Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0018683

Physical Location & Seq

Genomic Coordinates Forward (+)

39774412 .. 39775415

Gene Structure 1004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0330000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGAAGGAGTATGATGGGATTGCACTGCCGCACTCGGTGGCCTTGAATGAGTTATTTTTCTGGGTACGTCTTTCTGGTATACCACCACTCTTTGAGGACAAAGAAACTATTAGAGATATTGTTGCTATTGCGGGCAAGGTCATGGAATTAGATGATAAACTTTTTGACAATACTGGTAAGATAAGGGTTAGGGTTTCCCGGGAGCTTTCCAAGCCTTTTGATCTGAAAAAGAAAGTCAAACTTGCACCTGGTGTTGAAGCAGAGATCAGTTTCTTCTTTGAAAACCTTGTGGGTAAGTGTAACTACTGTGATTTGATTTTCCATGAGCATGGTGTTTGTCCTGCAGCAGATGTTAGGGCTCTTCCCCGTATGGAGCCAAACCCGGTGCAACGGAAATTGGATATCACTGGTCCTTCTCGGAGTTTTATGCAAAGCCGTTTTGAGAAGGGCATGTTCAAGTTCCATGGACTTCAAACCCCGATATTACCATCGGTGGCACGCTCCCTTTTTCACTCAAAAGAGCATGGTGGCCATAAACCTGTGGTGTTGCGGGGATCGGATAGTAGATCGGCCTCCAGCAGGGATGAGGAGAATACCACCTTGGCTTTGGTTCCGGTGGAGACAACTGAGTCAACTAAGCGAGATTGGCAGCCCTCTGACTATCGCTCCCCAACAAAGCTGAAAGTACTCTTGCTTGAGTTGTTTACTTCCTTGGGATGCAATGAAGCTCCATCCAAGAAATTGAAGATGCCGAAGTTCAGTTCTAAATTTAATGCGAAATCCCTGGGATTGATTGAAGCTCCGGGTAGCATCCTTGTTCCAAAGTTTGAGACTGACAGTTCTGGGACCAAAAAGAAACGAGGCAGGCCCTTGGGATCAAAGAACAAAAAGCCACCGAAGCCGAAAAATGTTGCTGCTGCACAGGAAGCTTGCTTGGCTTTTTTAACAAAACCTCCTAGCCCTAGTGTCAAGGGCAAGGAGAAAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005829 GO:0006810 GO:0007034 GO:0007275 GO:0008150 GO:0012505 GO:0016192 GO:0016197 GO:0022622 GO:0031082 GO:0031083 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045324 GO:0046907 GO:0048364 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0097708 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GCN5L1

Protein Analysis

329

Amino Acids

36.6

Weight (kDa)

9.66

Isoelectric Point (pI)

45.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018683)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002192.1_g000035
rosa_roxburghii	Rroxscaffold_1G00020400 Rroxscaffold_3G00236070
rosa_rugosa	Rorug05G0330000 Rorug07G0213200
rosa_samantha	Rh5BG406900 Rh5CG430700 Rh7BG346500 Rh7CG376700 Rh7DG353800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	628
AccI	GTMKAC	1 cut(s)	79
AciI	CCGC	3 cut(s)	29, 131, 550
AclWI	GGATC	2 cut(s)	562, 883
AcoI	YGGCCR	1 cut(s)	529
AcsI	RAATTY	1 cut(s)	767
AdeI	CACNNNGTG	2 cut(s)	37, 251
AfaI	GTAC	2 cut(s)	66, 687
AfiI	CCNNNNNNNGG	1 cut(s)	579
AgsI	TTSAA	7 cut(s)	46, 257, 281, 457, 473, 745, 797
AjnI	CCWGG	2 cut(s)	247, 783
AjuI	GAANNNNNNNTTGG	2 cut(s)	584, 616
AluBI	AGCT	5 cut(s)	205, 679, 728, 800, 929
AluI	AGCT	5 cut(s)	205, 679, 728, 800, 929
Alw26I	GTCTC	2 cut(s)	614, 824
AlwI	GGATC	2 cut(s)	562, 883
Ama87I	CYCGRG	1 cut(s)	198
AoxI	GGCC	4 cut(s)	39, 529, 570, 866
ApeKI	GCWGC	4 cut(s)	344, 649, 914, 917
ApoI	RAATTY	1 cut(s)	767
AspS9I	GGNCC	3 cut(s)	410, 846, 867
AsuC2I	CCSGG	4 cut(s)	199, 200, 383, 804
AvaI	CYCGRG	1 cut(s)	198
AvaII	GGWCC	2 cut(s)	410, 846
BalI	TGGCCA	1 cut(s)	531
BanII	GRGCYC	1 cut(s)	361
BbvI	GCAGC	4 cut(s)	356, 661, 901, 904
BccI	CCATC	3 cut(s)	8, 496, 739
BceAI	ACGGC	1 cut(s)	420
BciT130I	CCWGG	2 cut(s)	249, 785
BcnI	CCSGG	4 cut(s)	199, 200, 383, 804
BcoDI	GTCTC	2 cut(s)	614, 824
BfaI	CTAG	2 cut(s)	957, 963
BfmI	CTRYAG	1 cut(s)	342
BisI	GCNGC	5 cut(s)	29, 345, 650, 915, 918
BlsI	GCNGC	5 cut(s)	30, 346, 651, 916, 919
BmcAI	AGTACT	1 cut(s)	687
Bme1390I	CCNGG	6 cut(s)	199, 200, 249, 383, 785, 804
Bme18I	GGWCC	2 cut(s)	410, 846
BmeT110I	CYCGRG	1 cut(s)	198
BmgT120I	GGNCC	3 cut(s)	410, 846, 867
BmiI	GGNNCC	3 cut(s)	375, 612, 847
BmrFI	CCNGG	6 cut(s)	199, 200, 249, 383, 785, 804
BmsI	GCATC	3 cut(s)	707, 738, 819
BpmI	CTGGAG	1 cut(s)	559
BpuEI	CTTGAG	1 cut(s)	716
BpuMI	CCSGG	4 cut(s)	199, 200, 383, 804
BsaJI	CCNNGG	7 cut(s)	198, 463, 600, 711, 783, 784, 870
BsaWI	WCCGGW	1 cut(s)	613
BsaXI	ACNNNNNCTCC	4 cut(s)	650, 680, 937, 967
Bsc4I	CCNNNNNNNGG	1 cut(s)	579
Bse1I	ACTGG	2 cut(s)	178, 412
Bse3DI	GCAATG	1 cut(s)	727
BseBI	CCWGG	2 cut(s)	249, 785
BseDI	CCNNGG	7 cut(s)	198, 463, 600, 711, 783, 784, 870
BseGI	GGATG	4 cut(s)	589, 722, 731, 810
BseLI	CCNNNNNNNGG	1 cut(s)	579
BseMI	GCAATG	1 cut(s)	727
BseMII	CTCAG	1 cut(s)	618
BseNI	ACTGG	2 cut(s)	178, 412
BseRI	GAGGAG	1 cut(s)	602
BseXI	GCAGC	4 cut(s)	356, 661, 901, 904
BsgI	GTGCAG	1 cut(s)	903
BshFI	GGCC	4 cut(s)	41, 531, 572, 868
BsiHKCI	CYCGRG	1 cut(s)	198
BsiSI	CCGG	4 cut(s)	199, 383, 614, 803
BslFI	GGGAC	1 cut(s)	859
BslI	CCNNNNNNNGG	1 cut(s)	579
BsmAI	GTCTC	2 cut(s)	614, 824
BsmFI	GGGAC	1 cut(s)	859
BsnI	GGCC	4 cut(s)	41, 531, 572, 868
BsoBI	CYCGRG	1 cut(s)	198
Bsp1286I	GDGCHC	1 cut(s)	361
Bsp143I	GATC	5 cut(s)	220, 264, 554, 566, 875
Bsp19I	CCATGG	1 cut(s)	463
BspACI	CCGC	3 cut(s)	29, 131, 550
BspANI	GGCC	4 cut(s)	41, 531, 572, 868
BspCNI	CTCAG	1 cut(s)	619
BspLI	GGNNCC	3 cut(s)	375, 612, 847
BspMAI	CTGCAG	1 cut(s)	346
BspPI	GGATC	2 cut(s)	562, 883
BspQI	GCTCTTC	1 cut(s)	366
BsrDI	GCAATG	1 cut(s)	727
BsrI	ACTGG	2 cut(s)	178, 412
BssECI	CCNNGG	7 cut(s)	198, 463, 600, 711, 783, 784, 870
BssMI	GATC	5 cut(s)	220, 264, 554, 566, 875
BssNAI	GTATAC	1 cut(s)	80
BssT1I	CCWWGG	4 cut(s)	463, 600, 711, 870
Bst1107I	GTATAC	1 cut(s)	80
Bst2UI	CCWGG	2 cut(s)	249, 785
Bst4CI	ACNGT	2 cut(s)	308, 839
Bst6I	CTCTTC	1 cut(s)	366
BstC8I	GCNNGC	4 cut(s)	133, 499, 866, 931
BstDEI	CTNAG	2 cut(s)	627, 636
BstDSI	CCRYGG	1 cut(s)	463
BstENI	CCTNNNNNAGG	1 cut(s)	577
BstF5I	GGATG	4 cut(s)	589, 722, 731, 810
BstKTI	GATC	5 cut(s)	223, 267, 557, 569, 878
BstMAI	GTCTC	2 cut(s)	614, 824
BstMBI	GATC	5 cut(s)	220, 264, 554, 566, 875
BstMWI	GCNNNNNNNGC	5 cut(s)	211, 646, 898, 926, 935
BstNI	CCWGG	2 cut(s)	249, 785
BstNSI	RCATGY	1 cut(s)	454
BstSCI	CCNGG	6 cut(s)	197, 198, 247, 381, 783, 802
BstSFI	CTRYAG	1 cut(s)	342
BstV1I	GCAGC	4 cut(s)	356, 661, 901, 904
BstXI	CCANNNNNNTGG	1 cut(s)	329
BstZ17I	GTATAC	1 cut(s)	80
BsuRI	GGCC	4 cut(s)	41, 531, 572, 868
BtgI	CCRYGG	1 cut(s)	463
BtsCI	GGATG	4 cut(s)	589, 722, 731, 810
BtsI	GCAGTG	1 cut(s)	23
BtsIMutI	CAGTG	2 cut(s)	23, 405
Cac8I	GCNNGC	4 cut(s)	133, 499, 866, 931
Cfr13I	GGNCC	3 cut(s)	410, 846, 867
Cfr9I	CCCGGG	1 cut(s)	198
CsiI	ACCWGGT	1 cut(s)	247
Csp6I	GTAC	2 cut(s)	65, 686
CviAII	CATG	6 cut(s)	142, 323, 329, 451, 464, 524
CviQI	GTAC	2 cut(s)	65, 686
DdeI	CTNAG	2 cut(s)	627, 636
DpnI	GATC	5 cut(s)	222, 266, 556, 568, 877
DpnII	GATC	5 cut(s)	220, 264, 554, 566, 875
DraIII	CACNNNGTG	2 cut(s)	37, 251
DrdI	GACNNNNNNGTC	1 cut(s)	628
DseDI	GACNNNNNNGTC	1 cut(s)	628
EaeI	YGGCCR	1 cut(s)	529
Eam1104I	CTCTTC	1 cut(s)	366
EarI	CTCTTC	1 cut(s)	366
Eco130I	CCWWGG	4 cut(s)	463, 600, 711, 870
Eco24I	GRGCYC	1 cut(s)	361
Eco32I	GATATC	1 cut(s)	403
Eco47I	GGWCC	2 cut(s)	410, 846
Eco88I	CYCGRG	1 cut(s)	198
EcoNI	CCTNNNNNAGG	1 cut(s)	577
EcoO109I	RGGNCCY	1 cut(s)	867
EcoRII	CCWGG	2 cut(s)	247, 783
EcoRV	GATATC	1 cut(s)	403
EcoT14I	CCWWGG	4 cut(s)	463, 600, 711, 870
EcoT38I	GRGCYC	1 cut(s)	361
ErhI	CCWWGG	4 cut(s)	463, 600, 711, 870
FaeI	CATG	6 cut(s)	145, 326, 332, 454, 467, 527
FalI	AAGNNNNNCTT	2 cut(s)	225, 257
FaqI	GGGAC	1 cut(s)	859
FatI	CATG	6 cut(s)	141, 322, 328, 450, 463, 523
FauI	CCCGC	2 cut(s)	124, 543
FblI	GTMKAC	1 cut(s)	79
Fnu4HI	GCNGC	5 cut(s)	29, 345, 650, 915, 918
FokI	GGATG	4 cut(s)	596, 718, 729, 797
FriOI	GRGCYC	1 cut(s)	361
Fsp4HI	GCNGC	5 cut(s)	29, 345, 650, 915, 918
FspBI	CTAG	2 cut(s)	957, 963
GluI	GCNGC	5 cut(s)	29, 345, 650, 915, 918
GsuI	CTGGAG	1 cut(s)	559
HaeIII	GGCC	4 cut(s)	41, 531, 572, 868
HapII	CCGG	4 cut(s)	199, 383, 614, 803
Hin1II	CATG	6 cut(s)	145, 326, 332, 454, 467, 527
HincII	GTYRAC	1 cut(s)	633
HindII	GTYRAC	1 cut(s)	633
HindIII	AAGCTT	1 cut(s)	927
HinfI	GANTC	1 cut(s)	629
HpaII	CCGG	4 cut(s)	199, 383, 614, 803
Hpy166II	GTNNAC	3 cut(s)	80, 633, 705
Hpy188I	TCNGA	4 cut(s)	225, 420, 559, 658
Hpy8I	GTNNAC	3 cut(s)	80, 633, 705
HpyAV	CCTTC	2 cut(s)	423, 439
HpyCH4III	ACNGT	2 cut(s)	308, 839
HpyCH4IV	ACGT	1 cut(s)	67
HpyCH4V	TGCA	7 cut(s)	23, 245, 344, 388, 430, 720, 920
HpyF10VI	GCNNNNNNNGC	5 cut(s)	211, 646, 898, 926, 935
HpyF3I	CTNAG	2 cut(s)	627, 636
HpySE526I	ACGT	1 cut(s)	67
Hsp92II	CATG	6 cut(s)	145, 326, 332, 454, 467, 527
Kzo9I	GATC	5 cut(s)	220, 264, 554, 566, 875
LguI	GCTCTTC	1 cut(s)	366
LmnI	GCTCC	6 cut(s)	202, 373, 506, 671, 733, 805
Lsp1109I	GCAGC	4 cut(s)	356, 661, 901, 904
LweI	GCATC	3 cut(s)	707, 738, 819
MabI	ACCWGGT	1 cut(s)	247
MaeI	CTAG	2 cut(s)	957, 963
MaeII	ACGT	1 cut(s)	67
MaeIII	GTNAC	1 cut(s)	299
MalI	GATC	5 cut(s)	222, 266, 556, 568, 877
MboI	GATC	5 cut(s)	220, 264, 554, 566, 875
MboII	GAAGA	3 cut(s)	265, 353, 757
MhlI	GDGCHC	1 cut(s)	361
MlsI	TGGCCA	1 cut(s)	531
MluCI	AATT	4 cut(s)	146, 395, 740, 767
MluNI	TGGCCA	1 cut(s)	531
MlyI	GAGTC	1 cut(s)	638
MnlI	CCTC	6 cut(s)	88, 580, 583, 664, 854, 963
Mox20I	TGGCCA	1 cut(s)	531
MscI	TGGCCA	1 cut(s)	531
MseI	TTAA	2 cut(s)	771, 944
MslI	CAYNNNNRTG	1 cut(s)	327
Msp20I	TGGCCA	1 cut(s)	531
MspI	CCGG	4 cut(s)	199, 383, 614, 803
MspR9I	CCNGG	6 cut(s)	199, 200, 249, 383, 785, 804
MvaI	CCWGG	2 cut(s)	249, 785
MwoI	GCNNNNNNNGC	5 cut(s)	211, 646, 898, 926, 935
NciI	CCSGG	4 cut(s)	199, 200, 383, 804
NcoI	CCATGG	1 cut(s)	463
NdeII	GATC	5 cut(s)	220, 264, 554, 566, 875
NlaIII	CATG	6 cut(s)	145, 326, 332, 454, 467, 527
NlaIV	GGNNCC	3 cut(s)	375, 612, 847
NspI	RCATGY	1 cut(s)	454
PasI	CCCWGGG	1 cut(s)	784
PciSI	GCTCTTC	1 cut(s)	366
PkrI	GCNGC	5 cut(s)	30, 346, 651, 916, 919
PleI	GAGTC	1 cut(s)	637
PpsI	GAGTC	1 cut(s)	637
Psp6I	CCWGG	2 cut(s)	247, 783
PspGI	CCWGG	2 cut(s)	247, 783
PspN4I	GGNNCC	3 cut(s)	375, 612, 847
PspPI	GGNCC	3 cut(s)	410, 846, 867
PstI	CTGCAG	1 cut(s)	346
RsaI	GTAC	2 cut(s)	66, 687
RsaNI	GTAC	2 cut(s)	65, 686
RseI	CAYNNNNRTG	1 cut(s)	327
SapI	GCTCTTC	1 cut(s)	366
SaqAI	TTAA	2 cut(s)	771, 944
SatI	GCNGC	5 cut(s)	29, 345, 650, 915, 918
Sau3AI	GATC	5 cut(s)	220, 264, 554, 566, 875
Sau96I	GGNCC	3 cut(s)	410, 846, 867
ScaI	AGTACT	1 cut(s)	687
SchI	GAGTC	1 cut(s)	638
ScrFI	CCNGG	6 cut(s)	199, 200, 249, 383, 785, 804
SduI	GDGCHC	1 cut(s)	361
SexAI	ACCWGGT	1 cut(s)	247
SfaNI	GCATC	3 cut(s)	707, 738, 819
SfcI	CTRYAG	1 cut(s)	342
SinI	GGWCC	2 cut(s)	410, 846
SmaI	CCCGGG	1 cut(s)	200
SmiMI	CAYNNNNRTG	1 cut(s)	327
SmlI	CTYRAG	1 cut(s)	695
SmoI	CTYRAG	1 cut(s)	695
Sse9I	AATT	4 cut(s)	146, 395, 740, 767
SsiI	CCGC	3 cut(s)	29, 131, 550
SspMI	CTAG	2 cut(s)	957, 963
StyD4I	CCNGG	6 cut(s)	197, 198, 247, 381, 783, 802
StyI	CCWWGG	4 cut(s)	463, 600, 711, 870
TaaI	ACNGT	2 cut(s)	308, 839
TaiI	ACGT	1 cut(s)	70
TasI	AATT	4 cut(s)	146, 395, 740, 767
TatI	WGTACW	1 cut(s)	685
TauI	GCSGC	1 cut(s)	31
Tru1I	TTAA	2 cut(s)	771, 944
Tru9I	TTAA	2 cut(s)	771, 944
TscAI	CASTG	2 cut(s)	30, 412
TseI	GCWGC	4 cut(s)	344, 649, 914, 917
TspDTI	ATGAA	2 cut(s)	17, 738
TspGWI	ACGGA	1 cut(s)	406
TspMI	CCCGGG	1 cut(s)	198
TspRI	CASTG	2 cut(s)	30, 412
VpaK11BI	GGWCC	2 cut(s)	410, 846
XagI	CCTNNNNNAGG	1 cut(s)	577
XapI	RAATTY	1 cut(s)	767
XceI	RCATGY	1 cut(s)	454
XcmI	CCANNNNNNNNNTGG	1 cut(s)	604
XmaI	CCCGGG	1 cut(s)	198
XmiI	GTMKAC	1 cut(s)	79
XspI	CTAG	2 cut(s)	957, 963
ZrmI	AGTACT	1 cut(s)	687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.