Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002192.1

Orthogroup ID

OG0018683

Physical Location & Seq

Genomic Coordinates Reverse (-)

155555 .. 155957

Gene Structure 403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002192.1_g000035.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

atgtattcagccgcacctcttctactggcacatgctcatgtggcatcatcatcaggtgttttaggagcaccaccagacctctgttcgactccatggactcaccggtcaaaggcgaaaaatgatgcaatgaagaaggtggcatgtgtggctgagcttctggttgaagcagtgaatggtggggtgaaggagttgtttataaacgagaagcgaattgagcttgaaatccaagcattggctgccaccatttcgcgctttatcaagcagactgataagtggttatcagtcgcacacatctcagaggaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005829 GO:0006810 GO:0007034 GO:0007275 GO:0008150 GO:0012505 GO:0016192 GO:0016197 GO:0022622 GO:0031082 GO:0031083 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045324 GO:0046907 GO:0048364 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0097708 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GCN5L1

Protein Analysis

101

Amino Acids

10.92

Weight (kDa)

6.9

Isoelectric Point (pI)

45.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018683)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002192.1_g000035
rosa_roxburghii	Rroxscaffold_1G00020400 Rroxscaffold_3G00236070
rosa_rugosa	Rorug05G0330000 Rorug07G0213200
rosa_samantha	Rh5BG406900 Rh5CG430700 Rh7BG346500 Rh7CG376700 Rh7DG353800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	197
AasI	GACNNNNNNGTC	1 cut(s)	103
AccB7I	CCANNNNNTGG	1 cut(s)	232
AccII	CGCG	1 cut(s)	250
AciI	CCGC	1 cut(s)	12
AfiI	CCNNNNNNNGG	2 cut(s)	109, 232
AgeI	ACCGGT	1 cut(s)	102
AgsI	TTSAA	2 cut(s)	164, 221
AluBI	AGCT	2 cut(s)	154, 217
AluI	AGCT	2 cut(s)	154, 217
Alw21I	GWGCWC	1 cut(s)	70
ApeKI	GCWGC	1 cut(s)	236
AsiGI	ACCGGT	1 cut(s)	102
AspLEI	GCGC	1 cut(s)	252
AsuHPI	GGTGA	2 cut(s)	92, 193
Bbv12I	GWGCWC	1 cut(s)	70
BbvI	GCAGC	1 cut(s)	223
BisI	GCNGC	2 cut(s)	12, 237
BlpI	GCTNAGC	1 cut(s)	150
BlsI	GCNGC	2 cut(s)	13, 238
BmsI	GCATC	2 cut(s)	53, 112
Bpu1102I	GCTNAGC	1 cut(s)	150
BsaJI	CCNNGG	1 cut(s)	92
BsaWI	WCCGGW	1 cut(s)	102
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 232
Bse118I	RCCGGY	1 cut(s)	102
Bse1I	ACTGG	1 cut(s)	30
Bse3DI	GCAATG	1 cut(s)	132
BseDI	CCNNGG	1 cut(s)	92
BseLI	CCNNNNNNNGG	2 cut(s)	109, 232
BseMI	GCAATG	1 cut(s)	132
BseMII	CTCAG	1 cut(s)	141
BseNI	ACTGG	1 cut(s)	30
BseXI	GCAGC	1 cut(s)	223
Bsh1236I	CGCG	1 cut(s)	250
BshTI	ACCGGT	1 cut(s)	102
BsiHKAI	GWGCWC	1 cut(s)	70
BsiSI	CCGG	1 cut(s)	103
BslI	CCNNNNNNNGG	2 cut(s)	109, 232
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp1720I	GCTNAGC	1 cut(s)	150
Bsp19I	CCATGG	1 cut(s)	92
BspACI	CCGC	1 cut(s)	12
BspCNI	CTCAG	1 cut(s)	142
BspFNI	CGCG	1 cut(s)	250
BsrDI	GCAATG	1 cut(s)	132
BsrFI	RCCGGY	1 cut(s)	102
BsrI	ACTGG	1 cut(s)	30
BssAI	RCCGGY	1 cut(s)	102
BssECI	CCNNGG	1 cut(s)	92
BssT1I	CCWWGG	1 cut(s)	92
Bst6I	CTCTTC	1 cut(s)	24
BstAPI	GCANNNNNTGC	1 cut(s)	236
BstDEI	CTNAG	2 cut(s)	150, 295
BstDSI	CCRYGG	1 cut(s)	92
BstFNI	CGCG	1 cut(s)	250
BstHHI	GCGC	1 cut(s)	252
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 146, 214, 236
BstNSI	RCATGY	2 cut(s)	35, 144
BstUI	CGCG	1 cut(s)	250
BstV1I	GCAGC	1 cut(s)	223
BtgI	CCRYGG	1 cut(s)	92
BtsI	GCAGTG	1 cut(s)	174
BtsIMutI	CAGTG	1 cut(s)	174
CfoI	GCGC	1 cut(s)	252
Cfr10I	RCCGGY	1 cut(s)	102
CspAI	ACCGGT	1 cut(s)	102
CviAII	CATG	4 cut(s)	32, 38, 93, 141
CviJI	RGCY	5 cut(s)	11, 149, 154, 217, 236
CviKI_1	RGCY	5 cut(s)	11, 149, 154, 217, 236
DdeI	CTNAG	2 cut(s)	150, 295
DrdI	GACNNNNNNGTC	1 cut(s)	103
DseDI	GACNNNNNNGTC	1 cut(s)	103
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
Eco130I	CCWWGG	1 cut(s)	92
EcoT14I	CCWWGG	1 cut(s)	92
ErhI	CCWWGG	1 cut(s)	92
FaeI	CATG	4 cut(s)	35, 41, 96, 144
FaiI	YATR	5 cut(s)	33, 39, 94, 142, 197
FatI	CATG	4 cut(s)	31, 37, 92, 140
Fnu4HI	GCNGC	2 cut(s)	12, 237
Fsp4HI	GCNGC	2 cut(s)	12, 237
GlaI	GCGC	1 cut(s)	251
GluI	GCNGC	2 cut(s)	12, 237
HapII	CCGG	1 cut(s)	103
HhaI	GCGC	1 cut(s)	252
Hin1II	CATG	4 cut(s)	35, 41, 96, 144
Hin6I	GCGC	1 cut(s)	250
HinP1I	GCGC	1 cut(s)	250
HinfI	GANTC	2 cut(s)	88, 97
HpaII	CCGG	1 cut(s)	103
HphI	GGTGA	2 cut(s)	92, 193
Hpy188I	TCNGA	1 cut(s)	298
HpyAV	CCTTC	2 cut(s)	127, 178
HpyCH4V	TGCA	1 cut(s)	125
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 146, 214, 236
HpyF3I	CTNAG	2 cut(s)	150, 295
Hsp92II	CATG	4 cut(s)	35, 41, 96, 144
HspAI	GCGC	1 cut(s)	250
LmnI	GCTCC	1 cut(s)	65
LpnPI	CCDG	5 cut(s)	11, 39, 87, 116, 143
Lsp1109I	GCAGC	1 cut(s)	223
LweI	GCATC	2 cut(s)	53, 112
MboII	GAAGA	2 cut(s)	11, 142
MhlI	GDGCHC	1 cut(s)	70
MluCI	AATT	1 cut(s)	210
MlyI	GAGTC	2 cut(s)	82, 91
MnlI	CCTC	3 cut(s)	27, 89, 292
MslI	CAYNNNNRTG	1 cut(s)	36
MspI	CCGG	1 cut(s)	103
MvnI	CGCG	1 cut(s)	250
MwoI	GCNNNNNNNGC	4 cut(s)	41, 146, 214, 236
NcoI	CCATGG	1 cut(s)	92
NlaIII	CATG	4 cut(s)	35, 41, 96, 144
NspI	RCATGY	2 cut(s)	35, 144
PflMI	CCANNNNNTGG	1 cut(s)	232
PinAI	ACCGGT	1 cut(s)	102
PkrI	GCNGC	2 cut(s)	13, 238
PleI	GAGTC	2 cut(s)	82, 91
PpsI	GAGTC	2 cut(s)	82, 91
PsiI	TTATAA	1 cut(s)	197
RseI	CAYNNNNRTG	1 cut(s)	36
SatI	GCNGC	2 cut(s)	12, 237
SchI	GAGTC	2 cut(s)	82, 91
SduI	GDGCHC	1 cut(s)	70
SetI	ASST	6 cut(s)	19, 58, 81, 138, 156, 219
SfaNI	GCATC	2 cut(s)	53, 112
SmiMI	CAYNNNNRTG	1 cut(s)	36
Sse9I	AATT	1 cut(s)	210
SsiI	CCGC	1 cut(s)	12
StyI	CCWWGG	1 cut(s)	92
TaqI	TCGA	1 cut(s)	86
TasI	AATT	1 cut(s)	210
TauI	GCSGC	1 cut(s)	14
TscAI	CASTG	1 cut(s)	174
TseI	GCWGC	1 cut(s)	236
TspDTI	ATGAA	1 cut(s)	143
TspRI	CASTG	1 cut(s)	174
Van91I	CCANNNNNTGG	1 cut(s)	232
XceI	RCATGY	2 cut(s)	35, 144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.