Rmu_sc0002130.1_g000010

Cell division cycle-associated 7-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002130.1
OG0016254
Physical Location & Seq
Reverse (-)
55663 .. 59541
3879 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1251 bp
atggtggttcggagcggagccgacgacggagccgccgagaatggaagcgcgggggtttccgactacgagaaaatcagagagcaaaggatcaaagagaacctggccagaatgcagaacatgggcattttcgacctttcacgccagctccactccttcaaaccaaaccctcccaaacgcgctcgccggagtcctccttccgatcagcccaaaacccacaactcagttcccacaagacgctcctccaggttgcagaatgtggctcctgtaacctatgtggaaactgtaaggaaggactcagttgaaccaaaaagaagagtaaggaaggcttctcaaaatgcaaggaaccccaatggtgggaagagaaggacatcagacactgaatcagaaactgactcagaatcagactcagcctcagacttggactttgactcggactctgactctgaggttaaagttcgcatacagatatcaaattctgggtctccaccaaggcgctcttctagattgagagatgtggctccagtgagttatgtggaagctagtcctaaaaaggagaaagagctgtcagagagtgttgaaggagagtacttggtggatgactatggggaagatgggaagcgcattgatgatggggtcaaggatgaaacttgtcaccaatgcagatatggagagaatgtgattaaagccaaccaaaatcctgattgggtttgccctgtttgtcgggatatctgtaactgcagtctctgcttgagtaggaagacacaggaattaatgcatgatgatatcaaagaagaaatggagggatgcctcatggggaaagaggtgaacttcttaggtagtgtgcttgttcctacagaagacgtgcgcaagctagatgctgctactattgcttgtgatgttgatggtaagacaaagaaagaaccaaaaaggaacacgagcacgattagtgcgcatgttgctgcagaagacatggacaagctagatgctgctggtgatgttgttgattgtgagacaaatatagaatcaagaaggagcatgaggacaagtagtttgcatgttgctgcagaagacctgggcaccccagatgctgctggtgatgtggttcatggtgagacaaagcaaccaaggagcacaaggaggagtagtgggcatgttgctgtagaagacatgggccacctagatgctgctggtgacgttgatggtgaaaaaaagaaacaactaagaaggagcacaaggatgagggggaactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-4CXXC_R1

Protein Analysis

416

Amino Acids

46.0

Weight (kDa)

5.96

Isoelectric Point (pI)

59.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-4CXXC_R1 PF10497 216 - 258 2.7e-12 Zinc-finger domain of monoamine-oxidase A repressor R1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 866, 951
AccB1I GGYRCC 1 cut(s) 1076
AccBSI CCGCTC 1 cut(s) 15
AccII CGCG 2 cut(s) 50, 177
AciI CCGC 3 cut(s) 15, 33, 50
AclWI GGATC 1 cut(s) 95
AcoI YGGCCR 1 cut(s) 102
AcsI RAATTY 1 cut(s) 472
AfaI GTAC 1 cut(s) 587
AfiI CCNNNNNNNGG 2 cut(s) 353, 354
AgsI TTSAA 3 cut(s) 157, 302, 578
AjiI CACGTC 1 cut(s) 862
AjnI CCWGG 3 cut(s) 99, 242, 1071
AjuI GAANNNNNNNTTGG 2 cut(s) 481, 513
AluBI AGCT 5 cut(s) 145, 539, 562, 871, 979
AluI AGCT 5 cut(s) 145, 539, 562, 871, 979
Alw21I GWGCWC 3 cut(s) 941, 1133, 1232
Alw26I GTCTC 4 cut(s) 486, 746, 1004, 1106
AlwI GGATC 1 cut(s) 95
AlwNI CAGNNNCTG 4 cut(s) 377, 389, 744, 1088
AoxI GGCC 2 cut(s) 102, 1171
ApeKI GCWGC 6 cut(s) 878, 959, 986, 1061, 1088, 1184
ApoI RAATTY 1 cut(s) 472
ArsI GACNNNNNNTTYG 6 cut(s) 407, 439, 464, 496, 1033, 1065
AseI ATTAAT 1 cut(s) 770
AspLEI GCGC 6 cut(s) 50, 179, 495, 621, 867, 952
AspS9I GGNCC 1 cut(s) 1171
AsuHPI GGTGA 7 cut(s) 644, 835, 1004, 1106, 1121, 1202, 1214
BaeGI GKGCMC 1 cut(s) 1079
BalI TGGCCA 1 cut(s) 104
BanI GGYRCC 1 cut(s) 1076
BauI CACGAG 1 cut(s) 934
BbsI GAAGAC 5 cut(s) 764, 864, 972, 1074, 1170
Bbv12I GWGCWC 3 cut(s) 941, 1133, 1232
BbvI GCAGC 6 cut(s) 865, 946, 973, 1048, 1075, 1171
BccI CCATC 4 cut(s) 605, 623, 896, 1193
BciT130I CCWGG 3 cut(s) 101, 244, 1073
BcoDI GTCTC 4 cut(s) 486, 746, 1004, 1106
BfaI CTAG 5 cut(s) 501, 540, 872, 980, 1178
BfmI CTRYAG 5 cut(s) 736, 852, 960, 1062, 1158
BfoI RGCGCY 1 cut(s) 496
BisI GCNGC 7 cut(s) 33, 879, 960, 987, 1062, 1089, 1185
BlsI GCNGC 7 cut(s) 34, 880, 961, 988, 1063, 1090, 1186
BmcAI AGTACT 1 cut(s) 587
Bme1390I CCNGG 3 cut(s) 101, 244, 1073
BmgBI CACGTC 1 cut(s) 862
BmgT120I GGNCC 1 cut(s) 1171
BmiI GGNNCC 6 cut(s) 19, 31, 261, 344, 519, 1078
BmrFI CCNGG 3 cut(s) 101, 244, 1073
BmsI GCATC 5 cut(s) 794, 865, 973, 1075, 1171
BpiI GAAGAC 5 cut(s) 764, 864, 972, 1074, 1170
BpmI CTGGAG 2 cut(s) 226, 504
BpuEI CTTGAG 1 cut(s) 769
BsaI GGTCTC 1 cut(s) 486
BsaJI CCNNGG 3 cut(s) 488, 1072, 1124
BsaXI ACNNNNNCTCC 6 cut(s) 129, 159, 660, 690, 1129, 1159
Bsc4I CCNNNNNNNGG 2 cut(s) 353, 354
Bse1I ACTGG 1 cut(s) 521
BseBI CCWGG 3 cut(s) 101, 244, 1073
BseDI CCNNGG 3 cut(s) 488, 1072, 1124
BseGI GGATG 4 cut(s) 601, 646, 809, 1242
BseLI CCNNNNNNNGG 2 cut(s) 353, 354
BseMII CTCAG 6 cut(s) 234, 309, 408, 420, 426, 435
BseNI ACTGG 1 cut(s) 521
BseRI GAGGAG 2 cut(s) 229, 1153
BseSI GKGCMC 1 cut(s) 1079
BseXI GCAGC 6 cut(s) 865, 946, 973, 1048, 1075, 1171
Bsh1236I CGCG 2 cut(s) 50, 177
BshFI GGCC 2 cut(s) 104, 1173
BshNI GGYRCC 1 cut(s) 1076
BsiHKAI GWGCWC 3 cut(s) 941, 1133, 1232
BsiSI CCGG 1 cut(s) 184
BslI CCNNNNNNNGG 2 cut(s) 353, 354
BsmAI GTCTC 4 cut(s) 486, 746, 1004, 1106
BsmI GAATGC 1 cut(s) 114
BsnI GGCC 2 cut(s) 104, 1173
Bso31I GGTCTC 1 cut(s) 486
Bsp1286I GDGCHC 4 cut(s) 941, 1079, 1133, 1232
Bsp143I GATC 2 cut(s) 87, 199
BspACI CCGC 3 cut(s) 15, 33, 50
BspANI GGCC 2 cut(s) 104, 1173
BspCNI CTCAG 6 cut(s) 233, 308, 407, 419, 425, 436
BspFNI CGCG 2 cut(s) 50, 177
BspLI GGNNCC 6 cut(s) 19, 31, 261, 344, 519, 1078
BspMAI CTGCAG 3 cut(s) 740, 964, 1066
BspPI GGATC 1 cut(s) 95
BspQI GCTCTTC 1 cut(s) 502
BspT107I GGYRCC 1 cut(s) 1076
BspTNI GGTCTC 1 cut(s) 486
BsrBI CCGCTC 1 cut(s) 15
BsrI ACTGG 1 cut(s) 521
BssECI CCNNGG 3 cut(s) 488, 1072, 1124
BssMI GATC 2 cut(s) 87, 199
BssSI CACGAG 1 cut(s) 934
BssT1I CCWWGG 2 cut(s) 488, 1124
Bst2BI CACGAG 1 cut(s) 934
Bst2UI CCWGG 3 cut(s) 101, 244, 1073
Bst4CI ACNGT 1 cut(s) 283
Bst6I CTCTTC 3 cut(s) 307, 353, 502
BstAPI GCANNNNNTGC 1 cut(s) 744
BstC8I GCNNGC 3 cut(s) 143, 181, 869
BstDEI CTNAG 8 cut(s) 220, 295, 394, 406, 412, 444, 832, 1220
BstF5I GGATG 4 cut(s) 601, 646, 809, 1242
BstFNI CGCG 2 cut(s) 50, 177
BstH2I RGCGCY 1 cut(s) 496
BstHHI GCGC 6 cut(s) 50, 179, 495, 621, 867, 952
BstKTI GATC 2 cut(s) 90, 202
BstMAI GTCTC 4 cut(s) 486, 746, 1004, 1106
BstMBI GATC 2 cut(s) 87, 199
BstMWI GCNNNNNNNGC 3 cut(s) 744, 887, 956
BstNI CCWGG 3 cut(s) 101, 244, 1073
BstNSI RCATGY 3 cut(s) 956, 1058, 1154
BstSCI CCNGG 3 cut(s) 99, 242, 1071
BstSFI CTRYAG 5 cut(s) 736, 852, 960, 1062, 1158
BstSLI GKGCMC 1 cut(s) 1079
BstUI CGCG 2 cut(s) 50, 177
BstV1I GCAGC 6 cut(s) 865, 946, 973, 1048, 1075, 1171
BstV2I GAAGAC 5 cut(s) 764, 864, 972, 1074, 1170
BsuRI GGCC 2 cut(s) 104, 1173
BtrI CACGTC 1 cut(s) 862
BtsCI GGATG 4 cut(s) 601, 646, 809, 1242
BtsIMutI CAGTG 2 cut(s) 375, 528
Cac8I GCNNGC 3 cut(s) 143, 181, 869
CaiI CAGNNNCTG 4 cut(s) 377, 389, 744, 1088
CfoI GCGC 6 cut(s) 50, 179, 495, 621, 867, 952
Cfr13I GGNCC 1 cut(s) 1171
CseI GACGC 1 cut(s) 243
Csp6I GTAC 1 cut(s) 586
CviQI GTAC 1 cut(s) 586
DdeI CTNAG 8 cut(s) 220, 295, 394, 406, 412, 444, 832, 1220
DpnI GATC 2 cut(s) 89, 201
DpnII GATC 2 cut(s) 87, 199
EaeI YGGCCR 1 cut(s) 102
Eam1104I CTCTTC 3 cut(s) 307, 353, 502
EarI CTCTTC 3 cut(s) 307, 353, 502
Eco130I CCWWGG 2 cut(s) 488, 1124
Eco31I GGTCTC 1 cut(s) 486
Eco32I GATATC 3 cut(s) 468, 727, 784
EcoRII CCWGG 3 cut(s) 99, 242, 1071
EcoRV GATATC 3 cut(s) 468, 727, 784
EcoT14I CCWWGG 2 cut(s) 488, 1124
EcoT22I ATGCAT 1 cut(s) 777
ErhI CCWWGG 2 cut(s) 488, 1124
FalI AAGNNNNNCTT 4 cut(s) 310, 342, 481, 513
FauI CCCGC 1 cut(s) 43
Fnu4HI GCNGC 7 cut(s) 33, 879, 960, 987, 1062, 1089, 1185
FokI GGATG 3 cut(s) 608, 653, 816
Fsp4HI GCNGC 7 cut(s) 33, 879, 960, 987, 1062, 1089, 1185
FspAI RTGCGCAY 1 cut(s) 951
FspBI CTAG 5 cut(s) 501, 540, 872, 980, 1178
FspI TGCGCA 2 cut(s) 866, 951
GlaI GCGC 6 cut(s) 49, 178, 494, 620, 866, 951
GluI GCNGC 7 cut(s) 33, 879, 960, 987, 1062, 1089, 1185
GsuI CTGGAG 2 cut(s) 226, 504
HaeII RGCGCY 1 cut(s) 496
HaeIII GGCC 2 cut(s) 104, 1173
HapII CCGG 1 cut(s) 184
HgaI GACGC 1 cut(s) 243
HhaI GCGC 6 cut(s) 50, 179, 495, 621, 867, 952
Hin6I GCGC 6 cut(s) 48, 177, 493, 619, 865, 950
HinP1I GCGC 6 cut(s) 48, 177, 493, 619, 865, 950
HpaII CCGG 1 cut(s) 184
HphI GGTGA 7 cut(s) 644, 835, 1004, 1106, 1121, 1202, 1214
Hpy166II GTNNAC 1 cut(s) 826
Hpy188III TCNNGA 4 cut(s) 501, 698, 722, 1026
Hpy8I GTNNAC 1 cut(s) 826
Hpy99I CGWCG 2 cut(s) 26, 29
HpyAV CCTTC 8 cut(s) 163, 204, 283, 316, 357, 572, 1023, 1218
HpyCH4III ACNGT 1 cut(s) 283
HpyCH4IV ACGT 2 cut(s) 861, 1194
HpyCH4V TGCA 9 cut(s) 112, 250, 338, 660, 738, 775, 962, 1054, 1064
HpyF10VI GCNNNNNNNGC 3 cut(s) 744, 887, 956
HpyF3I CTNAG 8 cut(s) 220, 295, 394, 406, 412, 444, 832, 1220
HpySE526I ACGT 2 cut(s) 861, 1194
HspAI GCGC 6 cut(s) 48, 177, 493, 619, 865, 950
Kzo9I GATC 2 cut(s) 87, 199
LguI GCTCTTC 1 cut(s) 502
Lsp1109I GCAGC 6 cut(s) 865, 946, 973, 1048, 1075, 1171
LweI GCATC 5 cut(s) 794, 865, 973, 1075, 1171
MaeI CTAG 5 cut(s) 501, 540, 872, 980, 1178
MaeII ACGT 2 cut(s) 861, 1194
MaeIII GTNAC 4 cut(s) 265, 650, 731, 1190
MalI GATC 2 cut(s) 89, 201
MbiI CCGCTC 1 cut(s) 15
MboI GATC 2 cut(s) 87, 199
MhlI GDGCHC 4 cut(s) 941, 1079, 1133, 1232
MlsI TGGCCA 1 cut(s) 104
MluCI AATT 2 cut(s) 472, 767
MluNI TGGCCA 1 cut(s) 104
MlyI GAGTC 7 cut(s) 196, 287, 386, 398, 422, 428, 434
MmeI TCCRAC 1 cut(s) 84
Mox20I TGGCCA 1 cut(s) 104
Mph1103I ATGCAT 1 cut(s) 777
MscI TGGCCA 1 cut(s) 104
MseI TTAA 3 cut(s) 450, 681, 770
MslI CAYNNNNRTG 2 cut(s) 1179, 1235
Msp20I TGGCCA 1 cut(s) 104
MspI CCGG 1 cut(s) 184
MspR9I CCNGG 3 cut(s) 101, 244, 1073
Mva1269I GAATGC 1 cut(s) 114
MvaI CCWGG 3 cut(s) 101, 244, 1073
MvnI CGCG 2 cut(s) 50, 177
MwoI GCNNNNNNNGC 3 cut(s) 744, 887, 956
NdeII GATC 2 cut(s) 87, 199
NlaIV GGNNCC 6 cut(s) 19, 31, 261, 344, 519, 1078
NmeAIII GCCGAG 1 cut(s) 61
NmuCI GTSAC 2 cut(s) 650, 1190
NsbI TGCGCA 2 cut(s) 866, 951
NsiI ATGCAT 1 cut(s) 777
NspI RCATGY 3 cut(s) 956, 1058, 1154
PciSI GCTCTTC 1 cut(s) 502
PcsI WCGNNNNNNNCGW 1 cut(s) 33
PctI GAATGC 1 cut(s) 114
PfeI GAWTC 3 cut(s) 380, 398, 1022
PkrI GCNGC 7 cut(s) 34, 880, 961, 988, 1063, 1090, 1186
PleI GAGTC 7 cut(s) 195, 287, 386, 398, 422, 428, 434
PpsI GAGTC 7 cut(s) 195, 287, 386, 398, 422, 428, 434
PshBI ATTAAT 1 cut(s) 770
Psp6I CCWGG 3 cut(s) 99, 242, 1071
PspGI CCWGG 3 cut(s) 99, 242, 1071
PspN4I GGNNCC 6 cut(s) 19, 31, 261, 344, 519, 1078
PspPI GGNCC 1 cut(s) 1171
PstI CTGCAG 3 cut(s) 740, 964, 1066
PstNI CAGNNNCTG 4 cut(s) 377, 389, 744, 1088
RsaI GTAC 1 cut(s) 587
RsaNI GTAC 1 cut(s) 586
RseI CAYNNNNRTG 2 cut(s) 1179, 1235
SapI GCTCTTC 1 cut(s) 502
SaqAI TTAA 3 cut(s) 450, 681, 770
SatI GCNGC 7 cut(s) 33, 879, 960, 987, 1062, 1089, 1185
Sau3AI GATC 2 cut(s) 87, 199
Sau96I GGNCC 1 cut(s) 1171
ScaI AGTACT 1 cut(s) 587
SchI GAGTC 7 cut(s) 196, 287, 386, 398, 422, 428, 434
ScrFI CCNGG 3 cut(s) 101, 244, 1073
SduI GDGCHC 4 cut(s) 941, 1079, 1133, 1232
SfaNI GCATC 5 cut(s) 794, 865, 973, 1075, 1171
SfcI CTRYAG 5 cut(s) 736, 852, 960, 1062, 1158
SmiMI CAYNNNNRTG 2 cut(s) 1179, 1235
SmlI CTYRAG 1 cut(s) 748
SmoI CTYRAG 1 cut(s) 748
Sse9I AATT 2 cut(s) 472, 767
SsiI CCGC 3 cut(s) 15, 33, 50
SspMI CTAG 5 cut(s) 501, 540, 872, 980, 1178
StyD4I CCNGG 3 cut(s) 99, 242, 1071
StyI CCWWGG 2 cut(s) 488, 1124
TaaI ACNGT 1 cut(s) 283
TaiI ACGT 2 cut(s) 864, 1197
TaqI TCGA 1 cut(s) 129
TasI AATT 2 cut(s) 472, 767
TatI WGTACW 1 cut(s) 585
TauI GCSGC 1 cut(s) 35
TfiI GAWTC 3 cut(s) 380, 398, 1022
Tru1I TTAA 3 cut(s) 450, 681, 770
Tru9I TTAA 3 cut(s) 450, 681, 770
TscAI CASTG 2 cut(s) 382, 528
TseFI GTSAC 2 cut(s) 650, 1190
TseI GCWGC 6 cut(s) 878, 959, 986, 1061, 1088, 1184
Tsp45I GTSAC 2 cut(s) 650, 1190
TspDTI ATGAA 2 cut(s) 657, 1094
TspGWI ACGGA 1 cut(s) 42
TspRI CASTG 2 cut(s) 382, 528
VspI ATTAAT 1 cut(s) 770
XapI RAATTY 1 cut(s) 472
XbaI TCTAGA 1 cut(s) 500
XceI RCATGY 3 cut(s) 956, 1058, 1154
XcmI CCANNNNNNNNNTGG 1 cut(s) 662
XspI CTAG 5 cut(s) 501, 540, 872, 980, 1178
ZrmI AGTACT 1 cut(s) 587
Zsp2I ATGCAT 1 cut(s) 777
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.