Rh7CG376700

Biogenesis of lysosome-related organelles complex 1 subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0018683
Physical Location & Seq
Forward (+)
47374670 .. 47374876
207 bp
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UTR
Exon/CDS
Intron
Rh7CG376700.1

Sequence Viewer

Length: 207 bp
ATGGCAGAGAAGGTGAAAAATGATGCAATGAAGAAGGTGGCATGTGTGGCTGAGCTTCTGGTTGAAGCAGTGAATGGTGGGGTGAAGGAGTTGTTTATAAACGAGAAGCGAATTGAGCTCGAAATCCAAGCATTGCCTGTCACCATTTCGCGCTTCATCAAGCAGACTGATAAGTGGTTATCAGTCGCACACATCTCAGAGGAATGA

Protein Analysis

68

Amino Acids

7.65

Weight (kDa)

5.82

Isoelectric Point (pI)

50.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GCN5L1 PF06320 2 - 64 1.7e-14 GCN5-like protein 1 (GCN5L1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 98
AccII CGCG 1 cut(s) 151
AgsI TTSAA 1 cut(s) 65
AluBI AGCT 2 cut(s) 55, 118
AluI AGCT 2 cut(s) 55, 118
Alw21I GWGCWC 1 cut(s) 120
AspLEI GCGC 1 cut(s) 153
AsuHPI GGTGA 3 cut(s) 25, 94, 133
BanII GRGCYC 1 cut(s) 120
Bbv12I GWGCWC 1 cut(s) 120
BlpI GCTNAGC 1 cut(s) 51
BmsI GCATC 1 cut(s) 13
Bpu1102I GCTNAGC 1 cut(s) 51
Bse3DI GCAATG 2 cut(s) 33, 131
BseMI GCAATG 2 cut(s) 33, 131
BseMII CTCAG 1 cut(s) 42
Bsh1236I CGCG 1 cut(s) 151
BsiHKAI GWGCWC 1 cut(s) 120
Bsp1286I GDGCHC 1 cut(s) 120
Bsp1720I GCTNAGC 1 cut(s) 51
BspCNI CTCAG 1 cut(s) 43
BspFNI CGCG 1 cut(s) 151
BsrDI GCAATG 2 cut(s) 33, 131
BstDEI CTNAG 2 cut(s) 51, 196
BstFNI CGCG 1 cut(s) 151
BstHHI GCGC 1 cut(s) 153
BstMWI GCNNNNNNNGC 2 cut(s) 47, 115
BstNSI RCATGY 1 cut(s) 45
BstUI CGCG 1 cut(s) 151
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 75
CfoI GCGC 1 cut(s) 153
CviAII CATG 1 cut(s) 42
CviJI RGCY 3 cut(s) 50, 55, 118
CviKI_1 RGCY 3 cut(s) 50, 55, 118
DdeI CTNAG 2 cut(s) 51, 196
Ecl136II GAGCTC 1 cut(s) 118
Eco24I GRGCYC 1 cut(s) 120
Eco53kI GAGCTC 1 cut(s) 118
EcoICRI GAGCTC 1 cut(s) 118
EcoT38I GRGCYC 1 cut(s) 120
FaeI CATG 1 cut(s) 45
FaiI YATR 2 cut(s) 43, 98
FatI CATG 1 cut(s) 41
FriOI GRGCYC 1 cut(s) 120
GlaI GCGC 1 cut(s) 152
HhaI GCGC 1 cut(s) 153
Hin1II CATG 1 cut(s) 45
Hin6I GCGC 1 cut(s) 151
HinP1I GCGC 1 cut(s) 151
HphI GGTGA 3 cut(s) 25, 94, 133
Hpy188I TCNGA 1 cut(s) 199
HpyAV CCTTC 3 cut(s) 4, 28, 79
HpyCH4V TGCA 1 cut(s) 26
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 115
HpyF3I CTNAG 2 cut(s) 51, 196
Hsp92II CATG 1 cut(s) 45
HspAI GCGC 1 cut(s) 151
LpnPI CCDG 2 cut(s) 44, 150
LweI GCATC 1 cut(s) 13
MaeIII GTNAC 1 cut(s) 139
MboII GAAGA 1 cut(s) 43
MhlI GDGCHC 1 cut(s) 120
MluCI AATT 1 cut(s) 111
MnlI CCTC 1 cut(s) 193
MvnI CGCG 1 cut(s) 151
MwoI GCNNNNNNNGC 2 cut(s) 47, 115
NlaIII CATG 1 cut(s) 45
NmuCI GTSAC 1 cut(s) 139
NspI RCATGY 1 cut(s) 45
PsiI TTATAA 1 cut(s) 98
Psp124BI GAGCTC 1 cut(s) 120
SacI GAGCTC 1 cut(s) 120
SduI GDGCHC 1 cut(s) 120
SetI ASST 4 cut(s) 15, 39, 57, 120
SfaNI GCATC 1 cut(s) 13
SgeI CNNG 8 cut(s) 54, 71, 115, 131, 140, 149, 162, 172
Sse9I AATT 1 cut(s) 111
SstI GAGCTC 1 cut(s) 120
TaqI TCGA 1 cut(s) 120
TasI AATT 1 cut(s) 111
TscAI CASTG 1 cut(s) 75
TseFI GTSAC 1 cut(s) 139
Tsp45I GTSAC 1 cut(s) 139
TspDTI ATGAA 2 cut(s) 44, 145
TspRI CASTG 1 cut(s) 75
XceI RCATGY 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.