Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002133.1

Orthogroup ID

OG0010215

Physical Location & Seq

Genomic Coordinates Forward (+)

16679 .. 18005

Gene Structure 1327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

atgttcctccgagcgatcgcacggccgctgatggccagggtgaagaagacgacggggatcgcagggctggacgtggtccccaacgcaagggaggtactgatcgagctctactccaaaaccctaaaggagatccaggccgtccccgaggacgaaggctaccgcaaagccgtccagagcttcactcggcagcgcctccaggtctgccgcgaagaggactgggaggccatcgagaagaggctcggctggggccagggatggattgtttataatggtttgcattgtttattgtgttgtattggagaatgggatccatggggtgttcctgatgattacgagtgtgaggtgatcgagaatgatgcttcagtccccaaacacgtgcccattcaccgacctggtcctcttcctgaggagttttataaaacgctgcagggtcttggttcagaccaaacaaagttggatgaggctaaggccacctcgattgactctgaatccaaggcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009853 GO:0009987 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

ETC_C1_NDUFA5

Protein Analysis

166

Amino Acids

18.8

Weight (kDa)

5.17

Isoelectric Point (pI)

49.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ETC_C1_NDUFA5	PF04716	22 - 84	8.8e-21	ETC complex I subunit conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52840
fragaria_vesca	FvH4_7g30480
malus_domestica	MD01G1210300.v1.1 MD07G1280400.v1.1
prunus_persica	Prupe.2G302600_v2.0.a1
pyrus_communis	pycom01g22080 pycom07g25500
rosa_chinensis	RchiOBHm_Chr1g0378851
rosa_laevigata	RLG00000026414
rosa_multiflora	Rmu_sc0000556.1_g000040 Rmu_sc0002133.1_g000003 Rmu_sc0013199.1_g000013
rosa_roxburghii	Rroxscaffold_4G00280320
rosa_rugosa	Rorug01G0410500
rosa_samantha	Rh1AG432800 Rh1BG391000 Rh1CG403700 Rh1DG422100
rosa_wichuraiana	Rw0G009120 Rw1G027090 Rw1G037840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	267, 417
AccII	CGCG	1 cut(s)	207
AciI	CCGC	3 cut(s)	26, 160, 205
AclWI	GGATC	4 cut(s)	65, 124, 302, 315
AcoI	YGGCCR	2 cut(s)	23, 33
AcuI	CTGAAG	1 cut(s)	345
AcvI	CACGTG	1 cut(s)	376
AfaI	GTAC	1 cut(s)	96
AfiI	CCNNNNNNNGG	2 cut(s)	87, 211
AflIII	ACRYGT	1 cut(s)	373
AjiI	CACGTC	1 cut(s)	73
AjnI	CCWGG	5 cut(s)	35, 132, 195, 249, 391
AluBI	AGCT	2 cut(s)	106, 177
AluI	AGCT	2 cut(s)	106, 177
Alw21I	GWGCWC	1 cut(s)	108
AlwI	GGATC	4 cut(s)	65, 124, 302, 315
Ama87I	CYCGRG	1 cut(s)	143
AoxI	GGCC	6 cut(s)	23, 33, 135, 222, 247, 468
ApeKI	GCWGC	2 cut(s)	187, 424
AsiSI	GCGATCGC	1 cut(s)	18
AspLEI	GCGC	1 cut(s)	192
AspS9I	GGNCC	3 cut(s)	76, 247, 395
AsuHPI	GGTGA	3 cut(s)	52, 355, 377
AvaI	CYCGRG	1 cut(s)	143
AvaII	GGWCC	2 cut(s)	76, 395
AxyI	CCTNAGG	1 cut(s)	405
BaeGI	GKGCMC	1 cut(s)	381
BalI	TGGCCA	1 cut(s)	35
BamHI	GGATCC	1 cut(s)	307
BanII	GRGCYC	1 cut(s)	108
BbrPI	CACGTG	1 cut(s)	376
BbsI	GAAGAC	1 cut(s)	53
Bbv12I	GWGCWC	1 cut(s)	108
BbvI	GCAGC	2 cut(s)	199, 411
BccI	CCATC	3 cut(s)	25, 233, 249
BceAI	ACGGC	3 cut(s)	38, 122, 152
BcgI	CGANNNNNNTGC	2 cut(s)	338, 372
BciT130I	CCWGG	5 cut(s)	37, 134, 197, 251, 393
BfmI	CTRYAG	1 cut(s)	425
BfoI	RGCGCY	1 cut(s)	193
BisI	GCNGC	4 cut(s)	26, 188, 205, 425
BlsI	GCNGC	4 cut(s)	27, 189, 206, 426
Bme1390I	CCNGG	5 cut(s)	37, 134, 197, 251, 393
Bme18I	GGWCC	2 cut(s)	76, 395
BmeT110I	CYCGRG	1 cut(s)	143
BmgBI	CACGTC	1 cut(s)	73
BmgT120I	GGNCC	3 cut(s)	76, 247, 395
BmiI	GGNNCC	3 cut(s)	78, 248, 309
BmrFI	CCNGG	5 cut(s)	37, 134, 197, 251, 393
BmrI	ACTGGG	1 cut(s)	226
BmsI	GCATC	1 cut(s)	346
BmuI	ACTGGG	1 cut(s)	226
BpiI	GAAGAC	1 cut(s)	53
BplI	GAGNNNNNCTC	4 cut(s)	95, 127, 166, 198
BpmI	CTGGAG	1 cut(s)	179
Bpu10I	CCTNAGC	1 cut(s)	465
BsaAI	YACGTR	1 cut(s)	376
BsaJI	CCNNGG	5 cut(s)	36, 144, 250, 311, 492
Bsc4I	CCNNNNNNNGG	2 cut(s)	87, 211
Bse1I	ACTGG	1 cut(s)	221
Bse21I	CCTNAGG	1 cut(s)	405
BseBI	CCWGG	5 cut(s)	37, 134, 197, 251, 393
BseDI	CCNNGG	5 cut(s)	36, 144, 250, 311, 492
BseGI	GGATG	2 cut(s)	260, 463
BseLI	CCNNNNNNNGG	2 cut(s)	87, 211
BseMII	CTCAG	1 cut(s)	396
BseNI	ACTGG	1 cut(s)	221
BseRI	GAGGAG	1 cut(s)	422
BseSI	GKGCMC	1 cut(s)	381
BseX3I	CGGCCG	1 cut(s)	23
BseXI	GCAGC	2 cut(s)	199, 411
BseYI	CCCAGC	1 cut(s)	243
Bsh1236I	CGCG	1 cut(s)	207
Bsh1285I	CGRYCG	2 cut(s)	18, 26
BshFI	GGCC	6 cut(s)	25, 35, 137, 224, 249, 470
BsiEI	CGRYCG	2 cut(s)	18, 26
BsiHKAI	GWGCWC	1 cut(s)	108
BsiHKCI	CYCGRG	1 cut(s)	143
BslFI	GGGAC	3 cut(s)	62, 125, 350
BslI	CCNNNNNNNGG	2 cut(s)	87, 211
BsmFI	GGGAC	3 cut(s)	62, 125, 350
BsnI	GGCC	6 cut(s)	25, 35, 137, 224, 249, 470
BsoBI	CYCGRG	1 cut(s)	143
Bsp1286I	GDGCHC	2 cut(s)	108, 381
Bsp143I	GATC	6 cut(s)	15, 57, 99, 129, 307, 345
Bsp19I	CCATGG	1 cut(s)	311
BspACI	CCGC	3 cut(s)	26, 160, 205
BspANI	GGCC	6 cut(s)	25, 35, 137, 224, 249, 470
BspCNI	CTCAG	1 cut(s)	397
BspFNI	CGCG	1 cut(s)	207
BspLI	GGNNCC	3 cut(s)	78, 248, 309
BspMAI	CTGCAG	1 cut(s)	429
BspPI	GGATC	4 cut(s)	65, 124, 302, 315
BsrI	ACTGG	1 cut(s)	221
BssECI	CCNNGG	5 cut(s)	36, 144, 250, 311, 492
BssMI	GATC	6 cut(s)	15, 57, 99, 129, 307, 345
BssT1I	CCWWGG	2 cut(s)	311, 492
Bst2UI	CCWGG	5 cut(s)	37, 134, 197, 251, 393
Bst6I	CTCTTC	3 cut(s)	204, 227, 405
BstBAI	YACGTR	1 cut(s)	376
BstDEI	CTNAG	2 cut(s)	405, 465
BstDSI	CCRYGG	1 cut(s)	311
BstF5I	GGATG	2 cut(s)	260, 463
BstFNI	CGCG	1 cut(s)	207
BstH2I	RGCGCY	1 cut(s)	193
BstHHI	GCGC	1 cut(s)	192
BstKTI	GATC	6 cut(s)	18, 60, 102, 132, 310, 348
BstMBI	GATC	6 cut(s)	15, 57, 99, 129, 307, 345
BstMCI	CGRYCG	2 cut(s)	18, 26
BstNI	CCWGG	5 cut(s)	37, 134, 197, 251, 393
BstSCI	CCNGG	5 cut(s)	35, 132, 195, 249, 391
BstSFI	CTRYAG	1 cut(s)	425
BstSLI	GKGCMC	1 cut(s)	381
BstUI	CGCG	1 cut(s)	207
BstV1I	GCAGC	2 cut(s)	199, 411
BstV2I	GAAGAC	1 cut(s)	53
BstX2I	RGATCY	2 cut(s)	129, 307
BstYI	RGATCY	2 cut(s)	129, 307
BstZI	CGGCCG	1 cut(s)	23
Bsu36I	CCTNAGG	1 cut(s)	405
BsuRI	GGCC	6 cut(s)	25, 35, 137, 224, 249, 470
BtgI	CCRYGG	1 cut(s)	311
BtrI	CACGTC	1 cut(s)	73
BtsCI	GGATG	2 cut(s)	260, 463
CfoI	GCGC	1 cut(s)	192
Cfr13I	GGNCC	3 cut(s)	76, 247, 395
CsiI	ACCWGGT	1 cut(s)	391
Csp6I	GTAC	1 cut(s)	95
CspCI	CAANNNNNGTGG	2 cut(s)	460, 495
CviAII	CATG	1 cut(s)	312
CviQI	GTAC	1 cut(s)	95
DdeI	CTNAG	2 cut(s)	405, 465
DpnI	GATC	6 cut(s)	17, 59, 101, 131, 309, 347
DpnII	GATC	6 cut(s)	15, 57, 99, 129, 307, 345
EaeI	YGGCCR	2 cut(s)	23, 33
EagI	CGGCCG	1 cut(s)	23
Eam1104I	CTCTTC	3 cut(s)	204, 227, 405
EarI	CTCTTC	3 cut(s)	204, 227, 405
Ecl136II	GAGCTC	1 cut(s)	106
EclXI	CGGCCG	1 cut(s)	23
Eco130I	CCWWGG	2 cut(s)	311, 492
Eco24I	GRGCYC	1 cut(s)	108
Eco47I	GGWCC	2 cut(s)	76, 395
Eco52I	CGGCCG	1 cut(s)	23
Eco53kI	GAGCTC	1 cut(s)	106
Eco57I	CTGAAG	1 cut(s)	345
Eco72I	CACGTG	1 cut(s)	376
Eco81I	CCTNAGG	1 cut(s)	405
Eco88I	CYCGRG	1 cut(s)	143
EcoICRI	GAGCTC	1 cut(s)	106
EcoRII	CCWGG	5 cut(s)	35, 132, 195, 249, 391
EcoT14I	CCWWGG	2 cut(s)	311, 492
EcoT38I	GRGCYC	1 cut(s)	108
ErhI	CCWWGG	2 cut(s)	311, 492
FaeI	CATG	1 cut(s)	315
FaiI	YATR	4 cut(s)	267, 313, 417, 499
FaqI	GGGAC	3 cut(s)	62, 125, 350
FatI	CATG	1 cut(s)	311
Fnu4HI	GCNGC	4 cut(s)	26, 188, 205, 425
FokI	GGATG	2 cut(s)	267, 470
FriOI	GRGCYC	1 cut(s)	108
Fsp4HI	GCNGC	4 cut(s)	26, 188, 205, 425
GlaI	GCGC	1 cut(s)	191
GluI	GCNGC	4 cut(s)	26, 188, 205, 425
GsaI	CCCAGC	1 cut(s)	247
GsuI	CTGGAG	1 cut(s)	179
HaeII	RGCGCY	1 cut(s)	193
HaeIII	GGCC	6 cut(s)	25, 35, 137, 224, 249, 470
HhaI	GCGC	1 cut(s)	192
Hin1II	CATG	1 cut(s)	315
Hin6I	GCGC	1 cut(s)	190
HinP1I	GCGC	1 cut(s)	190
HinfI	GANTC	2 cut(s)	482, 488
HphI	GGTGA	3 cut(s)	52, 355, 377
Hpy188I	TCNGA	3 cut(s)	11, 442, 487
Hpy188III	TCNNGA	5 cut(s)	172, 229, 323, 349, 404
Hpy99I	CGWCG	1 cut(s)	55
HpyAV	CCTTC	1 cut(s)	146
HpyCH4IV	ACGT	2 cut(s)	72, 375
HpyCH4V	TGCA	2 cut(s)	277, 427
HpyF3I	CTNAG	2 cut(s)	405, 465
HpySE526I	ACGT	2 cut(s)	72, 375
Hsp92II	CATG	1 cut(s)	315
HspAI	GCGC	1 cut(s)	190
Kzo9I	GATC	6 cut(s)	15, 57, 99, 129, 307, 345
Lsp1109I	GCAGC	2 cut(s)	199, 411
LweI	GCATC	1 cut(s)	346
MabI	ACCWGGT	1 cut(s)	391
MaeII	ACGT	2 cut(s)	72, 375
MalI	GATC	6 cut(s)	17, 59, 101, 131, 309, 347
MboI	GATC	6 cut(s)	15, 57, 99, 129, 307, 345
MboII	GAAGA	5 cut(s)	55, 58, 221, 244, 392
MflI	RGATCY	2 cut(s)	129, 307
MhlI	GDGCHC	2 cut(s)	108, 381
MlsI	TGGCCA	1 cut(s)	35
MluNI	TGGCCA	1 cut(s)	35
MlyI	GAGTC	1 cut(s)	476
MmeI	TCCRAC	1 cut(s)	435
Mox20I	TGGCCA	1 cut(s)	35
MscI	TGGCCA	1 cut(s)	35
Msp20I	TGGCCA	1 cut(s)	35
MspA1I	CMGCKG	1 cut(s)	28
MspR9I	CCNGG	5 cut(s)	37, 134, 197, 251, 393
MvaI	CCWGG	5 cut(s)	37, 134, 197, 251, 393
MvnI	CGCG	1 cut(s)	207
NcoI	CCATGG	1 cut(s)	311
NdeII	GATC	6 cut(s)	15, 57, 99, 129, 307, 345
NlaIII	CATG	1 cut(s)	315
NlaIV	GGNNCC	3 cut(s)	78, 248, 309
NmeAIII	GCCGAG	2 cut(s)	163, 219
PfeI	GAWTC	1 cut(s)	488
PflFI	GACNNNGTC	2 cut(s)	74, 393
PkrI	GCNGC	4 cut(s)	27, 189, 206, 426
Ple19I	CGATCG	1 cut(s)	18
PleI	GAGTC	1 cut(s)	476
PmaCI	CACGTG	1 cut(s)	376
PmlI	CACGTG	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	476
Ppu21I	YACGTR	1 cut(s)	376
PsiI	TTATAA	2 cut(s)	267, 417
Psp124BI	GAGCTC	1 cut(s)	108
Psp6I	CCWGG	5 cut(s)	35, 132, 195, 249, 391
PspCI	CACGTG	1 cut(s)	376
PspFI	CCCAGC	1 cut(s)	243
PspGI	CCWGG	5 cut(s)	35, 132, 195, 249, 391
PspN4I	GGNNCC	3 cut(s)	78, 248, 309
PspPI	GGNCC	3 cut(s)	76, 247, 395
PstI	CTGCAG	1 cut(s)	429
PsuI	RGATCY	2 cut(s)	129, 307
PsyI	GACNNNGTC	2 cut(s)	74, 393
PvuI	CGATCG	1 cut(s)	18
RgaI	GCGATCGC	1 cut(s)	18
RsaI	GTAC	1 cut(s)	96
RsaNI	GTAC	1 cut(s)	95
SacI	GAGCTC	1 cut(s)	108
SatI	GCNGC	4 cut(s)	26, 188, 205, 425
Sau3AI	GATC	6 cut(s)	15, 57, 99, 129, 307, 345
Sau96I	GGNCC	3 cut(s)	76, 247, 395
SchI	GAGTC	1 cut(s)	476
ScrFI	CCNGG	5 cut(s)	37, 134, 197, 251, 393
SduI	GDGCHC	2 cut(s)	108, 381
SetI	ASST	9 cut(s)	75, 96, 108, 179, 201, 345, 378, 394, 476
SexAI	ACCWGGT	1 cut(s)	391
SfaAI	GCGATCGC	1 cut(s)	18
SfaNI	GCATC	1 cut(s)	346
SfcI	CTRYAG	1 cut(s)	425
SgfI	GCGATCGC	1 cut(s)	18
SinI	GGWCC	2 cut(s)	76, 395
SsiI	CCGC	3 cut(s)	26, 160, 205
SstI	GAGCTC	1 cut(s)	108
StyD4I	CCNGG	5 cut(s)	35, 132, 195, 249, 391
StyI	CCWWGG	2 cut(s)	311, 492
TaiI	ACGT	2 cut(s)	75, 378
TaqI	TCGA	4 cut(s)	102, 228, 348, 476
TauI	GCSGC	2 cut(s)	28, 207
TfiI	GAWTC	1 cut(s)	488
TseI	GCWGC	2 cut(s)	187, 424
Tth111I	GACNNNGTC	2 cut(s)	74, 393
VpaK11BI	GGWCC	2 cut(s)	76, 395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.