Rh7DG353800

Biogenesis of lysosome-related organelles complex 1 subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0018683
Physical Location & Seq
Forward (+)
47104857 .. 47105167
311 bp
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UTR
Exon/CDS
Intron
Rh7DG353800.1

Sequence Viewer

Length: 210 bp
ATGGACTCACCGAAGGCGAAAAATGATGCAATGAAGAAGGTGGCATGTGTGGCTGAGCTTCTGGTTGAAGCAGTGAATGGTGGGGTGAAGGAGTTGTTTATAAACGAGAAGCGAATTGAGCTTGAAATCCAAGCATTGGCTGCCACCATTTCGCGCTTTATCAAGCAGACTGATAAGTGGTTATCAGTCGCACACATCTCAGAGGAATGA

Protein Analysis

69

Amino Acids

7.67

Weight (kDa)

5.81

Isoelectric Point (pI)

54.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GCN5L1 PF06320 5 - 65 4.3e-15 GCN5-like protein 1 (GCN5L1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 101
AccB7I CCANNNNNTGG 1 cut(s) 136
AccII CGCG 1 cut(s) 154
AfiI CCNNNNNNNGG 1 cut(s) 136
AgsI TTSAA 2 cut(s) 68, 125
AluBI AGCT 2 cut(s) 58, 121
AluI AGCT 2 cut(s) 58, 121
ApeKI GCWGC 1 cut(s) 140
AspLEI GCGC 1 cut(s) 156
AsuHPI GGTGA 1 cut(s) 97
BbvI GCAGC 1 cut(s) 127
BisI GCNGC 1 cut(s) 141
BlpI GCTNAGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 142
BmsI GCATC 1 cut(s) 16
Bpu1102I GCTNAGC 1 cut(s) 54
Bsc4I CCNNNNNNNGG 1 cut(s) 136
Bse3DI GCAATG 1 cut(s) 36
BseLI CCNNNNNNNGG 1 cut(s) 136
BseMI GCAATG 1 cut(s) 36
BseMII CTCAG 1 cut(s) 45
BseXI GCAGC 1 cut(s) 127
Bsh1236I CGCG 1 cut(s) 154
BslI CCNNNNNNNGG 1 cut(s) 136
Bsp1720I GCTNAGC 1 cut(s) 54
BspCNI CTCAG 1 cut(s) 46
BspFNI CGCG 1 cut(s) 154
BsrDI GCAATG 1 cut(s) 36
BstAPI GCANNNNNTGC 1 cut(s) 140
BstDEI CTNAG 2 cut(s) 54, 199
BstFNI CGCG 1 cut(s) 154
BstHHI GCGC 1 cut(s) 156
BstMWI GCNNNNNNNGC 3 cut(s) 50, 118, 140
BstNSI RCATGY 1 cut(s) 48
BstUI CGCG 1 cut(s) 154
BstV1I GCAGC 1 cut(s) 127
BtsI GCAGTG 1 cut(s) 78
BtsIMutI CAGTG 1 cut(s) 78
CfoI GCGC 1 cut(s) 156
CviAII CATG 1 cut(s) 45
CviJI RGCY 4 cut(s) 53, 58, 121, 140
CviKI_1 RGCY 4 cut(s) 53, 58, 121, 140
DdeI CTNAG 2 cut(s) 54, 199
FaeI CATG 1 cut(s) 48
FaiI YATR 2 cut(s) 46, 101
FatI CATG 1 cut(s) 44
Fnu4HI GCNGC 1 cut(s) 141
Fsp4HI GCNGC 1 cut(s) 141
GlaI GCGC 1 cut(s) 155
GluI GCNGC 1 cut(s) 141
HhaI GCGC 1 cut(s) 156
Hin1II CATG 1 cut(s) 48
Hin6I GCGC 1 cut(s) 154
HinP1I GCGC 1 cut(s) 154
HinfI GANTC 1 cut(s) 5
HphI GGTGA 1 cut(s) 97
Hpy188I TCNGA 1 cut(s) 202
HpyAV CCTTC 3 cut(s) 7, 31, 82
HpyCH4V TGCA 1 cut(s) 29
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 118, 140
HpyF3I CTNAG 2 cut(s) 54, 199
Hsp92II CATG 1 cut(s) 48
HspAI GCGC 1 cut(s) 154
LpnPI CCDG 1 cut(s) 47
Lsp1109I GCAGC 1 cut(s) 127
LweI GCATC 1 cut(s) 16
MboII GAAGA 1 cut(s) 46
MluCI AATT 1 cut(s) 114
MnlI CCTC 1 cut(s) 196
MvnI CGCG 1 cut(s) 154
MwoI GCNNNNNNNGC 3 cut(s) 50, 118, 140
NlaIII CATG 1 cut(s) 48
NspI RCATGY 1 cut(s) 48
PflMI CCANNNNNTGG 1 cut(s) 136
PkrI GCNGC 1 cut(s) 142
PsiI TTATAA 1 cut(s) 101
SatI GCNGC 1 cut(s) 141
SetI ASST 3 cut(s) 42, 60, 123
SfaNI GCATC 1 cut(s) 16
SgeI CNNG 7 cut(s) 57, 74, 118, 134, 143, 165, 175
Sse9I AATT 1 cut(s) 114
TasI AATT 1 cut(s) 114
TscAI CASTG 1 cut(s) 78
TseI GCWGC 1 cut(s) 140
TspDTI ATGAA 1 cut(s) 47
TspRI CASTG 1 cut(s) 78
Van91I CCANNNNNTGG 1 cut(s) 136
XceI RCATGY 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.