Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0018683

Physical Location & Seq

Genomic Coordinates Reverse (-)

24683507 .. 24683922

Gene Structure 416 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00020400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGTATTCAGCCACCCCTCTTCCACTGGCACATGCTCATGTGGCATCATCATCCTCGCCCAAGACAAATCCAGGTGTTTTAGGAGCACAACCAGACCTCTGTTCGACTCCATGGACTCACCTAAGGTGGCATGTGGAGCTTTTGGTCGAAGCAATGAATGGTGGGGTGAAGGAGTTGTTTATAAACGAGAAGCGAATTGAGCTTGAAATCCAAGCATTGGCTGCCACCATTTCGCGCTTCATCAAGCAGACTGATAAGTGGTTATCAGTCGCCCACATCTCAGAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005829 GO:0006810 GO:0007034 GO:0007275 GO:0008150 GO:0012505 GO:0016192 GO:0016197 GO:0022622 GO:0031082 GO:0031083 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045324 GO:0046907 GO:0048364 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0097708 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GCN5L1

Protein Analysis

96

Amino Acids

10.62

Weight (kDa)

6.18

Isoelectric Point (pI)

52.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GCN5L1	PF06320	45 - 92	4.6e-11	GCN5-like protein 1 (GCN5L1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0018683)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002192.1_g000035
rosa_roxburghii	Rroxscaffold_1G00020400 Rroxscaffold_3G00236070
rosa_rugosa	Rorug05G0330000 Rorug07G0213200
rosa_samantha	Rh5BG406900 Rh5CG430700 Rh7BG346500 Rh7CG376700 Rh7DG353800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	182
AccB7I	CCANNNNNTGG	1 cut(s)	217
AccII	CGCG	1 cut(s)	235
AfiI	CCNNNNNNNGG	1 cut(s)	217
AgsI	TTSAA	1 cut(s)	206
AjnI	CCWGG	1 cut(s)	70
AluBI	AGCT	2 cut(s)	139, 202
AluI	AGCT	2 cut(s)	139, 202
Alw21I	GWGCWC	1 cut(s)	88
ApeKI	GCWGC	1 cut(s)	221
AspLEI	GCGC	1 cut(s)	237
AsuHPI	GGTGA	2 cut(s)	110, 178
AxyI	CCTNAGG	1 cut(s)	122
Bbv12I	GWGCWC	1 cut(s)	88
BbvI	GCAGC	1 cut(s)	208
BciT130I	CCWGG	1 cut(s)	72
BisI	GCNGC	1 cut(s)	222
BlsI	GCNGC	1 cut(s)	223
Bme1390I	CCNGG	1 cut(s)	72
BmrFI	CCNGG	1 cut(s)	72
BmsI	GCATC	1 cut(s)	53
BsaJI	CCNNGG	1 cut(s)	110
Bsc4I	CCNNNNNNNGG	1 cut(s)	217
Bse1I	ACTGG	1 cut(s)	30
Bse21I	CCTNAGG	1 cut(s)	122
Bse3DI	GCAATG	1 cut(s)	159
BseBI	CCWGG	1 cut(s)	72
BseDI	CCNNGG	1 cut(s)	110
BseGI	GGATG	1 cut(s)	50
BseLI	CCNNNNNNNGG	1 cut(s)	217
BseMI	GCAATG	1 cut(s)	159
BseNI	ACTGG	1 cut(s)	30
BseXI	GCAGC	1 cut(s)	208
Bsh1236I	CGCG	1 cut(s)	235
BsiHKAI	GWGCWC	1 cut(s)	88
BslI	CCNNNNNNNGG	1 cut(s)	217
Bsp1286I	GDGCHC	1 cut(s)	88
Bsp19I	CCATGG	1 cut(s)	110
BspFNI	CGCG	1 cut(s)	235
BsrDI	GCAATG	1 cut(s)	159
BsrI	ACTGG	1 cut(s)	30
BssECI	CCNNGG	1 cut(s)	110
BssT1I	CCWWGG	1 cut(s)	110
Bst2UI	CCWGG	1 cut(s)	72
Bst6I	CTCTTC	1 cut(s)	24
BstAPI	GCANNNNNTGC	1 cut(s)	221
BstDEI	CTNAG	2 cut(s)	122, 280
BstDSI	CCRYGG	1 cut(s)	110
BstF5I	GGATG	1 cut(s)	50
BstFNI	CGCG	1 cut(s)	235
BstHHI	GCGC	1 cut(s)	237
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 136, 199, 221
BstNI	CCWGG	1 cut(s)	72
BstNSI	RCATGY	2 cut(s)	35, 134
BstSCI	CCNGG	1 cut(s)	70
BstUI	CGCG	1 cut(s)	235
BstV1I	GCAGC	1 cut(s)	208
Bsu36I	CCTNAGG	1 cut(s)	122
BtgI	CCRYGG	1 cut(s)	110
BtsCI	GGATG	1 cut(s)	50
BtsIMutI	CAGTG	1 cut(s)	23
CfoI	GCGC	1 cut(s)	237
CviAII	CATG	4 cut(s)	32, 38, 111, 131
CviJI	RGCY	4 cut(s)	11, 139, 202, 221
CviKI_1	RGCY	4 cut(s)	11, 139, 202, 221
DdeI	CTNAG	2 cut(s)	122, 280
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
Eco130I	CCWWGG	1 cut(s)	110
Eco81I	CCTNAGG	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	70
EcoT14I	CCWWGG	1 cut(s)	110
ErhI	CCWWGG	1 cut(s)	110
FaeI	CATG	4 cut(s)	35, 41, 114, 134
FaiI	YATR	5 cut(s)	33, 39, 112, 132, 182
FatI	CATG	4 cut(s)	31, 37, 110, 130
Fnu4HI	GCNGC	1 cut(s)	222
FokI	GGATG	1 cut(s)	37
Fsp4HI	GCNGC	1 cut(s)	222
GlaI	GCGC	1 cut(s)	236
GluI	GCNGC	1 cut(s)	222
HhaI	GCGC	1 cut(s)	237
Hin1II	CATG	4 cut(s)	35, 41, 114, 134
Hin6I	GCGC	1 cut(s)	235
HinP1I	GCGC	1 cut(s)	235
HinfI	GANTC	2 cut(s)	106, 115
HphI	GGTGA	2 cut(s)	110, 178
Hpy188I	TCNGA	1 cut(s)	283
HpyAV	CCTTC	1 cut(s)	163
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 136, 199, 221
HpyF3I	CTNAG	2 cut(s)	122, 280
Hsp92II	CATG	4 cut(s)	35, 41, 114, 134
HspAI	GCGC	1 cut(s)	235
LmnI	GCTCC	2 cut(s)	83, 136
LpnPI	CCDG	4 cut(s)	11, 57, 84, 105
Lsp1109I	GCAGC	1 cut(s)	208
LweI	GCATC	1 cut(s)	53
MboII	GAAGA	1 cut(s)	11
MhlI	GDGCHC	1 cut(s)	88
MluCI	AATT	1 cut(s)	195
MlyI	GAGTC	2 cut(s)	100, 109
MnlI	CCTC	4 cut(s)	27, 64, 107, 277
MslI	CAYNNNNRTG	1 cut(s)	36
MspR9I	CCNGG	1 cut(s)	72
MvaI	CCWGG	1 cut(s)	72
MvnI	CGCG	1 cut(s)	235
MwoI	GCNNNNNNNGC	4 cut(s)	41, 136, 199, 221
NcoI	CCATGG	1 cut(s)	110
NlaIII	CATG	4 cut(s)	35, 41, 114, 134
NspI	RCATGY	2 cut(s)	35, 134
PflMI	CCANNNNNTGG	1 cut(s)	217
PkrI	GCNGC	1 cut(s)	223
PleI	GAGTC	2 cut(s)	100, 109
PpsI	GAGTC	2 cut(s)	100, 109
PsiI	TTATAA	1 cut(s)	182
Psp6I	CCWGG	1 cut(s)	70
PspGI	CCWGG	1 cut(s)	70
RseI	CAYNNNNRTG	1 cut(s)	36
SatI	GCNGC	1 cut(s)	222
SchI	GAGTC	2 cut(s)	100, 109
ScrFI	CCNGG	1 cut(s)	72
SduI	GDGCHC	1 cut(s)	88
SetI	ASST	6 cut(s)	76, 99, 123, 128, 141, 204
SfaNI	GCATC	1 cut(s)	53
SmiMI	CAYNNNNRTG	1 cut(s)	36
Sse9I	AATT	1 cut(s)	195
StyD4I	CCNGG	1 cut(s)	70
StyI	CCWWGG	1 cut(s)	110
TaqI	TCGA	2 cut(s)	104, 147
TasI	AATT	1 cut(s)	195
TscAI	CASTG	1 cut(s)	30
TseI	GCWGC	1 cut(s)	221
TspDTI	ATGAA	2 cut(s)	170, 229
TspRI	CASTG	1 cut(s)	30
Van91I	CCANNNNNTGG	1 cut(s)	217
XceI	RCATGY	2 cut(s)	35, 134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.