Rh5CG430700

Biogenesis of lysosome-related organelles complex 1 subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0018683
Physical Location & Seq
Forward (+)
59636572 .. 59636997
426 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG430700.1

Sequence Viewer

Length: 354 bp
ATGTATTCAGCTGCCCCTCTTCCACCGGCACATGCTCATGTGGCATCATCATCCTCGTCCAAGACAAATCCAGTTGTTTTAGGAGCACCACCATTCCTCTGTTCGACTCCATGGACTCACCGTCACCGGTCAGTGTACCAATATTCAATCTGGGAGAAGGCGAAAAATGATGCAATGAATAAGGTGGCATGTGTGGCTGAGCTTCTGGTCGAAGCAGTGAATGGTGGGGTGAAGGAGTTGTTTATAAACGAGAAGCGAATTGAGCTTGAAATCCAAGCATTGGCTGCCACCATTTCGCGCTTCATCAAGCAGACTGATAAGTGGTTATCAGTCGCCCACATCTCACAGGAATGA

Protein Analysis

117

Amino Acids

12.93

Weight (kDa)

8.62

Isoelectric Point (pI)

52.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GCN5L1 PF06320 40 - 113 4e-15 GCN5-like protein 1 (GCN5L1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 245
AccB7I CCANNNNNTGG 1 cut(s) 280
AccII CGCG 1 cut(s) 298
AfaI GTAC 1 cut(s) 137
AfiI CCNNNNNNNGG 1 cut(s) 280
AgeI ACCGGT 1 cut(s) 126
AgsI TTSAA 2 cut(s) 147, 269
AhdI GACNNNNNGTC 1 cut(s) 120
AluBI AGCT 3 cut(s) 11, 202, 265
AluI AGCT 3 cut(s) 11, 202, 265
Alw21I GWGCWC 1 cut(s) 88
ApeKI GCWGC 2 cut(s) 11, 284
AsiGI ACCGGT 1 cut(s) 126
AspLEI GCGC 1 cut(s) 300
AsuHPI GGTGA 3 cut(s) 110, 116, 241
Bbv12I GWGCWC 1 cut(s) 88
BbvI GCAGC 1 cut(s) 271
BisI GCNGC 2 cut(s) 12, 285
BlpI GCTNAGC 1 cut(s) 198
BlsI GCNGC 2 cut(s) 13, 286
BmeRI GACNNNNNGTC 1 cut(s) 120
BmsI GCATC 2 cut(s) 53, 160
Bpu1102I GCTNAGC 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 110
BsaWI WCCGGW 1 cut(s) 126
Bsc4I CCNNNNNNNGG 1 cut(s) 280
Bse118I RCCGGY 2 cut(s) 25, 126
Bse1I ACTGG 1 cut(s) 71
Bse3DI GCAATG 1 cut(s) 180
BseDI CCNNGG 1 cut(s) 110
BseGI GGATG 1 cut(s) 50
BseLI CCNNNNNNNGG 1 cut(s) 280
BseMI GCAATG 1 cut(s) 180
BseMII CTCAG 1 cut(s) 189
BseNI ACTGG 1 cut(s) 71
BseXI GCAGC 1 cut(s) 271
Bsh1236I CGCG 1 cut(s) 298
BshTI ACCGGT 1 cut(s) 126
BsiHKAI GWGCWC 1 cut(s) 88
BsiSI CCGG 2 cut(s) 26, 127
BslI CCNNNNNNNGG 1 cut(s) 280
Bsp1286I GDGCHC 1 cut(s) 88
Bsp1720I GCTNAGC 1 cut(s) 198
Bsp19I CCATGG 1 cut(s) 110
BspCNI CTCAG 1 cut(s) 190
BspFNI CGCG 1 cut(s) 298
BsrDI GCAATG 1 cut(s) 180
BsrFI RCCGGY 2 cut(s) 25, 126
BsrI ACTGG 1 cut(s) 71
BssAI RCCGGY 2 cut(s) 25, 126
BssECI CCNNGG 1 cut(s) 110
BssT1I CCWWGG 1 cut(s) 110
Bst4CI ACNGT 1 cut(s) 122
Bst6I CTCTTC 1 cut(s) 24
BstAPI GCANNNNNTGC 1 cut(s) 284
BstDEI CTNAG 1 cut(s) 198
BstDSI CCRYGG 1 cut(s) 110
BstF5I GGATG 1 cut(s) 50
BstFNI CGCG 1 cut(s) 298
BstHHI GCGC 1 cut(s) 300
BstMWI GCNNNNNNNGC 4 cut(s) 41, 194, 262, 284
BstNSI RCATGY 2 cut(s) 35, 192
BstUI CGCG 1 cut(s) 298
BstV1I GCAGC 1 cut(s) 271
BtgI CCRYGG 1 cut(s) 110
BtsCI GGATG 1 cut(s) 50
BtsI GCAGTG 1 cut(s) 222
BtsIMutI CAGTG 2 cut(s) 138, 222
CfoI GCGC 1 cut(s) 300
Cfr10I RCCGGY 2 cut(s) 25, 126
Csp6I GTAC 1 cut(s) 136
CspAI ACCGGT 1 cut(s) 126
CviAII CATG 4 cut(s) 32, 38, 111, 189
CviJI RGCY 5 cut(s) 11, 197, 202, 265, 284
CviKI_1 RGCY 5 cut(s) 11, 197, 202, 265, 284
CviQI GTAC 1 cut(s) 136
DdeI CTNAG 1 cut(s) 198
DriI GACNNNNNGTC 1 cut(s) 120
Eam1104I CTCTTC 1 cut(s) 24
Eam1105I GACNNNNNGTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 24
Eco130I CCWWGG 1 cut(s) 110
EcoT14I CCWWGG 1 cut(s) 110
ErhI CCWWGG 1 cut(s) 110
FaeI CATG 4 cut(s) 35, 41, 114, 192
FaiI YATR 5 cut(s) 33, 39, 112, 190, 245
FatI CATG 4 cut(s) 31, 37, 110, 188
Fnu4HI GCNGC 2 cut(s) 12, 285
FokI GGATG 1 cut(s) 37
Fsp4HI GCNGC 2 cut(s) 12, 285
GlaI GCGC 1 cut(s) 299
GluI GCNGC 2 cut(s) 12, 285
HapII CCGG 2 cut(s) 26, 127
HhaI GCGC 1 cut(s) 300
Hin1II CATG 4 cut(s) 35, 41, 114, 192
Hin6I GCGC 1 cut(s) 298
HinP1I GCGC 1 cut(s) 298
HinfI GANTC 2 cut(s) 106, 115
HpaII CCGG 2 cut(s) 26, 127
HphI GGTGA 3 cut(s) 110, 116, 241
Hpy166II GTNNAC 1 cut(s) 136
Hpy8I GTNNAC 1 cut(s) 136
HpyAV CCTTC 2 cut(s) 151, 226
HpyCH4III ACNGT 1 cut(s) 122
HpyCH4V TGCA 1 cut(s) 173
HpyF10VI GCNNNNNNNGC 4 cut(s) 41, 194, 262, 284
HpyF3I CTNAG 1 cut(s) 198
Hsp92II CATG 4 cut(s) 35, 41, 114, 192
HspAI GCGC 1 cut(s) 298
LmnI GCTCC 1 cut(s) 83
LpnPI CCDG 6 cut(s) 39, 84, 136, 140, 191, 332
Lsp1109I GCAGC 1 cut(s) 271
LweI GCATC 2 cut(s) 53, 160
MaeIII GTNAC 1 cut(s) 122
MboII GAAGA 1 cut(s) 11
MhlI GDGCHC 1 cut(s) 88
MluCI AATT 1 cut(s) 258
MlyI GAGTC 2 cut(s) 100, 109
MnlI CCTC 3 cut(s) 27, 64, 107
MslI CAYNNNNRTG 2 cut(s) 36, 349
MspA1I CMGCKG 1 cut(s) 11
MspI CCGG 2 cut(s) 26, 127
MvnI CGCG 1 cut(s) 298
MwoI GCNNNNNNNGC 4 cut(s) 41, 194, 262, 284
NcoI CCATGG 1 cut(s) 110
NlaIII CATG 4 cut(s) 35, 41, 114, 192
NmuCI GTSAC 1 cut(s) 122
NspI RCATGY 2 cut(s) 35, 192
PflMI CCANNNNNTGG 1 cut(s) 280
PinAI ACCGGT 1 cut(s) 126
PkrI GCNGC 2 cut(s) 13, 286
PleI GAGTC 2 cut(s) 100, 109
PpsI GAGTC 2 cut(s) 100, 109
PsiI TTATAA 1 cut(s) 245
PvuII CAGCTG 1 cut(s) 11
RsaI GTAC 1 cut(s) 137
RsaNI GTAC 1 cut(s) 136
RseI CAYNNNNRTG 2 cut(s) 36, 349
SatI GCNGC 2 cut(s) 12, 285
SchI GAGTC 2 cut(s) 100, 109
SduI GDGCHC 1 cut(s) 88
SetI ASST 4 cut(s) 13, 186, 204, 267
SfaNI GCATC 2 cut(s) 53, 160
SmiMI CAYNNNNRTG 2 cut(s) 36, 349
Sse9I AATT 1 cut(s) 258
SspI AATATT 1 cut(s) 143
StyI CCWWGG 1 cut(s) 110
TaaI ACNGT 1 cut(s) 122
TaqI TCGA 2 cut(s) 104, 210
TasI AATT 1 cut(s) 258
TscAI CASTG 2 cut(s) 138, 222
TseFI GTSAC 1 cut(s) 122
TseI GCWGC 2 cut(s) 11, 284
Tsp45I GTSAC 1 cut(s) 122
TspDTI ATGAA 2 cut(s) 191, 292
TspRI CASTG 2 cut(s) 138, 222
Van91I CCANNNNNTGG 1 cut(s) 280
XceI RCATGY 2 cut(s) 35, 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.