Rmu_sc0002527.1_g000003

RNA-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002527.1
OG0015504
Physical Location & Seq
Forward (+)
19118 .. 23038
3921 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 798 bp
atgtgggcagctccagtctcttttccatcgtacaactatggaaaacccattaacactcttcaatcttctgggtcaaatcgtagggtgcccaagtctttgaggctcagagcttccttctacgactatcctctcgcaagcagaatcatggtcaaaaatataccatattccaccagtgaaaatagtttgcagcagaagttttcaaatttcggagagatagctgaagttaaactagtgaaggatgaaacttcaaagaggtctaaggggtttgcatttattcaatataccagtcaagatgatgcaatgcttgccctggaaaacatggaccaccagacttttgatggcagggtcatctatgtagagcttgcaaaacctggtaaagatgcttatgcaggatacccaaaaacatctggacccccaaagaagcagtatatgcagcagcaagaggaagttacagactgctgtcgttatgactactcgtcgatgacacttttcttccaaatacttgaatgggtttctcatctctcttccctaaaatatctcaatcttggaggactaaaccttggcagcagcgttggaacacttgatgattcatctatttacaagggcaatccatcactttgtggggttcctcttttaaccaagtgcccaggagacgacacacctatagcacaaactttcctggagaagactaaagatgagattgataacggaaagcttggtttctatgttagcatcattctcgggtttgtcataggattttggggtgtttgtggcacgttactcataaagaagtcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

265

Amino Acids

29.57

Weight (kDa)

8.44

Isoelectric Point (pI)

41.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 48 - 117 2.9e-21 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015504)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G20030
fragaria_vesca FvH4_3g12730
malus_domestica MD10G1228700.v1.1
prunus_persica Prupe.4G116100_v2.0.a1
pyrus_communis pycom10g19220
rosa_chinensis RchiOBHm_Chr5g0020731
rosa_laevigata RLG00000032556
rosa_multiflora Rmu_sc0002527.1_g000003
rosa_roxburghii Rroxscaffold_1G00057570 Rroxscaffold_1G00057580
rosa_rugosa Rorug05G0062600
rosa_samantha Rh5AG152400 Rh5BG152100 Rh5CG163600 Rh5DG151600
rosa_wichuraiana Rw5G013510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 85
AcsI RAATTY 1 cut(s) 202
AcuI CTGAAG 1 cut(s) 240
AdeI CACNNNGTG 1 cut(s) 620
AfaI GTAC 1 cut(s) 32
AgsI TTSAA 5 cut(s) 62, 201, 249, 278, 506
AhdI GACNNNNNGTC 1 cut(s) 475
AhlI ACTAGT 1 cut(s) 229
AjnI CCWGG 4 cut(s) 309, 370, 646, 678
AluBI AGCT 5 cut(s) 11, 110, 218, 361, 715
AluI AGCT 5 cut(s) 11, 110, 218, 361, 715
Alw26I GTCTC 2 cut(s) 22, 645
Ama87I CYCGRG 1 cut(s) 740
ApeKI GCWGC 6 cut(s) 8, 187, 433, 436, 564, 567
ApoI RAATTY 1 cut(s) 202
AspS9I GGNCC 2 cut(s) 322, 410
AvaI CYCGRG 1 cut(s) 740
AvaII GGWCC 2 cut(s) 322, 410
BaeGI GKGCMC 2 cut(s) 90, 647
BanI GGYRCC 1 cut(s) 85
BbsI GAAGAC 1 cut(s) 692
BbvI GCAGC 6 cut(s) 20, 199, 445, 448, 576, 579
BccI CCATC 3 cut(s) 34, 332, 619
BcgI CGANNNNNNTGC 2 cut(s) 721, 755
BciT130I CCWGG 4 cut(s) 311, 372, 648, 680
BciVI GTATCC 1 cut(s) 386
BcoDI GTCTC 2 cut(s) 22, 645
BcuI ACTAGT 1 cut(s) 229
BfaI CTAG 1 cut(s) 230
BfmI CTRYAG 1 cut(s) 663
BfuI GTATCC 1 cut(s) 386
BisI GCNGC 6 cut(s) 9, 188, 434, 437, 565, 568
BlsI GCNGC 6 cut(s) 10, 189, 435, 438, 566, 569
Bme1390I CCNGG 4 cut(s) 311, 372, 648, 680
Bme18I GGWCC 2 cut(s) 322, 410
BmeRI GACNNNNNGTC 1 cut(s) 475
BmeT110I CYCGRG 1 cut(s) 740
BmgT120I GGNCC 2 cut(s) 322, 410
BmiI GGNNCC 3 cut(s) 87, 412, 627
BmrFI CCNGG 4 cut(s) 311, 372, 648, 680
BmsI GCATC 3 cut(s) 286, 370, 741
BoxI GACNNNNGTC 1 cut(s) 459
BpiI GAAGAC 1 cut(s) 692
BpmI CTGGAG 1 cut(s) 701
BsaJI CCNNGG 3 cut(s) 309, 559, 646
Bse1I ACTGG 3 cut(s) 14, 171, 285
Bse3DI GCAATG 1 cut(s) 306
BseBI CCWGG 4 cut(s) 311, 372, 648, 680
BseDI CCNNGG 3 cut(s) 309, 559, 646
BseGI GGATG 1 cut(s) 244
BseMI GCAATG 1 cut(s) 306
BseMII CTCAG 1 cut(s) 118
BseNI ACTGG 3 cut(s) 14, 171, 285
BseSI GKGCMC 2 cut(s) 90, 647
BseXI GCAGC 6 cut(s) 20, 199, 445, 448, 576, 579
BshNI GGYRCC 1 cut(s) 85
BsiHKCI CYCGRG 1 cut(s) 740
BsmAI GTCTC 2 cut(s) 22, 645
BsmBI CGTCTC 1 cut(s) 645
BsoBI CYCGRG 1 cut(s) 740
Bsp1286I GDGCHC 2 cut(s) 90, 647
BspCNI CTCAG 1 cut(s) 117
BspHI TCATGA 1 cut(s) 794
BspLI GGNNCC 3 cut(s) 87, 412, 627
BspT107I GGYRCC 1 cut(s) 85
BsrDI GCAATG 1 cut(s) 306
BsrI ACTGG 3 cut(s) 14, 171, 285
BssECI CCNNGG 3 cut(s) 309, 559, 646
BssT1I CCWWGG 1 cut(s) 559
Bst2UI CCWGG 4 cut(s) 311, 372, 648, 680
Bst6I CTCTTC 2 cut(s) 63, 529
BstAPI GCANNNNNTGC 2 cut(s) 305, 430
BstC8I GCNNGC 3 cut(s) 136, 306, 363
BstDEI CTNAG 2 cut(s) 104, 258
BstF5I GGATG 1 cut(s) 244
BstMAI GTCTC 2 cut(s) 22, 645
BstMWI GCNNNNNNNGC 2 cut(s) 305, 430
BstNI CCWGG 4 cut(s) 311, 372, 648, 680
BstPAI GACNNNNGTC 1 cut(s) 459
BstSCI CCNGG 4 cut(s) 309, 370, 646, 678
BstSFI CTRYAG 1 cut(s) 663
BstSLI GKGCMC 2 cut(s) 90, 647
BstV1I GCAGC 6 cut(s) 20, 199, 445, 448, 576, 579
BstV2I GAAGAC 1 cut(s) 692
BsuI GTATCC 1 cut(s) 386
BtsCI GGATG 1 cut(s) 244
BtsIMutI CAGTG 1 cut(s) 178
Cac8I GCNNGC 3 cut(s) 136, 306, 363
CciI TCATGA 1 cut(s) 794
Cfr13I GGNCC 2 cut(s) 322, 410
CsiI ACCWGGT 1 cut(s) 370
Csp6I GTAC 1 cut(s) 31
CviAII CATG 3 cut(s) 145, 319, 795
CviJI RGCY 6 cut(s) 11, 103, 110, 218, 361, 715
CviKI_1 RGCY 6 cut(s) 11, 103, 110, 218, 361, 715
CviQI GTAC 1 cut(s) 31
DdeI CTNAG 2 cut(s) 104, 258
DraIII CACNNNGTG 1 cut(s) 620
DriI GACNNNNNGTC 1 cut(s) 475
Eam1104I CTCTTC 2 cut(s) 63, 529
Eam1105I GACNNNNNGTC 1 cut(s) 475
EarI CTCTTC 2 cut(s) 63, 529
Eco130I CCWWGG 1 cut(s) 559
Eco47I GGWCC 2 cut(s) 322, 410
Eco57I CTGAAG 1 cut(s) 240
Eco88I CYCGRG 1 cut(s) 740
EcoRII CCWGG 4 cut(s) 309, 370, 646, 678
EcoT14I CCWWGG 1 cut(s) 559
ErhI CCWWGG 1 cut(s) 559
Esp3I CGTCTC 1 cut(s) 645
FaeI CATG 3 cut(s) 148, 322, 798
FatI CATG 3 cut(s) 144, 318, 794
Fnu4HI GCNGC 6 cut(s) 9, 188, 434, 437, 565, 568
FokI GGATG 1 cut(s) 251
Fsp4HI GCNGC 6 cut(s) 9, 188, 434, 437, 565, 568
FspBI CTAG 1 cut(s) 230
GluI GCNGC 6 cut(s) 9, 188, 434, 437, 565, 568
GsuI CTGGAG 1 cut(s) 701
Hin1II CATG 3 cut(s) 148, 322, 798
HindIII AAGCTT 1 cut(s) 713
HinfI GANTC 2 cut(s) 141, 587
Hpy188I TCNGA 2 cut(s) 107, 209
Hpy188III TCNNGA 3 cut(s) 290, 408, 795
Hpy99I CGWCG 1 cut(s) 481
HpyAV CCTTC 2 cut(s) 124, 229
HpyCH4IV ACGT 1 cut(s) 776
HpyCH4V TGCA 6 cut(s) 187, 269, 299, 365, 389, 433
HpyF10VI GCNNNNNNNGC 2 cut(s) 305, 430
HpyF3I CTNAG 2 cut(s) 104, 258
HpySE526I ACGT 1 cut(s) 776
Hsp92II CATG 3 cut(s) 148, 322, 798
LmnI GCTCC 1 cut(s) 16
Lsp1109I GCAGC 6 cut(s) 20, 199, 445, 448, 576, 579
LweI GCATC 3 cut(s) 286, 370, 741
MabI ACCWGGT 1 cut(s) 370
MaeI CTAG 1 cut(s) 230
MaeII ACGT 1 cut(s) 776
MaeIII GTNAC 2 cut(s) 448, 777
MboII GAAGA 5 cut(s) 50, 57, 484, 516, 697
MhlI GDGCHC 2 cut(s) 90, 647
MluCI AATT 1 cut(s) 202
MmeI TCCRAC 1 cut(s) 553
MnlI CCTC 6 cut(s) 93, 138, 246, 436, 542, 639
MseI TTAA 3 cut(s) 51, 225, 635
MspR9I CCNGG 4 cut(s) 311, 372, 648, 680
MvaI CCWGG 4 cut(s) 311, 372, 648, 680
MwoI GCNNNNNNNGC 2 cut(s) 305, 430
NlaIII CATG 3 cut(s) 148, 322, 798
NlaIV GGNNCC 3 cut(s) 87, 412, 627
PagI TCATGA 1 cut(s) 794
PfeI GAWTC 2 cut(s) 141, 587
PfoI TCCNGGA 1 cut(s) 678
PkrI GCNGC 6 cut(s) 10, 189, 435, 438, 566, 569
PshAI GACNNNNGTC 1 cut(s) 459
Psp6I CCWGG 4 cut(s) 309, 370, 646, 678
PspGI CCWGG 4 cut(s) 309, 370, 646, 678
PspN4I GGNNCC 3 cut(s) 87, 412, 627
PspPI GGNCC 2 cut(s) 322, 410
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
SaqAI TTAA 3 cut(s) 51, 225, 635
SatI GCNGC 6 cut(s) 9, 188, 434, 437, 565, 568
Sau96I GGNCC 2 cut(s) 322, 410
ScrFI CCNGG 4 cut(s) 311, 372, 648, 680
SduI GDGCHC 2 cut(s) 90, 647
SexAI ACCWGGT 1 cut(s) 370
SfaNI GCATC 3 cut(s) 286, 370, 741
SfcI CTRYAG 1 cut(s) 663
SinI GGWCC 2 cut(s) 322, 410
SpeI ACTAGT 1 cut(s) 229
Sse9I AATT 1 cut(s) 202
SspMI CTAG 1 cut(s) 230
StyD4I CCNGG 4 cut(s) 309, 370, 646, 678
StyI CCWWGG 1 cut(s) 559
TaiI ACGT 1 cut(s) 779
TaqI TCGA 1 cut(s) 479
TasI AATT 1 cut(s) 202
TfiI GAWTC 2 cut(s) 141, 587
Tru1I TTAA 3 cut(s) 51, 225, 635
Tru9I TTAA 3 cut(s) 51, 225, 635
TscAI CASTG 1 cut(s) 178
TseI GCWGC 6 cut(s) 8, 187, 433, 436, 564, 567
TspDTI ATGAA 2 cut(s) 255, 579
TspGWI ACGGA 1 cut(s) 723
TspRI CASTG 1 cut(s) 178
VpaK11BI GGWCC 2 cut(s) 322, 410
XapI RAATTY 1 cut(s) 202
XcmI CCANNNNNNNNNTGG 1 cut(s) 335
XspI CTAG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.