Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0018683

Physical Location & Seq

Genomic Coordinates Reverse (-)

23277023 .. 23279582

Gene Structure 2560 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00236070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGTATTCAGCCGCCCCTCTTCCACTGGCACATGCTCATGTGGCATCATCATCAGAGAAGGCGAAAAATGATGCGATGAAGAAGGCGGCATGTGTGGCTGAGCTTCTGGTCGAAGCAGTGAATGGTGGGGTGAAGGAGTTGTTTATAAACGAGAAGCGAATTGAGCTTGAAATCCAAGCATTGGCTGCCACCATTTCGCGCTTCATCAAGCAGACTGATAAGTGGTTATCAGTCGCACACATCTCAGAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005829 GO:0006810 GO:0007034 GO:0007275 GO:0008150 GO:0012505 GO:0016192 GO:0016197 GO:0022622 GO:0031082 GO:0031083 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045324 GO:0046907 GO:0048364 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0097708 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GCN5L1

Protein Analysis

84

Amino Acids

9.13

Weight (kDa)

6.28

Isoelectric Point (pI)

52.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GCN5L1	PF06320	13 - 80	4.9e-16	GCN5-like protein 1 (GCN5L1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018683)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002192.1_g000035
rosa_roxburghii	Rroxscaffold_1G00020400 Rroxscaffold_3G00236070
rosa_rugosa	Rorug05G0330000 Rorug07G0213200
rosa_samantha	Rh5BG406900 Rh5CG430700 Rh7BG346500 Rh7CG376700 Rh7DG353800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	146
AccB7I	CCANNNNNTGG	1 cut(s)	181
AccII	CGCG	1 cut(s)	199
AciI	CCGC	2 cut(s)	12, 86
AfiI	CCNNNNNNNGG	1 cut(s)	181
AgsI	TTSAA	1 cut(s)	170
AluBI	AGCT	2 cut(s)	103, 166
AluI	AGCT	2 cut(s)	103, 166
ApeKI	GCWGC	1 cut(s)	185
AspLEI	GCGC	1 cut(s)	201
AsuHPI	GGTGA	1 cut(s)	142
BbvI	GCAGC	1 cut(s)	172
BisI	GCNGC	3 cut(s)	12, 87, 186
BlpI	GCTNAGC	1 cut(s)	99
BlsI	GCNGC	3 cut(s)	13, 88, 187
BmsI	GCATC	2 cut(s)	53, 61
Bpu1102I	GCTNAGC	1 cut(s)	99
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
Bse1I	ACTGG	1 cut(s)	30
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseMII	CTCAG	1 cut(s)	90
BseNI	ACTGG	1 cut(s)	30
BseXI	GCAGC	1 cut(s)	172
Bsh1236I	CGCG	1 cut(s)	199
BslI	CCNNNNNNNGG	1 cut(s)	181
Bsp1720I	GCTNAGC	1 cut(s)	99
BspACI	CCGC	2 cut(s)	12, 86
BspCNI	CTCAG	1 cut(s)	91
BspFNI	CGCG	1 cut(s)	199
BsrI	ACTGG	1 cut(s)	30
Bst6I	CTCTTC	1 cut(s)	24
BstAPI	GCANNNNNTGC	1 cut(s)	185
BstDEI	CTNAG	2 cut(s)	99, 244
BstFNI	CGCG	1 cut(s)	199
BstHHI	GCGC	1 cut(s)	201
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 95, 163, 185
BstNSI	RCATGY	2 cut(s)	35, 93
BstUI	CGCG	1 cut(s)	199
BstV1I	GCAGC	1 cut(s)	172
BtgZI	GCGATG	1 cut(s)	89
BtsI	GCAGTG	1 cut(s)	123
BtsIMutI	CAGTG	2 cut(s)	23, 123
CfoI	GCGC	1 cut(s)	201
CviAII	CATG	3 cut(s)	32, 38, 90
CviJI	RGCY	5 cut(s)	11, 98, 103, 166, 185
CviKI_1	RGCY	5 cut(s)	11, 98, 103, 166, 185
DdeI	CTNAG	2 cut(s)	99, 244
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
FaeI	CATG	3 cut(s)	35, 41, 93
FaiI	YATR	4 cut(s)	33, 39, 91, 146
FatI	CATG	3 cut(s)	31, 37, 89
Fnu4HI	GCNGC	3 cut(s)	12, 87, 186
Fsp4HI	GCNGC	3 cut(s)	12, 87, 186
GlaI	GCGC	1 cut(s)	200
GluI	GCNGC	3 cut(s)	12, 87, 186
HhaI	GCGC	1 cut(s)	201
Hin1II	CATG	3 cut(s)	35, 41, 93
Hin6I	GCGC	1 cut(s)	199
HinP1I	GCGC	1 cut(s)	199
HphI	GGTGA	1 cut(s)	142
Hpy188I	TCNGA	2 cut(s)	55, 247
HpyAV	CCTTC	3 cut(s)	52, 76, 127
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 95, 163, 185
HpyF3I	CTNAG	2 cut(s)	99, 244
Hsp92II	CATG	3 cut(s)	35, 41, 93
HspAI	GCGC	1 cut(s)	199
LpnPI	CCDG	2 cut(s)	11, 92
Lsp1109I	GCAGC	1 cut(s)	172
LweI	GCATC	2 cut(s)	53, 61
MboII	GAAGA	2 cut(s)	11, 91
MluCI	AATT	1 cut(s)	159
MnlI	CCTC	2 cut(s)	27, 241
MslI	CAYNNNNRTG	1 cut(s)	36
MvnI	CGCG	1 cut(s)	199
MwoI	GCNNNNNNNGC	4 cut(s)	41, 95, 163, 185
NlaIII	CATG	3 cut(s)	35, 41, 93
NspI	RCATGY	2 cut(s)	35, 93
PflMI	CCANNNNNTGG	1 cut(s)	181
PkrI	GCNGC	3 cut(s)	13, 88, 187
PsiI	TTATAA	1 cut(s)	146
RseI	CAYNNNNRTG	1 cut(s)	36
SatI	GCNGC	3 cut(s)	12, 87, 186
SetI	ASST	2 cut(s)	105, 168
SfaNI	GCATC	2 cut(s)	53, 61
SmiMI	CAYNNNNRTG	1 cut(s)	36
Sse9I	AATT	1 cut(s)	159
SsiI	CCGC	2 cut(s)	12, 86
TaqI	TCGA	1 cut(s)	111
TasI	AATT	1 cut(s)	159
TauI	GCSGC	2 cut(s)	14, 89
TscAI	CASTG	2 cut(s)	30, 123
TseI	GCWGC	1 cut(s)	185
TspDTI	ATGAA	2 cut(s)	92, 193
TspRI	CASTG	2 cut(s)	30, 123
Van91I	CCANNNNNTGG	1 cut(s)	181
XceI	RCATGY	2 cut(s)	35, 93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.