Rh7BG346500

Biogenesis of lysosome-related organelles complex 1 subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0018683
Physical Location & Seq
Forward (+)
36221009 .. 36222869
1861 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG346500.1

Sequence Viewer

Length: 381 bp
ATGGCAGAGAAGGCGAAAAATGATGCAATGAAGAAGGTGGCATGTGTGGCTGAGCTTCTGGTCGAAGCAGTGAATGATGGGGTGAAGGAGTTGTTTATAAACGAGAAGCGAATTGAGCTTGAAATCCAAGCATTGGCTGCCACCATTTCGCGCTTCATCAAGAGACTGATAAGTGGTTATCAGTCGCACACATCTCAGAGGAATGATCAGGGACTGAGAGCTTTGAGGCTTCAGCATGAAGATGAGATTAAGACGCTTCAGGAGGATTGGATCTTCCAAAGAGGAGAAGCAGAGGGCATTACTGCAATTGCACAGGGCCTTCATCAAGAGGGTTTACCTGCAGTCTTAGTTGTGCTTTTGGTTGGGTTTGTTGGTTCTTAG

Protein Analysis

126

Amino Acids

13.98

Weight (kDa)

5.62

Isoelectric Point (pI)

43.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GCN5L1 PF06320 2 - 55 1.6e-10 GCN5-like protein 1 (GCN5L1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 98
Acc36I ACCTGC 1 cut(s) 346
AccB7I CCANNNNNTGG 1 cut(s) 133
AccII CGCG 1 cut(s) 151
AclWI GGATC 1 cut(s) 278
AcuI CTGAAG 2 cut(s) 215, 242
AfiI CCNNNNNNNGG 1 cut(s) 133
AgsI TTSAA 1 cut(s) 122
AluBI AGCT 3 cut(s) 55, 118, 221
AluI AGCT 3 cut(s) 55, 118, 221
Alw26I GTCTC 1 cut(s) 157
AlwI GGATC 1 cut(s) 278
AlwNI CAGNNNCTG 1 cut(s) 214
AoxI GGCC 1 cut(s) 316
ApeKI GCWGC 1 cut(s) 137
AspLEI GCGC 1 cut(s) 153
AspS9I GGNCC 1 cut(s) 316
AsuHPI GGTGA 1 cut(s) 94
BbvI GCAGC 1 cut(s) 124
BccI CCATC 1 cut(s) 71
BclI TGATCA 1 cut(s) 205
BcoDI GTCTC 1 cut(s) 157
BfmI CTRYAG 1 cut(s) 339
BfuAI ACCTGC 1 cut(s) 346
BisI GCNGC 1 cut(s) 138
BlpI GCTNAGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 139
BmgT120I GGNCC 1 cut(s) 316
BmsI GCATC 1 cut(s) 13
Bpu1102I GCTNAGC 1 cut(s) 51
Bsc4I CCNNNNNNNGG 1 cut(s) 133
Bse3DI GCAATG 1 cut(s) 33
BseLI CCNNNNNNNGG 1 cut(s) 133
BseMI GCAATG 1 cut(s) 33
BseMII CTCAG 3 cut(s) 42, 206, 209
BseRI GAGGAG 1 cut(s) 297
BseXI GCAGC 1 cut(s) 124
Bsh1236I CGCG 1 cut(s) 151
BshFI GGCC 1 cut(s) 318
BslFI GGGAC 1 cut(s) 225
BslI CCNNNNNNNGG 1 cut(s) 133
BsmAI GTCTC 1 cut(s) 157
BsmFI GGGAC 1 cut(s) 225
BsnI GGCC 1 cut(s) 318
Bsp143I GATC 2 cut(s) 205, 270
Bsp1720I GCTNAGC 1 cut(s) 51
BspANI GGCC 1 cut(s) 318
BspCNI CTCAG 3 cut(s) 43, 207, 208
BspFNI CGCG 1 cut(s) 151
BspMAI CTGCAG 1 cut(s) 343
BspMI ACCTGC 1 cut(s) 346
BspPI GGATC 1 cut(s) 278
BsrDI GCAATG 1 cut(s) 33
BssMI GATC 2 cut(s) 205, 270
BstAPI GCANNNNNTGC 1 cut(s) 137
BstDEI CTNAG 5 cut(s) 51, 195, 215, 346, 378
BstFNI CGCG 1 cut(s) 151
BstHHI GCGC 1 cut(s) 153
BstKTI GATC 2 cut(s) 208, 273
BstMAI GTCTC 1 cut(s) 157
BstMBI GATC 2 cut(s) 205, 270
BstMWI GCNNNNNNNGC 4 cut(s) 11, 47, 115, 137
BstNSI RCATGY 1 cut(s) 45
BstSFI CTRYAG 1 cut(s) 339
BstUI CGCG 1 cut(s) 151
BstV1I GCAGC 1 cut(s) 124
BstX2I RGATCY 1 cut(s) 270
BstYI RGATCY 1 cut(s) 270
BsuRI GGCC 1 cut(s) 318
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 75
BveI ACCTGC 1 cut(s) 346
CaiI CAGNNNCTG 1 cut(s) 214
CfoI GCGC 1 cut(s) 153
Cfr13I GGNCC 1 cut(s) 316
CseI GACGC 1 cut(s) 262
CviAII CATG 2 cut(s) 42, 236
CviJI RGCY 7 cut(s) 50, 55, 118, 137, 221, 229, 318
CviKI_1 RGCY 7 cut(s) 50, 55, 118, 137, 221, 229, 318
DdeI CTNAG 5 cut(s) 51, 195, 215, 346, 378
DpnI GATC 2 cut(s) 207, 272
DpnII GATC 2 cut(s) 205, 270
Eco57I CTGAAG 2 cut(s) 215, 242
EcoO109I RGGNCCY 1 cut(s) 316
FaeI CATG 2 cut(s) 45, 239
FaiI YATR 3 cut(s) 43, 98, 237
FaqI GGGAC 1 cut(s) 225
FatI CATG 2 cut(s) 41, 235
FbaI TGATCA 1 cut(s) 205
Fnu4HI GCNGC 1 cut(s) 138
Fsp4HI GCNGC 1 cut(s) 138
GlaI GCGC 1 cut(s) 152
GluI GCNGC 1 cut(s) 138
HaeIII GGCC 1 cut(s) 318
HgaI GACGC 1 cut(s) 262
HhaI GCGC 1 cut(s) 153
Hin1II CATG 2 cut(s) 45, 239
Hin6I GCGC 1 cut(s) 151
HinP1I GCGC 1 cut(s) 151
HphI GGTGA 1 cut(s) 94
Hpy166II GTNNAC 1 cut(s) 335
Hpy188I TCNGA 1 cut(s) 198
Hpy188III TCNNGA 3 cut(s) 160, 260, 326
Hpy8I GTNNAC 1 cut(s) 335
HpyAV CCTTC 4 cut(s) 4, 28, 79, 329
HpyCH4V TGCA 4 cut(s) 26, 305, 311, 341
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 47, 115, 137
HpyF3I CTNAG 5 cut(s) 51, 195, 215, 346, 378
Hsp92II CATG 2 cut(s) 45, 239
HspAI GCGC 1 cut(s) 151
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 2 cut(s) 205, 270
LpnPI CCDG 5 cut(s) 44, 194, 245, 299, 351
Lsp1109I GCAGC 1 cut(s) 124
LweI GCATC 1 cut(s) 13
MalI GATC 2 cut(s) 207, 272
MboI GATC 2 cut(s) 205, 270
MboII GAAGA 3 cut(s) 43, 251, 265
MfeI CAATTG 1 cut(s) 306
MflI RGATCY 1 cut(s) 270
MluCI AATT 2 cut(s) 111, 306
MnlI CCTC 6 cut(s) 192, 219, 256, 275, 286, 322
MseI TTAA 1 cut(s) 249
MslI CAYNNNNRTG 1 cut(s) 240
MunI CAATTG 1 cut(s) 306
MvnI CGCG 1 cut(s) 151
MwoI GCNNNNNNNGC 4 cut(s) 11, 47, 115, 137
NdeII GATC 2 cut(s) 205, 270
NlaIII CATG 2 cut(s) 45, 239
NspI RCATGY 1 cut(s) 45
PflMI CCANNNNNTGG 1 cut(s) 133
PkrI GCNGC 1 cut(s) 139
PsiI TTATAA 1 cut(s) 98
PspPI GGNCC 1 cut(s) 316
PstI CTGCAG 1 cut(s) 343
PstNI CAGNNNCTG 1 cut(s) 214
PsuI RGATCY 1 cut(s) 270
RseI CAYNNNNRTG 1 cut(s) 240
SaqAI TTAA 1 cut(s) 249
SatI GCNGC 1 cut(s) 138
Sau3AI GATC 2 cut(s) 205, 270
Sau96I GGNCC 1 cut(s) 316
SetI ASST 5 cut(s) 39, 57, 120, 223, 340
SfaNI GCATC 1 cut(s) 13
SfcI CTRYAG 1 cut(s) 339
SmiMI CAYNNNNRTG 1 cut(s) 240
Sse9I AATT 2 cut(s) 111, 306
TaqI TCGA 1 cut(s) 63
TasI AATT 2 cut(s) 111, 306
Tru1I TTAA 1 cut(s) 249
Tru9I TTAA 1 cut(s) 249
TscAI CASTG 1 cut(s) 75
TseI GCWGC 1 cut(s) 137
TspDTI ATGAA 4 cut(s) 44, 145, 252, 311
TspRI CASTG 1 cut(s) 75
Van91I CCANNNNNTGG 1 cut(s) 133
XceI RCATGY 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.