggctttccttcatccctgccattcttgtcatgctggtcggaacaaagctccagcatgttgtctcttccttagcacttgaaattgtagaacaaacagggccggctgttgggactgaagtaaagccacgtgacgatttgttttggtttgggaaaccagtaatactactgcggttgatacaattcatcatatttcagaatgcctttgagatggcaacatttctctggtccttgtggggacttaaggagagatcatgcttcatgaaaaaccacgtattgatagttattcggttggcttctggtgttcttgttcagttctggtgtagtcacagcacagtgcctctaaatgtcattgttacgcagatgggatcccggtgtcagaaagctctggttgctgagagtgtcagagaatcactccatagttggtgcaagagagtaaaggagaggtctaaacactcgcatgctgcaagatcagtttgttcacttgacacaacaattgatgagagggatgagataacagttgcatctggcactctatctcggagctcttccttggactcccaacatcaagtaactgcgaaagatatagagagattacaagagacagcaaattcatacaagggtacaataatttatcatactagaaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0016020 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mlo

Protein Analysis

384

Amino Acids

43.5

Weight (kDa)

9.75

Isoelectric Point (pI)

56.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mlo PF03094 146 - 332 6.7e-72 Mlo family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 251
Acc36I ACCTGC 1 cut(s) 251
AccB7I CCANNNNNTGG 1 cut(s) 246
AccBSI CCGCTC 2 cut(s) 369, 390
AclWI GGATC 4 cut(s) 358, 371, 867, 880
AcoI YGGCCR 1 cut(s) 443
AcsI RAATTY 1 cut(s) 1114
AcuI CTGAAG 2 cut(s) 432, 642
AcvI CACGTG 1 cut(s) 635
AcyI GRCGYC 2 cut(s) 281, 399
AfaI GTAC 2 cut(s) 120, 1129
AfiI CCNNNNNNNGG 4 cut(s) 246, 394, 452, 614
AflII CTTAAG 1 cut(s) 746
AgsI TTSAA 2 cut(s) 186, 587
AjnI CCWGG 1 cut(s) 167
AluBI AGCT 4 cut(s) 441, 556, 890, 1050
AluI AGCT 4 cut(s) 441, 556, 890, 1050
Alw21I GWGCWC 1 cut(s) 1052
Alw26I GTCTC 2 cut(s) 574, 1100
AlwI GGATC 4 cut(s) 358, 371, 867, 880
AoxI GGCC 5 cut(s) 111, 151, 314, 443, 605
ApeKI GCWGC 3 cut(s) 99, 274, 968
ApoI RAATTY 1 cut(s) 1114
AspS9I GGNCC 4 cut(s) 171, 249, 605, 732
AsuC2I CCSGG 1 cut(s) 877
AsuHPI GGTGA 1 cut(s) 47
AvaII GGWCC 3 cut(s) 171, 249, 732
BalI TGGCCA 1 cut(s) 445
BamHI GGATCC 2 cut(s) 363, 872
BanII GRGCYC 1 cut(s) 1052
BbrPI CACGTG 1 cut(s) 635
Bbv12I GWGCWC 1 cut(s) 1052
BbvI GCAGC 3 cut(s) 86, 286, 955
BccI CCATC 3 cut(s) 61, 709, 862
BciT130I CCWGG 1 cut(s) 169
BcnI CCSGG 1 cut(s) 877
BcoDI GTCTC 2 cut(s) 574, 1100
BfaI CTAG 2 cut(s) 438, 1146
BfrI CTTAAG 1 cut(s) 746
BfuAI ACCTGC 1 cut(s) 251
Bme1390I CCNGG 2 cut(s) 169, 877
Bme18I GGWCC 3 cut(s) 171, 249, 732
BmgT120I GGNCC 4 cut(s) 171, 249, 605, 732
BmiI GGNNCC 2 cut(s) 365, 874
BmrFI CCNGG 2 cut(s) 169, 877
BmsI GCATC 2 cut(s) 49, 1037
BplI GAGNNNNNCTC 2 cut(s) 903, 935
BpmI CTGGAG 1 cut(s) 542
Bpu10I CCTNAGC 1 cut(s) 577
BpuMI CCSGG 1 cut(s) 877
BsaAI YACGTR 2 cut(s) 635, 778
BsaHI GRCGYC 2 cut(s) 281, 399
BsaJI CCNNGG 3 cut(s) 167, 393, 1056
Bsc4I CCNNNNNNNGG 4 cut(s) 246, 394, 452, 614
Bse118I RCCGGY 1 cut(s) 607
Bse1I ACTGG 3 cut(s) 67, 427, 662
BseBI CCWGG 1 cut(s) 169
BseDI CCNNGG 3 cut(s) 167, 393, 1056
BseGI GGATG 2 cut(s) 519, 1018
BseLI CCNNNNNNNGG 4 cut(s) 246, 394, 452, 614
BseMII CTCAG 2 cut(s) 350, 891
BseNI ACTGG 3 cut(s) 67, 427, 662
BseXI GCAGC 3 cut(s) 86, 286, 955
Bsh1285I CGRYCG 1 cut(s) 353
BshFI GGCC 5 cut(s) 113, 153, 316, 445, 607
BsiEI CGRYCG 1 cut(s) 353
BsiHKAI GWGCWC 1 cut(s) 1052
BsiSI CCGG 3 cut(s) 114, 608, 877
BslFI GGGAC 2 cut(s) 631, 756
BslI CCNNNNNNNGG 4 cut(s) 246, 394, 452, 614
BsmAI GTCTC 2 cut(s) 574, 1100
BsmFI GGGAC 2 cut(s) 631, 756
BsmI GAATGC 1 cut(s) 709
BsnI GGCC 5 cut(s) 113, 153, 316, 445, 607
Bsp1286I GDGCHC 1 cut(s) 1052
Bsp143I GATC 7 cut(s) 105, 259, 350, 363, 755, 872, 974
BspANI GGCC 5 cut(s) 113, 153, 316, 445, 607
BspCNI CTCAG 2 cut(s) 351, 892
BspHI TCATGA 1 cut(s) 765
BspLI GGNNCC 2 cut(s) 365, 874
BspMI ACCTGC 1 cut(s) 251
BspPI GGATC 4 cut(s) 358, 371, 867, 880
BspQI GCTCTTC 1 cut(s) 1057
BspTI CTTAAG 1 cut(s) 746
BsrBI CCGCTC 2 cut(s) 369, 390
BsrFI RCCGGY 1 cut(s) 607
BsrI ACTGG 3 cut(s) 67, 427, 662
BssAI RCCGGY 1 cut(s) 607
BssECI CCNNGG 3 cut(s) 167, 393, 1056
BssMI GATC 7 cut(s) 105, 259, 350, 363, 755, 872, 974
BssNI GRCGYC 2 cut(s) 281, 399
BssT1I CCWWGG 1 cut(s) 1056
Bst2UI CCWGG 1 cut(s) 169
Bst4CI ACNGT 3 cut(s) 306, 841, 1024
Bst6I CTCTTC 2 cut(s) 577, 1057
BstACI GRCGYC 2 cut(s) 281, 399
BstAFI CTTAAG 1 cut(s) 746
BstBAI YACGTR 2 cut(s) 635, 778
BstC8I GCNNGC 4 cut(s) 50, 443, 609, 966
BstDEI CTNAG 3 cut(s) 359, 577, 900
BstDSI CCRYGG 1 cut(s) 393
BstEII GGTNACC 1 cut(s) 35
BstF5I GGATG 2 cut(s) 519, 1018
BstKTI GATC 7 cut(s) 108, 262, 353, 366, 758, 875, 977
BstMAI GTCTC 2 cut(s) 574, 1100
BstMBI GATC 7 cut(s) 105, 259, 350, 363, 755, 872, 974
BstMCI CGRYCG 1 cut(s) 353
BstMWI GCNNNNNNNGC 3 cut(s) 10, 280, 896
BstNI CCWGG 1 cut(s) 169
BstNSI RCATGY 2 cut(s) 566, 968
BstPI GGTNACC 1 cut(s) 35
BstSCI CCNGG 2 cut(s) 167, 875
BstV1I GCAGC 3 cut(s) 86, 286, 955
BstX2I RGATCY 2 cut(s) 363, 872
BstYI RGATCY 2 cut(s) 363, 872
BsuRI GGCC 5 cut(s) 113, 153, 316, 445, 607
BtgI CCRYGG 1 cut(s) 393
BtsCI GGATG 2 cut(s) 519, 1018
BtsIMutI CAGTG 2 cut(s) 356, 846
BveI ACCTGC 1 cut(s) 251
Cac8I GCNNGC 4 cut(s) 50, 443, 609, 966
CciI TCATGA 1 cut(s) 765
Cfr10I RCCGGY 1 cut(s) 607
Cfr13I GGNCC 4 cut(s) 171, 249, 605, 732
CseI GACGC 2 cut(s) 289, 407
Csp6I GTAC 2 cut(s) 119, 1128
CviAII CATG 6 cut(s) 488, 538, 563, 759, 766, 965
CviQI GTAC 2 cut(s) 119, 1128
DdeI CTNAG 3 cut(s) 359, 577, 900
DpnI GATC 7 cut(s) 107, 261, 352, 365, 757, 874, 976
DpnII GATC 7 cut(s) 105, 259, 350, 363, 755, 872, 974
EaeI YGGCCR 1 cut(s) 443
Eam1104I CTCTTC 2 cut(s) 577, 1057
EarI CTCTTC 2 cut(s) 577, 1057
EciI GGCGGA 1 cut(s) 361
Ecl136II GAGCTC 1 cut(s) 1050
Eco130I CCWWGG 1 cut(s) 1056
Eco147I AGGCCT 1 cut(s) 316
Eco24I GRGCYC 1 cut(s) 1052
Eco47I GGWCC 3 cut(s) 171, 249, 732
Eco53kI GAGCTC 1 cut(s) 1050
Eco57I CTGAAG 2 cut(s) 432, 642
Eco72I CACGTG 1 cut(s) 635
Eco91I GGTNACC 1 cut(s) 35
EcoICRI GAGCTC 1 cut(s) 1050
EcoO65I GGTNACC 1 cut(s) 35
EcoRII CCWGG 1 cut(s) 167
EcoT14I CCWWGG 1 cut(s) 1056
EcoT38I GRGCYC 1 cut(s) 1052
ErhI CCWWGG 1 cut(s) 1056
FaeI CATG 6 cut(s) 491, 541, 566, 762, 769, 968
FaqI GGGAC 2 cut(s) 631, 756
FatI CATG 6 cut(s) 487, 537, 562, 758, 765, 964
FauI CCCGC 2 cut(s) 25, 384
FokI GGATG 2 cut(s) 506, 1025
FriOI GRGCYC 1 cut(s) 1052
FspBI CTAG 2 cut(s) 438, 1146
GsuI CTGGAG 1 cut(s) 542
HaeIII GGCC 5 cut(s) 113, 153, 316, 445, 607
HapII CCGG 3 cut(s) 114, 608, 877
HgaI GACGC 2 cut(s) 289, 407
Hin1I GRCGYC 2 cut(s) 281, 399
Hin1II CATG 6 cut(s) 491, 541, 566, 762, 769, 968
HincII GTYRAC 1 cut(s) 72
HindII GTYRAC 1 cut(s) 72
HinfI GANTC 3 cut(s) 182, 914, 1061
HpaII CCGG 3 cut(s) 114, 608, 877
HphI GGTGA 1 cut(s) 47
Hpy166II GTNNAC 2 cut(s) 72, 986
Hpy188III TCNNGA 1 cut(s) 766
Hpy8I GTNNAC 2 cut(s) 72, 986
Hpy99I CGWCG 1 cut(s) 283
HpyAV CCTTC 3 cut(s) 51, 167, 526
HpyCH4III ACNGT 3 cut(s) 306, 841, 1024
HpyCH4IV ACGT 2 cut(s) 634, 777
HpyCH4V TGCA 6 cut(s) 62, 94, 471, 933, 971, 1028
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 280, 896
HpyF3I CTNAG 3 cut(s) 359, 577, 900
HpySE526I ACGT 2 cut(s) 634, 777
Hsp92I GRCGYC 2 cut(s) 281, 399
Hsp92II CATG 6 cut(s) 491, 541, 566, 762, 769, 968
KroI GCCGGC 1 cut(s) 607
KroNI GCCGGC 1 cut(s) 609
Kzo9I GATC 7 cut(s) 105, 259, 350, 363, 755, 872, 974
LguI GCTCTTC 1 cut(s) 1057
LmnI GCTCC 4 cut(s) 374, 395, 561, 1047
Lsp1109I GCAGC 3 cut(s) 86, 286, 955
LweI GCATC 2 cut(s) 49, 1037
MaeI CTAG 2 cut(s) 438, 1146
MaeII ACGT 2 cut(s) 634, 777
MaeIII GTNAC 5 cut(s) 35, 635, 830, 859, 1075
MalI GATC 7 cut(s) 107, 261, 352, 365, 757, 874, 976
MbiI CCGCTC 2 cut(s) 369, 390
MboI GATC 7 cut(s) 105, 259, 350, 363, 755, 872, 974
MboII GAAGA 5 cut(s) 90, 269, 425, 564, 1044
MfeI CAATTG 1 cut(s) 999
MflI RGATCY 2 cut(s) 363, 872
MhlI GDGCHC 1 cut(s) 1052
MlsI TGGCCA 1 cut(s) 445
MluCI AATT 6 cut(s) 321, 588, 686, 999, 1114, 1134
MluNI TGGCCA 1 cut(s) 445
MlyI GAGTC 1 cut(s) 1055
MmeI TCCRAC 1 cut(s) 526
Mox20I TGGCCA 1 cut(s) 445
MroNI GCCGGC 1 cut(s) 607
MscI TGGCCA 1 cut(s) 445
MseI TTAA 1 cut(s) 747
MslI CAYNNNNRTG 1 cut(s) 963
Msp20I TGGCCA 1 cut(s) 445
MspCI CTTAAG 1 cut(s) 746
MspI CCGG 3 cut(s) 114, 608, 877
MspR9I CCNGG 2 cut(s) 169, 877
MunI CAATTG 1 cut(s) 999
Mva1269I GAATGC 1 cut(s) 709
MvaI CCWGG 1 cut(s) 169
MwoI GCNNNNNNNGC 3 cut(s) 10, 280, 896
NaeI GCCGGC 1 cut(s) 609
NciI CCSGG 1 cut(s) 877
NdeII GATC 7 cut(s) 105, 259, 350, 363, 755, 872, 974
NgoMIV GCCGGC 1 cut(s) 607
NlaIII CATG 6 cut(s) 491, 541, 566, 762, 769, 968
NlaIV GGNNCC 2 cut(s) 365, 874
NmuCI GTSAC 3 cut(s) 35, 635, 830
NspI RCATGY 2 cut(s) 566, 968
PaeI GCATGC 1 cut(s) 968
PagI TCATGA 1 cut(s) 765
PaqCI CACCTGC 1 cut(s) 251
PceI AGGCCT 1 cut(s) 316
PciSI GCTCTTC 1 cut(s) 1057
PctI GAATGC 1 cut(s) 709
PdiI GCCGGC 1 cut(s) 609
PfeI GAWTC 2 cut(s) 182, 914
PflMI CCANNNNNTGG 1 cut(s) 246
Ple19I CGATCG 1 cut(s) 353
PleI GAGTC 1 cut(s) 1055
PmaCI CACGTG 1 cut(s) 635
PmlI CACGTG 1 cut(s) 635
PpsI GAGTC 1 cut(s) 1055
Ppu21I YACGTR 2 cut(s) 635, 778
Psp124BI GAGCTC 1 cut(s) 1052
Psp6I CCWGG 1 cut(s) 167
PspCI CACGTG 1 cut(s) 635
PspEI GGTNACC 1 cut(s) 35
PspGI CCWGG 1 cut(s) 167
PspN4I GGNNCC 2 cut(s) 365, 874
PspPI GGNCC 4 cut(s) 171, 249, 605, 732
PsuI RGATCY 2 cut(s) 363, 872
PvuI CGATCG 1 cut(s) 353
RsaI GTAC 2 cut(s) 120, 1129
RsaNI GTAC 2 cut(s) 119, 1128
RseI CAYNNNNRTG 1 cut(s) 963
SacI GAGCTC 1 cut(s) 1052
SapI GCTCTTC 1 cut(s) 1057
SaqAI TTAA 1 cut(s) 747
Sau3AI GATC 7 cut(s) 105, 259, 350, 363, 755, 872, 974
Sau96I GGNCC 4 cut(s) 171, 249, 605, 732
SchI GAGTC 1 cut(s) 1055
ScrFI CCNGG 2 cut(s) 169, 877
SduI GDGCHC 1 cut(s) 1052
SfaNI GCATC 2 cut(s) 49, 1037
SinI GGWCC 3 cut(s) 171, 249, 732
SmiMI CAYNNNNRTG 1 cut(s) 963
SmlI CTYRAG 1 cut(s) 746
SmoI CTYRAG 1 cut(s) 746
SphI GCATGC 1 cut(s) 968
Sse9I AATT 6 cut(s) 321, 588, 686, 999, 1114, 1134
SseBI AGGCCT 1 cut(s) 316
SspI AATATT 1 cut(s) 499
SspMI CTAG 2 cut(s) 438, 1146
SstI GAGCTC 1 cut(s) 1052
StuI AGGCCT 1 cut(s) 316
StyD4I CCNGG 2 cut(s) 167, 875
StyI CCWWGG 1 cut(s) 1056
TaaI ACNGT 3 cut(s) 306, 841, 1024
TaiI ACGT 2 cut(s) 637, 780
TaqI TCGA 3 cut(s) 104, 353, 431
TasI AATT 6 cut(s) 321, 588, 686, 999, 1114, 1134
TauI GCSGC 7 cut(s) 13, 16, 179, 341, 382, 423, 426
TfiI GAWTC 2 cut(s) 182, 914
Tru1I TTAA 1 cut(s) 747
Tru9I TTAA 1 cut(s) 747
TscAI CASTG 2 cut(s) 363, 846
TseFI GTSAC 3 cut(s) 35, 635, 830
TseI GCWGC 3 cut(s) 99, 274, 968
Tsp45I GTSAC 3 cut(s) 35, 635, 830
TspDTI ATGAA 6 cut(s) 476, 508, 679, 754, 782, 1107
TspGWI ACGGA 1 cut(s) 410
TspRI CASTG 2 cut(s) 363, 846
Van91I CCANNNNNTGG 1 cut(s) 246
Vha464I CTTAAG 1 cut(s) 746
VpaK11BI GGWCC 3 cut(s) 171, 249, 732
XapI RAATTY 1 cut(s) 1114
XceI RCATGY 2 cut(s) 566, 968
XcmI CCANNNNNNNNNTGG 1 cut(s) 243
XspI CTAG 2 cut(s) 438, 1146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.