Rmu_sc0002370.1_g000019

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002370.1
OG0018536
Physical Location & Seq
Reverse (-)
45695 .. 47671
1977 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 510 bp
atgtcactctcccaaaccaatctcatctctccgagtgtgatgcgaatacacatatgcaagaccgaattgttcgcgcgcctccatttttttcccacattggatgcgatttcagtgttttatgatgaggacccaaatttgtggatgggtttctgggtttcctcaatcatcataagcctcccgagccacggatccgacgagttcaggcccttcgttcgacctctcctcgagtttaaattctggttcgttagcctaaacgttcgttgtcggtttcatagagcagcgagtacctcccgctccttgcagtggaaggataacagttcccctgctaaggtgattactaaagaatctcttttggtggcacagaaggaggatttgcgtagagtgatggacttgctatttctgagggacttggttatattccgcctgatgtcccagcctgatgtccatggctactacgcactccattgggctgatctcgcccactacataattcagcatggcggggactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 DHHC

Protein Analysis

169

Amino Acids

19.74

Weight (kDa)

7.88

Isoelectric Point (pI)

57.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rer1 PF03248 58 - 86 1.9e-06 Rer1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018536)

Species Orthologous Gene IDs
pyrus_communis pycom10g06550
rosa_chinensis RchiOBHm_Chr1g0314591
rosa_laevigata RLG00000022053 RLG00000032821
rosa_multiflora Rmu_sc0002370.1_g000019
rosa_samantha Rh1AG011500 Rh2AG552600 Rh2DG464900
rosa_wichuraiana Rw0G018450 Rw7G037140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 294
AccII CGCG 2 cut(s) 74, 76
AciI CCGC 3 cut(s) 292, 421, 501
AclI AACGTT 1 cut(s) 255
AclWI GGATC 2 cut(s) 183, 196
AcsI RAATTY 2 cut(s) 133, 233
AfaI GTAC 1 cut(s) 286
AfiI CCNNNNNNNGG 3 cut(s) 185, 303, 328
AlwI GGATC 2 cut(s) 183, 196
Ama87I CYCGRG 2 cut(s) 178, 224
AoxI GGCC 1 cut(s) 203
ApeKI GCWGC 1 cut(s) 278
ApoI RAATTY 2 cut(s) 133, 233
AspLEI GCGC 2 cut(s) 76, 78
AspS9I GGNCC 2 cut(s) 127, 204
AsuHPI GGTGA 1 cut(s) 343
AvaI CYCGRG 2 cut(s) 178, 224
AvaII GGWCC 1 cut(s) 127
BamHI GGATCC 1 cut(s) 188
BbvI GCAGC 1 cut(s) 290
BccI CCATC 2 cut(s) 136, 379
BcgI CGANNNNNNTGC 2 cut(s) 22, 56
BisI GCNGC 1 cut(s) 279
BlsI GCNGC 1 cut(s) 280
Bme18I GGWCC 1 cut(s) 127
BmeT110I CYCGRG 2 cut(s) 178, 224
BmgT120I GGNCC 2 cut(s) 127, 204
BmiI GGNNCC 2 cut(s) 129, 190
BmsI GCATC 2 cut(s) 30, 91
Bpu10I CCTNAGC 1 cut(s) 327
BsaJI CCNNGG 2 cut(s) 184, 445
Bsc4I CCNNNNNNNGG 3 cut(s) 185, 303, 328
BseDI CCNNGG 2 cut(s) 184, 445
BseGI GGATG 2 cut(s) 106, 147
BseLI CCNNNNNNNGG 3 cut(s) 185, 303, 328
BseMII CTCAG 1 cut(s) 392
BsePI GCGCGC 1 cut(s) 74
BseRI GAGGAG 1 cut(s) 212
BseXI GCAGC 1 cut(s) 290
BseYI CCCAGC 1 cut(s) 432
Bsh1236I CGCG 2 cut(s) 74, 76
BshFI GGCC 1 cut(s) 205
BsiHKCI CYCGRG 2 cut(s) 178, 224
BslFI GGGAC 2 cut(s) 415, 419
BslI CCNNNNNNNGG 3 cut(s) 185, 303, 328
BsmFI GGGAC 2 cut(s) 415, 419
BsnI GGCC 1 cut(s) 205
BsoBI CYCGRG 2 cut(s) 178, 224
Bsp143I GATC 2 cut(s) 188, 472
Bsp19I CCATGG 1 cut(s) 445
BspACI CCGC 3 cut(s) 292, 421, 501
BspANI GGCC 1 cut(s) 205
BspCNI CTCAG 1 cut(s) 393
BspFNI CGCG 2 cut(s) 74, 76
BspLI GGNNCC 2 cut(s) 129, 190
BspPI GGATC 2 cut(s) 183, 196
BsrBI CCGCTC 1 cut(s) 294
BssECI CCNNGG 2 cut(s) 184, 445
BssHII GCGCGC 1 cut(s) 74
BssMI GATC 2 cut(s) 188, 472
BssT1I CCWWGG 1 cut(s) 445
Bst4CI ACNGT 1 cut(s) 317
BstC8I GCNNGC 1 cut(s) 76
BstDEI CTNAG 2 cut(s) 327, 401
BstDSI CCRYGG 2 cut(s) 184, 445
BstF5I GGATG 2 cut(s) 106, 147
BstFNI CGCG 2 cut(s) 74, 76
BstHHI GCGC 2 cut(s) 76, 78
BstKTI GATC 2 cut(s) 191, 475
BstMBI GATC 2 cut(s) 188, 472
BstMWI GCNNNNNNNGC 2 cut(s) 180, 476
BstUI CGCG 2 cut(s) 74, 76
BstV1I GCAGC 1 cut(s) 290
BstX2I RGATCY 1 cut(s) 188
BstXI CCANNNNNNTGG 1 cut(s) 138
BstYI RGATCY 1 cut(s) 188
BsuRI GGCC 1 cut(s) 205
BtgI CCRYGG 2 cut(s) 184, 445
BtsCI GGATG 2 cut(s) 106, 147
BtsI GCAGTG 1 cut(s) 308
BtsIMutI CAGTG 2 cut(s) 117, 308
Cac8I GCNNGC 1 cut(s) 76
CfoI GCGC 2 cut(s) 76, 78
Cfr13I GGNCC 2 cut(s) 127, 204
Csp6I GTAC 1 cut(s) 285
CviAII CATG 2 cut(s) 446, 497
CviJI RGCY 7 cut(s) 174, 183, 205, 249, 436, 450, 470
CviKI_1 RGCY 7 cut(s) 174, 183, 205, 249, 436, 450, 470
CviQI GTAC 1 cut(s) 285
DdeI CTNAG 2 cut(s) 327, 401
DpnI GATC 2 cut(s) 190, 474
DpnII GATC 2 cut(s) 188, 472
DraI TTTAAA 1 cut(s) 232
EciI GGCGGA 1 cut(s) 410
Eco130I CCWWGG 1 cut(s) 445
Eco47I GGWCC 1 cut(s) 127
Eco88I CYCGRG 2 cut(s) 178, 224
EcoO109I RGGNCCY 2 cut(s) 127, 204
EcoT14I CCWWGG 1 cut(s) 445
ErhI CCWWGG 1 cut(s) 445
FaeI CATG 2 cut(s) 449, 500
FaiI YATR 9 cut(s) 53, 55, 120, 170, 273, 416, 447, 488, 498
FalI AAGNNNNNCTT 2 cut(s) 333, 365
FaqI GGGAC 2 cut(s) 415, 419
FatI CATG 2 cut(s) 445, 496
FauI CCCGC 2 cut(s) 299, 494
FauNDI CATATG 1 cut(s) 53
Fnu4HI GCNGC 1 cut(s) 279
FokI GGATG 2 cut(s) 113, 154
Fsp4HI GCNGC 1 cut(s) 279
GlaI GCGC 2 cut(s) 75, 77
GluI GCNGC 1 cut(s) 279
GsaI CCCAGC 1 cut(s) 436
HaeIII GGCC 1 cut(s) 205
HhaI GCGC 2 cut(s) 76, 78
Hin1II CATG 2 cut(s) 449, 500
Hin6I GCGC 2 cut(s) 74, 76
HinP1I GCGC 2 cut(s) 74, 76
HinfI GANTC 1 cut(s) 344
HphI GGTGA 1 cut(s) 343
Hpy188I TCNGA 3 cut(s) 33, 193, 402
Hpy188III TCNNGA 1 cut(s) 178
Hpy99I CGWCG 1 cut(s) 197
HpyAV CCTTC 3 cut(s) 217, 301, 358
HpyCH4III ACNGT 1 cut(s) 317
HpyCH4IV ACGT 1 cut(s) 255
HpyCH4V TGCA 2 cut(s) 57, 301
HpyF10VI GCNNNNNNNGC 2 cut(s) 180, 476
HpyF3I CTNAG 2 cut(s) 327, 401
HpySE526I ACGT 1 cut(s) 255
Hsp92II CATG 2 cut(s) 449, 500
HspAI GCGC 2 cut(s) 74, 76
Kzo9I GATC 2 cut(s) 188, 472
LmnI GCTCC 1 cut(s) 299
LpnPI CCDG 7 cut(s) 136, 187, 223, 336, 437, 446, 450
Lsp1109I GCAGC 1 cut(s) 290
LweI GCATC 2 cut(s) 30, 91
MaeII ACGT 1 cut(s) 255
MaeIII GTNAC 1 cut(s) 3
MalI GATC 2 cut(s) 190, 474
MbiI CCGCTC 1 cut(s) 294
MboI GATC 2 cut(s) 188, 472
MflI RGATCY 1 cut(s) 188
MluCI AATT 4 cut(s) 65, 133, 233, 489
MmeI TCCRAC 1 cut(s) 216
MnlI CCTC 9 cut(s) 89, 118, 169, 185, 228, 233, 298, 361, 396
MseI TTAA 1 cut(s) 231
MvnI CGCG 2 cut(s) 74, 76
MwoI GCNNNNNNNGC 2 cut(s) 180, 476
NcoI CCATGG 1 cut(s) 445
NdeI CATATG 1 cut(s) 53
NdeII GATC 2 cut(s) 188, 472
NlaIII CATG 2 cut(s) 449, 500
NlaIV GGNNCC 2 cut(s) 129, 190
NmuCI GTSAC 1 cut(s) 3
PaeR7I CTCGAG 1 cut(s) 224
PauI GCGCGC 1 cut(s) 74
PcsI WCGNNNNNNNCGW 1 cut(s) 192
PfeI GAWTC 1 cut(s) 344
PkrI GCNGC 1 cut(s) 280
PpuMI RGGWCCY 1 cut(s) 127
Psp1406I AACGTT 1 cut(s) 255
Psp5II RGGWCCY 1 cut(s) 127
PspFI CCCAGC 1 cut(s) 432
PspN4I GGNNCC 2 cut(s) 129, 190
PspPI GGNCC 2 cut(s) 127, 204
PspPPI RGGWCCY 1 cut(s) 127
PspXI VCTCGAGB 1 cut(s) 224
PsuI RGATCY 1 cut(s) 188
PteI GCGCGC 1 cut(s) 74
RsaI GTAC 1 cut(s) 286
RsaNI GTAC 1 cut(s) 285
SaqAI TTAA 1 cut(s) 231
SatI GCNGC 1 cut(s) 279
Sau3AI GATC 2 cut(s) 188, 472
Sau96I GGNCC 2 cut(s) 127, 204
SetI ASST 4 cut(s) 220, 258, 290, 333
SfaNI GCATC 2 cut(s) 30, 91
Sfr274I CTCGAG 1 cut(s) 224
SinI GGWCC 1 cut(s) 127
SlaI CTCGAG 1 cut(s) 224
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
Sse9I AATT 4 cut(s) 65, 133, 233, 489
SsiI CCGC 3 cut(s) 292, 421, 501
StyI CCWWGG 1 cut(s) 445
TaaI ACNGT 1 cut(s) 317
TaiI ACGT 1 cut(s) 258
TaqI TCGA 2 cut(s) 214, 225
TaqII GACCGA 1 cut(s) 77
TasI AATT 4 cut(s) 65, 133, 233, 489
TfiI GAWTC 1 cut(s) 344
Tru1I TTAA 1 cut(s) 231
Tru9I TTAA 1 cut(s) 231
TscAI CASTG 2 cut(s) 117, 308
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 1 cut(s) 278
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 1 cut(s) 260
TspGWI ACGGA 1 cut(s) 201
TspRI CASTG 2 cut(s) 117, 308
VpaK11BI GGWCC 1 cut(s) 127
XapI RAATTY 2 cut(s) 133, 233
XhoI CTCGAG 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.