Rmu_sc0002183.1_g000014
RLK Family

cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002183.1
OG0018676
Physical Location & Seq
Reverse (-)
61815 .. 63498
1684 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1245 bp
atgagaaacaaagttgaaaaagaagagctgaactgtgaaggtcggttgtggctcattagatatatcgatggatcattccctcgtccaccacaacacattattacagaagaaggtggggttatgtctgatatgacaaaggagtacatggactgggtgcaaaatgattctgccgttatgtctatacttgcagctactctgtctaatgatgttctttcctttattgttggaagtaagacttctagggaaatttggtgtcgacttaaggagaaatatgctagtgcatcggcatataacataatgacattgaagatctccttatacaacatccaaaaaggctcagactctattgacatgtatttacttcgagttaagttactatgtgatcagcttgctattgtaggaatttatctggcagatgaggatataatatatagtctcaatgagattaatcaaactgtgatgtccatgtctttgtcctccaagactgctatggctgcatttggtgatacttccagagctcaagctactaatgctgcatgtgtctctagtgatatgatgtttacaaggtatagctctgatgataactcaacttctgattccactgtggctgaaagtcagagtgttgatcaactgattacagaagattgtgcttatgaagacattcaaattcctcaagattcgaagaagaaacaagttggagaagactcttattcagataaagaggagcaattgaactctcaagaacatgtttttctggatgagaaagttgcttctaataaagataagtttctacaagaaaagaaatctacttcttttgttgtaatagaatctacttctgattctgtttcaggttatttttgttcgatccctgagctttcctttatgagtcctcttatgagttctcttggcaacaaaagtgataatgcaaccaactcaagaacagaagctcaggcacattttatgacatctgagcaggttcaagagtacaatcaaggaaagcaaacatttgttgcaaagtcaacaaggagtgaaaagcaaaggaatgatgaattgccattttacaaatgcaaaaatatcgaatctggtttatctcttgataatgctttcaggagggaatatcaccaagattttcatgatcaaggtgtaagaggtgaacaacacgatgattatgattacaagcctcaatctctacttggagcttatctgatacaaggctcttggcagctgttatccactccttcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve

Protein Analysis

414

Amino Acids

46.77

Weight (kDa)

4.75

Isoelectric Point (pI)

55.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 42 - 144 2.6e-11 gag-polypeptide of LTR copia-type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 964
AccI GTMKAC 1 cut(s) 256
AclWI GGATC 2 cut(s) 79, 859
AcsI RAATTY 3 cut(s) 246, 402, 666
AfaI GTAC 2 cut(s) 143, 986
AflII CTTAAG 1 cut(s) 260
AflIII ACRYGT 2 cut(s) 351, 745
AgsI TTSAA 5 cut(s) 17, 307, 665, 733, 980
Alw21I GWGCWC 1 cut(s) 520
Alw26I GTCTC 2 cut(s) 440, 547
AlwI GGATC 2 cut(s) 79, 859
ApeKI GCWGC 4 cut(s) 188, 494, 533, 1222
ApoI RAATTY 3 cut(s) 246, 402, 666
AseI ATTAAT 1 cut(s) 447
Asp700I GAANNNNTTC 1 cut(s) 660
AsuHPI GGTGA 3 cut(s) 515, 1112, 1163
AsuII TTCGAA 1 cut(s) 680
BanII GRGCYC 1 cut(s) 520
BbsI GAAGAC 2 cut(s) 663, 708
Bbv12I GWGCWC 1 cut(s) 520
BbvI GCAGC 4 cut(s) 200, 481, 520, 1234
BccI CCATC 1 cut(s) 62
BceAI ACGGC 1 cut(s) 155
BcgI CGANNNNNNTGC 2 cut(s) 1057, 1091
BclI TGATCA 3 cut(s) 382, 625, 1135
BcoDI GTCTC 2 cut(s) 440, 547
BfaI CTAG 3 cut(s) 240, 276, 546
BfrI CTTAAG 1 cut(s) 260
BfuAI ACCTGC 1 cut(s) 964
BglII AGATCT 1 cut(s) 309
BisI GCNGC 4 cut(s) 189, 495, 534, 1223
BlsI GCNGC 4 cut(s) 190, 496, 535, 1224
BmrI ACTGGG 1 cut(s) 160
BmsI GCATC 1 cut(s) 290
BmuI ACTGGG 1 cut(s) 160
BpiI GAAGAC 2 cut(s) 663, 708
Bpu10I CCTNAGC 2 cut(s) 870, 948
Bpu14I TTCGAA 1 cut(s) 680
BpuEI CTTGAG 4 cut(s) 504, 657, 723, 919
Bsa29I ATCGAT 1 cut(s) 66
Bse1I ACTGG 1 cut(s) 155
BseCI ATCGAT 1 cut(s) 66
BseGI GGATG 2 cut(s) 324, 763
BseMII CTCAG 4 cut(s) 351, 861, 960, 962
BseNI ACTGG 1 cut(s) 155
BseRI GAGGAG 1 cut(s) 737
BseXI GCAGC 4 cut(s) 200, 481, 520, 1234
BshVI ATCGAT 1 cut(s) 66
BsiHKAI GWGCWC 1 cut(s) 520
BsmAI GTCTC 2 cut(s) 440, 547
Bsp119I TTCGAA 1 cut(s) 680
Bsp1286I GDGCHC 1 cut(s) 520
Bsp143I GATC 6 cut(s) 71, 309, 382, 625, 864, 1135
BspCNI CTCAG 4 cut(s) 350, 862, 961, 961
BspDI ATCGAT 1 cut(s) 66
BspHI TCATGA 1 cut(s) 1132
BspMI ACCTGC 1 cut(s) 964
BspPI GGATC 2 cut(s) 79, 859
BspQI GCTCTTC 1 cut(s) 18
BspT104I TTCGAA 1 cut(s) 680
BspTI CTTAAG 1 cut(s) 260
BsrI ACTGG 1 cut(s) 155
BssMI GATC 6 cut(s) 71, 309, 382, 625, 864, 1135
Bst4CI ACNGT 3 cut(s) 35, 457, 604
Bst6I CTCTTC 1 cut(s) 18
BstAFI CTTAAG 1 cut(s) 260
BstBI TTCGAA 1 cut(s) 680
BstC8I GCNNGC 1 cut(s) 390
BstDEI CTNAG 4 cut(s) 337, 870, 948, 969
BstF5I GGATG 2 cut(s) 324, 763
BstKTI GATC 6 cut(s) 74, 312, 385, 628, 867, 1138
BstMAI GTCTC 2 cut(s) 440, 547
BstMBI GATC 6 cut(s) 71, 309, 382, 625, 864, 1135
BstMWI GCNNNNNNNGC 2 cut(s) 494, 530
BstNSI RCATGY 3 cut(s) 355, 540, 749
BstV1I GCAGC 4 cut(s) 200, 481, 520, 1234
BstV2I GAAGAC 2 cut(s) 663, 708
BstX2I RGATCY 1 cut(s) 309
BstYI RGATCY 1 cut(s) 309
Bsu15I ATCGAT 1 cut(s) 66
BsuTUI ATCGAT 1 cut(s) 66
BtsCI GGATG 2 cut(s) 324, 763
BtsIMutI CAGTG 1 cut(s) 600
BveI ACCTGC 1 cut(s) 964
Cac8I GCNNGC 1 cut(s) 390
CciI TCATGA 1 cut(s) 1132
ClaI ATCGAT 1 cut(s) 66
Csp6I GTAC 2 cut(s) 142, 985
CviAII CATG 6 cut(s) 145, 352, 466, 537, 746, 1133
CviQI GTAC 2 cut(s) 142, 985
DdeI CTNAG 4 cut(s) 337, 870, 948, 969
DpnI GATC 6 cut(s) 73, 311, 384, 627, 866, 1137
DpnII GATC 6 cut(s) 71, 309, 382, 625, 864, 1135
Eam1104I CTCTTC 1 cut(s) 18
EarI CTCTTC 1 cut(s) 18
Ecl136II GAGCTC 1 cut(s) 518
Eco24I GRGCYC 1 cut(s) 520
Eco53kI GAGCTC 1 cut(s) 518
EcoICRI GAGCTC 1 cut(s) 518
EcoT38I GRGCYC 1 cut(s) 520
FaeI CATG 6 cut(s) 148, 355, 469, 540, 749, 1136
FalI AAGNNNNNCTT 4 cut(s) 220, 252, 299, 331
FatI CATG 6 cut(s) 144, 351, 465, 536, 745, 1132
FbaI TGATCA 3 cut(s) 382, 625, 1135
FblI GTMKAC 1 cut(s) 256
Fnu4HI GCNGC 4 cut(s) 189, 495, 534, 1223
FokI GGATG 2 cut(s) 311, 770
FriOI GRGCYC 1 cut(s) 520
Fsp4HI GCNGC 4 cut(s) 189, 495, 534, 1223
FspBI CTAG 3 cut(s) 240, 276, 546
GluI GCNGC 4 cut(s) 189, 495, 534, 1223
Hin1II CATG 6 cut(s) 148, 355, 469, 540, 749, 1136
HincII GTYRAC 2 cut(s) 257, 1020
HindII GTYRAC 2 cut(s) 257, 1020
HinfI GANTC 9 cut(s) 164, 341, 596, 677, 704, 827, 839, 886, 1079
HphI GGTGA 3 cut(s) 515, 1112, 1163
Hpy166II GTNNAC 5 cut(s) 86, 257, 561, 1020, 1154
Hpy188I TCNGA 9 cut(s) 127, 340, 577, 595, 618, 715, 838, 970, 1206
Hpy188III TCNNGA 9 cut(s) 513, 674, 740, 755, 936, 980, 1094, 1108, 1133
Hpy8I GTNNAC 5 cut(s) 86, 257, 561, 1020, 1154
HpyAV CCTTC 2 cut(s) 32, 104
HpyCH4III ACNGT 3 cut(s) 35, 457, 604
HpyCH4V TGCA 8 cut(s) 157, 188, 281, 497, 536, 926, 1013, 1068
HpyF10VI GCNNNNNNNGC 2 cut(s) 494, 530
HpyF3I CTNAG 4 cut(s) 337, 870, 948, 969
Hsp92II CATG 6 cut(s) 148, 355, 469, 540, 749, 1136
Ksp22I TGATCA 3 cut(s) 382, 625, 1135
Kzo9I GATC 6 cut(s) 71, 309, 382, 625, 864, 1135
LguI GCTCTTC 1 cut(s) 18
LmnI GCTCC 2 cut(s) 724, 1196
Lsp1109I GCAGC 4 cut(s) 200, 481, 520, 1234
LweI GCATC 1 cut(s) 290
MaeI CTAG 3 cut(s) 240, 276, 546
MaeIII GTNAC 1 cut(s) 372
MalI GATC 6 cut(s) 73, 311, 384, 627, 866, 1137
MboI GATC 6 cut(s) 71, 309, 382, 625, 864, 1135
MboII GAAGA 8 cut(s) 35, 119, 319, 653, 668, 694, 697, 713
MfeI CAATTG 1 cut(s) 728
MflI RGATCY 1 cut(s) 309
MhlI GDGCHC 1 cut(s) 520
MluCI AATT 5 cut(s) 246, 402, 666, 728, 1049
MlyI GAGTC 3 cut(s) 335, 698, 895
MmeI TCCRAC 2 cut(s) 205, 676
MnlI CCTC 9 cut(s) 90, 412, 487, 681, 715, 900, 1104, 1142, 1191
MroXI GAANNNNTTC 1 cut(s) 660
MseI TTAA 3 cut(s) 261, 369, 447
MspA1I CMGCKG 1 cut(s) 1225
MspCI CTTAAG 1 cut(s) 260
MunI CAATTG 1 cut(s) 728
MwoI GCNNNNNNNGC 2 cut(s) 494, 530
NdeII GATC 6 cut(s) 71, 309, 382, 625, 864, 1135
NlaIII CATG 6 cut(s) 148, 355, 469, 540, 749, 1136
NspI RCATGY 3 cut(s) 355, 540, 749
NspV TTCGAA 1 cut(s) 680
PagI TCATGA 1 cut(s) 1132
PciI ACATGT 2 cut(s) 351, 745
PciSI GCTCTTC 1 cut(s) 18
PdmI GAANNNNTTC 1 cut(s) 660
PfeI GAWTC 6 cut(s) 164, 596, 677, 827, 839, 1079
PkrI GCNGC 4 cut(s) 190, 496, 535, 1224
PleI GAGTC 3 cut(s) 335, 698, 894
PpsI GAGTC 3 cut(s) 335, 698, 894
PscI ACATGT 2 cut(s) 351, 745
PshBI ATTAAT 1 cut(s) 447
Psp124BI GAGCTC 1 cut(s) 520
PsuI RGATCY 1 cut(s) 309
PvuII CAGCTG 1 cut(s) 1225
RsaI GTAC 2 cut(s) 143, 986
RsaNI GTAC 2 cut(s) 142, 985
SacI GAGCTC 1 cut(s) 520
SalI GTCGAC 1 cut(s) 255
SapI GCTCTTC 1 cut(s) 18
SaqAI TTAA 3 cut(s) 261, 369, 447
SatI GCNGC 4 cut(s) 189, 495, 534, 1223
Sau3AI GATC 6 cut(s) 71, 309, 382, 625, 864, 1135
SchI GAGTC 3 cut(s) 335, 698, 895
SduI GDGCHC 1 cut(s) 520
SfaNI GCATC 1 cut(s) 290
SfuI TTCGAA 1 cut(s) 680
SmlI CTYRAG 5 cut(s) 260, 519, 672, 738, 934
SmoI CTYRAG 5 cut(s) 260, 519, 672, 738, 934
Sse9I AATT 5 cut(s) 246, 402, 666, 728, 1049
SspMI CTAG 3 cut(s) 240, 276, 546
SstI GAGCTC 1 cut(s) 520
TaaI ACNGT 3 cut(s) 35, 457, 604
TaqI TCGA 6 cut(s) 66, 256, 364, 680, 863, 1077
TasI AATT 5 cut(s) 246, 402, 666, 728, 1049
TatI WGTACW 2 cut(s) 141, 984
TfiI GAWTC 6 cut(s) 164, 596, 677, 827, 839, 1079
Tru1I TTAA 3 cut(s) 261, 369, 447
Tru9I TTAA 3 cut(s) 261, 369, 447
TscAI CASTG 1 cut(s) 607
TseI GCWGC 4 cut(s) 188, 494, 533, 1222
TspDTI ATGAA 4 cut(s) 669, 1062, 1121, 1230
TspRI CASTG 1 cut(s) 607
Vha464I CTTAAG 1 cut(s) 260
VspI ATTAAT 1 cut(s) 447
XapI RAATTY 3 cut(s) 246, 402, 666
XceI RCATGY 3 cut(s) 355, 540, 749
XcmI CCANNNNNNNNNTGG 1 cut(s) 487
XmiI GTMKAC 1 cut(s) 256
XmnI GAANNNNTTC 1 cut(s) 660
XspI CTAG 3 cut(s) 240, 276, 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.