Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002613.1

Orthogroup ID

OG0009832

Physical Location & Seq

Genomic Coordinates Reverse (-)

4934 .. 7453

Gene Structure 2520 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002613.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

atggccgcttcaggcgggtataattaccgagatgctgctactcagagaagctctttcaaggtggataggcctctttctgtcaattccaaccccaagtctgctgtaaagtccaagcctttgcttcctcctcgccggaacagcactggctctattggtgctgctgctgctgctgctggaactgcctctaaggataatactggagttcctggaagagtccgagtagctgtgagattgcggccacgtaactctgatgaaatgatctcagatgctgattttgctgaaattgtagaattacagccagagcttaaaaggttgaaacttcggagaaacaattgggacttggatacttatgagttcgatgaagttctcacagagtttgcatcacaaaagcgtgtttatgaagtagtggcaaagcctgttgtggagagtgttctggaaggttataatgggacagtcatggcatatggccagactggtacaggaaagacgtatacacttggacgacttggagaggaggatactgctgctcgtggaataatggtccgtgccatggaggatattttagcagatgtatctctggagtctgattctttgtcagtctcgtatctgcagctttacatggaaaccatacatgacctactcgatcctgcaaatgatagcatttctatagtggaagaccccaaaactggtgatgtctcactaccaggggcaagcctagttgaaatcagggaccacaagagtttcgtggaactactaagattaggggaagctcaccgctttgctaccaatacaaaactgaacactgagtcttctcgtagccatgctattctgatggtaagtaatctatatttctctttttacgaggcttatgtgtttaaaagtgagtggttggtgaagattttcaaagctgataatatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04144 ko04728 map04144 map04728

Pfam Domains

Protein Families

Arm Kinesin

Protein Analysis

306

Amino Acids

33.8

Weight (kDa)

5.57

Isoelectric Point (pI)

32.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12430 AT1G12430
fragaria_vesca	FvH4_5g00930 FvH4_5g00930 FvH4_5g00930
malus_domestica	MD04G1077000.v1.1 MD06G1067900.v1.1
prunus_persica	Prupe.5G082300_v2.0.a1 Prupe.5G082300_v2.0.a1
pyrus_communis	pycom04g06770
rosa_chinensis	RchiOBHm_Chr7g0200461
rosa_laevigata	RLG00000003701
rosa_multiflora	Rmu_sc0000617.1_g000027 Rmu_sc0002613.1_g000001
rosa_roxburghii	Rroxscaffold_3G00255950
rosa_rugosa	Rorug07G0060400
rosa_samantha	Rh7AG185900 Rh7BG189000 Rh7CG196200 Rh7DG190000
rosa_wichuraiana	Rw7G016300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	444
AccI	GTMKAC	1 cut(s)	491
AciI	CCGC	4 cut(s)	6, 15, 235, 775
AclWI	GGATC	1 cut(s)	638
AcoI	YGGCCR	3 cut(s)	3, 236, 466
AfaI	GTAC	1 cut(s)	478
AfiI	CCNNNNNNNGG	2 cut(s)	550, 686
AgsI	TTSAA	4 cut(s)	58, 316, 722, 904
AjnI	CCWGG	2 cut(s)	205, 703
AluBI	AGCT	6 cut(s)	51, 224, 304, 613, 770, 908
AluI	AGCT	6 cut(s)	51, 224, 304, 613, 770, 908
Alw26I	GTCTC	2 cut(s)	604, 700
AlwI	GGATC	1 cut(s)	638
AlwNI	CAGNNNCTG	1 cut(s)	269
AoxI	GGCC	4 cut(s)	3, 68, 236, 466
ApeKI	GCWGC	8 cut(s)	35, 158, 161, 164, 167, 170, 524, 610
Asp700I	GAANNNNTTC	1 cut(s)	899
AspS9I	GGNCC	2 cut(s)	541, 730
AsuHPI	GGTGA	3 cut(s)	701, 764, 904
AvaII	GGWCC	2 cut(s)	541, 730
BalI	TGGCCA	1 cut(s)	468
BauI	CACGAG	1 cut(s)	528
BbsI	GAAGAC	2 cut(s)	681, 801
BbvI	GCAGC	8 cut(s)	22, 145, 148, 151, 154, 157, 511, 622
BccI	CCATC	1 cut(s)	826
BciT130I	CCWGG	2 cut(s)	207, 705
BciVI	GTATCC	2 cut(s)	337, 511
BcoDI	GTCTC	2 cut(s)	604, 700
BfaI	CTAG	1 cut(s)	716
BfmI	CTRYAG	2 cut(s)	608, 666
BfuI	GTATCC	2 cut(s)	337, 511
Bme1390I	CCNGG	2 cut(s)	207, 705
Bme18I	GGWCC	2 cut(s)	541, 730
BmgT120I	GGNCC	2 cut(s)	541, 730
BmiI	GGNNCC	1 cut(s)	731
BmrFI	CCNGG	2 cut(s)	207, 705
BmsI	GCATC	3 cut(s)	22, 256, 389
BpiI	GAAGAC	2 cut(s)	681, 801
BpmI	CTGGAG	2 cut(s)	219, 599
BsaAI	YACGTR	1 cut(s)	242
BsaJI	CCNNGG	2 cut(s)	549, 704
Bsc4I	CCNNNNNNNGG	2 cut(s)	550, 686
Bse1I	ACTGG	4 cut(s)	148, 202, 478, 691
BseBI	CCWGG	2 cut(s)	207, 705
BseDI	CCNNGG	2 cut(s)	549, 704
BseLI	CCNNNNNNNGG	2 cut(s)	550, 686
BseMII	CTCAG	3 cut(s)	56, 276, 795
BseNI	ACTGG	4 cut(s)	148, 202, 478, 691
BseRI	GAGGAG	2 cut(s)	117, 527
BseXI	GCAGC	8 cut(s)	22, 145, 148, 151, 154, 157, 511, 622
BshFI	GGCC	4 cut(s)	5, 70, 238, 468
BsiSI	CCGG	1 cut(s)	133
BslFI	GGGAC	3 cut(s)	350, 463, 743
BslI	CCNNNNNNNGG	2 cut(s)	550, 686
BsmAI	GTCTC	2 cut(s)	604, 700
BsmFI	GGGAC	3 cut(s)	350, 463, 743
BsnI	GGCC	4 cut(s)	5, 70, 238, 468
Bsp143I	GATC	2 cut(s)	258, 643
Bsp19I	CCATGG	1 cut(s)	549
BspACI	CCGC	4 cut(s)	6, 15, 235, 775
BspANI	GGCC	4 cut(s)	5, 70, 238, 468
BspCNI	CTCAG	3 cut(s)	55, 275, 796
BspLI	GGNNCC	1 cut(s)	731
BspMAI	CTGCAG	1 cut(s)	612
BspPI	GGATC	1 cut(s)	638
BsrI	ACTGG	4 cut(s)	148, 202, 478, 691
BssECI	CCNNGG	2 cut(s)	549, 704
BssMI	GATC	2 cut(s)	258, 643
BssNAI	GTATAC	1 cut(s)	492
BssSI	CACGAG	1 cut(s)	528
BssT1I	CCWWGG	1 cut(s)	549
Bst1107I	GTATAC	1 cut(s)	492
Bst2BI	CACGAG	1 cut(s)	528
Bst2UI	CCWGG	2 cut(s)	207, 705
Bst4CI	ACNGT	1 cut(s)	454
Bst6I	CTCTTC	1 cut(s)	205
BstBAI	YACGTR	1 cut(s)	242
BstC8I	GCNNGC	1 cut(s)	712
BstDEI	CTNAG	5 cut(s)	42, 186, 262, 755, 804
BstDSI	CCRYGG	1 cut(s)	549
BstKTI	GATC	2 cut(s)	261, 646
BstMAI	GTCTC	2 cut(s)	604, 700
BstMBI	GATC	2 cut(s)	258, 643
BstMWI	GCNNNNNNNGC	6 cut(s)	138, 164, 167, 170, 179, 275
BstNI	CCWGG	2 cut(s)	207, 705
BstSCI	CCNGG	2 cut(s)	205, 703
BstSFI	CTRYAG	2 cut(s)	608, 666
BstV1I	GCAGC	8 cut(s)	22, 145, 148, 151, 154, 157, 511, 622
BstV2I	GAAGAC	2 cut(s)	681, 801
BstZ17I	GTATAC	1 cut(s)	492
BsuI	GTATCC	2 cut(s)	337, 511
BsuRI	GGCC	4 cut(s)	5, 70, 238, 468
BtgI	CCRYGG	1 cut(s)	549
BtsIMutI	CAGTG	2 cut(s)	141, 801
Cac8I	GCNNGC	1 cut(s)	712
CaiI	CAGNNNCTG	1 cut(s)	269
Cfr13I	GGNCC	2 cut(s)	541, 730
Csp6I	GTAC	1 cut(s)	477
CviAII	CATG	5 cut(s)	457, 550, 619, 632, 821
CviQI	GTAC	1 cut(s)	477
DdeI	CTNAG	5 cut(s)	42, 186, 262, 755, 804
DpnI	GATC	2 cut(s)	260, 645
DpnII	GATC	2 cut(s)	258, 643
DraI	TTTAAA	1 cut(s)	877
EaeI	YGGCCR	3 cut(s)	3, 236, 466
Eam1104I	CTCTTC	1 cut(s)	205
EarI	CTCTTC	1 cut(s)	205
Eco130I	CCWWGG	1 cut(s)	549
Eco147I	AGGCCT	1 cut(s)	70
Eco47I	GGWCC	2 cut(s)	541, 730
EcoRII	CCWGG	2 cut(s)	205, 703
EcoT14I	CCWWGG	1 cut(s)	549
ErhI	CCWWGG	1 cut(s)	549
FaeI	CATG	5 cut(s)	460, 553, 622, 635, 824
FaqI	GGGAC	3 cut(s)	350, 463, 743
FatI	CATG	5 cut(s)	456, 549, 618, 631, 820
FauI	CCCGC	1 cut(s)	8
FauNDI	CATATG	1 cut(s)	463
FblI	GTMKAC	1 cut(s)	491
FspBI	CTAG	1 cut(s)	716
GsuI	CTGGAG	2 cut(s)	219, 599
HaeIII	GGCC	4 cut(s)	5, 70, 238, 468
HapII	CCGG	1 cut(s)	133
Hin1II	CATG	5 cut(s)	460, 553, 622, 635, 824
HinfI	GANTC	4 cut(s)	213, 581, 587, 806
HpaII	CCGG	1 cut(s)	133
HphI	GGTGA	3 cut(s)	701, 764, 904
Hpy166II	GTNNAC	1 cut(s)	492
Hpy188I	TCNGA	7 cut(s)	45, 218, 250, 265, 324, 586, 831
Hpy188III	TCNNGA	2 cut(s)	434, 578
Hpy8I	GTNNAC	1 cut(s)	492
HpyAV	CCTTC	1 cut(s)	431
HpyCH4III	ACNGT	1 cut(s)	454
HpyCH4IV	ACGT	2 cut(s)	241, 488
HpyCH4V	TGCA	3 cut(s)	380, 610, 650
HpyF10VI	GCNNNNNNNGC	6 cut(s)	138, 164, 167, 170, 179, 275
HpyF3I	CTNAG	5 cut(s)	42, 186, 262, 755, 804
HpySE526I	ACGT	2 cut(s)	241, 488
Hsp92II	CATG	5 cut(s)	460, 553, 622, 635, 824
Kzo9I	GATC	2 cut(s)	258, 643
Lsp1109I	GCAGC	8 cut(s)	22, 145, 148, 151, 154, 157, 511, 622
LweI	GCATC	3 cut(s)	22, 256, 389
MaeI	CTAG	1 cut(s)	716
MaeII	ACGT	2 cut(s)	241, 488
MaeIII	GTNAC	1 cut(s)	242
MalI	GATC	2 cut(s)	260, 645
MboI	GATC	2 cut(s)	258, 643
MboII	GAAGA	4 cut(s)	222, 686, 801, 907
MfeI	CAATTG	1 cut(s)	331
MlsI	TGGCCA	1 cut(s)	468
MluCI	AATT	5 cut(s)	22, 82, 282, 290, 331
MluNI	TGGCCA	1 cut(s)	468
MlyI	GAGTC	3 cut(s)	222, 590, 815
MmeI	TCCRAC	1 cut(s)	111
MnlI	CCTC	8 cut(s)	81, 135, 138, 193, 505, 508, 547, 856
Mox20I	TGGCCA	1 cut(s)	468
MroXI	GAANNNNTTC	1 cut(s)	899
MscI	TGGCCA	1 cut(s)	468
MseI	TTAA	3 cut(s)	306, 876, 919
Msp20I	TGGCCA	1 cut(s)	468
MspI	CCGG	1 cut(s)	133
MspR9I	CCNGG	2 cut(s)	207, 705
MunI	CAATTG	1 cut(s)	331
MvaI	CCWGG	2 cut(s)	207, 705
MwoI	GCNNNNNNNGC	6 cut(s)	138, 164, 167, 170, 179, 275
NcoI	CCATGG	1 cut(s)	549
NdeI	CATATG	1 cut(s)	463
NdeII	GATC	2 cut(s)	258, 643
NlaIII	CATG	5 cut(s)	460, 553, 622, 635, 824
NlaIV	GGNNCC	1 cut(s)	731
PceI	AGGCCT	1 cut(s)	70
PdmI	GAANNNNTTC	1 cut(s)	899
PfeI	GAWTC	1 cut(s)	587
PfoI	TCCNGGA	1 cut(s)	205
PleI	GAGTC	3 cut(s)	221, 589, 814
PpsI	GAGTC	3 cut(s)	221, 589, 814
Ppu21I	YACGTR	1 cut(s)	242
PsiI	TTATAA	1 cut(s)	444
Psp6I	CCWGG	2 cut(s)	205, 703
PspGI	CCWGG	2 cut(s)	205, 703
PspN4I	GGNNCC	1 cut(s)	731
PspPI	GGNCC	2 cut(s)	541, 730
PstI	CTGCAG	1 cut(s)	612
PstNI	CAGNNNCTG	1 cut(s)	269
RsaI	GTAC	1 cut(s)	478
RsaNI	GTAC	1 cut(s)	477
SaqAI	TTAA	3 cut(s)	306, 876, 919
Sau3AI	GATC	2 cut(s)	258, 643
Sau96I	GGNCC	2 cut(s)	541, 730
SchI	GAGTC	3 cut(s)	222, 590, 815
ScrFI	CCNGG	2 cut(s)	207, 705
SfaNI	GCATC	3 cut(s)	22, 256, 389
SfcI	CTRYAG	2 cut(s)	608, 666
SinI	GGWCC	2 cut(s)	541, 730
Sse9I	AATT	5 cut(s)	22, 82, 282, 290, 331
SseBI	AGGCCT	1 cut(s)	70
SsiI	CCGC	4 cut(s)	6, 15, 235, 775
SspI	AATATT	1 cut(s)	916
SspMI	CTAG	1 cut(s)	716
StuI	AGGCCT	1 cut(s)	70
StyD4I	CCNGG	2 cut(s)	205, 703
StyI	CCWWGG	1 cut(s)	549
TaaI	ACNGT	1 cut(s)	454
TaiI	ACGT	2 cut(s)	244, 491
TaqI	TCGA	2 cut(s)	357, 642
TasI	AATT	5 cut(s)	22, 82, 282, 290, 331
TauI	GCSGC	2 cut(s)	8, 238
TfiI	GAWTC	1 cut(s)	587
Tru1I	TTAA	3 cut(s)	306, 876, 919
Tru9I	TTAA	3 cut(s)	306, 876, 919
TscAI	CASTG	2 cut(s)	148, 808
TseI	GCWGC	8 cut(s)	35, 158, 161, 164, 167, 170, 524, 610
TspDTI	ATGAA	3 cut(s)	267, 375, 414
TspGWI	ACGGA	1 cut(s)	533
TspRI	CASTG	2 cut(s)	148, 808
VpaK11BI	GGWCC	2 cut(s)	541, 730
XmiI	GTMKAC	1 cut(s)	491
XmnI	GAANNNNTTC	1 cut(s)	899
XspI	CTAG	1 cut(s)	716

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.