Rmu_sc0002725.1_g000003

SPFH domain / Band 7 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002725.1
OG0017776
Physical Location & Seq
Reverse (-)
20347 .. 23282
2936 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 906 bp
atgagtttgcctaagcttgcgttgagatctctgaggccgctgcactccagagttctcgctcgcagtcgttttgtcccctcacacgaccacggctatgatgtcatcaacctcagtcctcccccgattcattggagtggtgggtttctggtgcctaatacccaggcggttgtgatcgagcgatttggaaagtaccccaaggtgaagtggcctggaatacgtcgcttaattccatttgttgataaaatcgtaaacgtggtttccttgagagaaaagactattcatattcctgcgcagaacgctacgaccagcaactctattcccctttcgatttcggaccctgtgctggcctcttatgaggttgacaatcccgtggtcgagactattgctcttgcccagcgtaccctacgttctgtaattgggcaattcactttcgagcacatagtacagaatcatggttactttcataattgtctaatttttgcactcatcgacggggcagggagatggggaattgcctgtcggtgctttgagataaatgacatagctgtttcacctgaatttaaaaaagctcttgaggaccggaaggcagagaaacaaaagagaggattggcagaggttcttagcatttcgtctaatgccctgacaagagcttatgggttagagcacgaagccctaagcctgaaatccaaaattcgtagccttcaaatcccagaaaccaccgccgcccaccttgaagatctcaactccagaagttcagaaccggcgaccccacccccagaacctggaggcaaaccactgaaccggccaccgaaagtagcaaaagtccctctgcccggttcaaagccttcctcaccacttcctgcagccatactcgaccactattctgtggaaggaaacacatcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7 Band_7_C

Protein Analysis

301

Amino Acids

33.09

Weight (kDa)

9.51

Isoelectric Point (pI)

56.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 50 - 203 1.9e-14 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017776)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0330681
rosa_laevigata RLG00000030091
rosa_multiflora Rmu_sc0002725.1_g000003 Rmu_sc0004401.1_g000006
rosa_roxburghii Rroxscaffold_3G00227450 Rroxscaffold_4G00319780
rosa_rugosa Rorug01G0090400
rosa_samantha Rh1AG110100 Rh1AG110900 Rh1CG104800 Rh1DG114000
rosa_wichuraiana Rw1G009020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 291
AccB1I GGYRCC 1 cut(s) 148
AccB7I CCANNNNNTGG 1 cut(s) 782
AciI CCGC 4 cut(s) 38, 164, 720, 723
AcoI YGGCCR 1 cut(s) 803
AcsI RAATTY 2 cut(s) 557, 690
AfaI GTAC 3 cut(s) 191, 400, 444
AfiI CCNNNNNNNGG 3 cut(s) 343, 782, 833
AgsI TTSAA 3 cut(s) 704, 734, 840
AjnI CCWGG 3 cut(s) 159, 208, 781
AluBI AGCT 4 cut(s) 16, 545, 569, 650
AluI AGCT 4 cut(s) 16, 545, 569, 650
Alw21I GWGCWC 2 cut(s) 438, 666
Alw26I GTCTC 1 cut(s) 371
AlwNI CAGNNNCTG 1 cut(s) 782
AoxI GGCC 4 cut(s) 35, 206, 345, 803
ApeKI GCWGC 2 cut(s) 40, 863
ApoI RAATTY 2 cut(s) 557, 690
AspLEI GCGC 1 cut(s) 292
AspS9I GGNCC 2 cut(s) 334, 577
AsuC2I CCSGG 1 cut(s) 834
AsuHPI GGTGA 3 cut(s) 211, 543, 843
AvaII GGWCC 2 cut(s) 334, 577
BanI GGYRCC 1 cut(s) 148
Bbv12I GWGCWC 2 cut(s) 438, 666
BbvI GCAGC 2 cut(s) 27, 875
BccI CCATC 1 cut(s) 498
BceAI ACGGC 1 cut(s) 106
BcgI CGANNNNNNTGC 2 cut(s) 365, 399
BciT130I CCWGG 3 cut(s) 161, 210, 783
BcnI CCSGG 1 cut(s) 834
BcoDI GTCTC 1 cut(s) 371
BfmI CTRYAG 1 cut(s) 861
BglII AGATCT 2 cut(s) 26, 736
BisI GCNGC 4 cut(s) 38, 41, 723, 864
BlsI GCNGC 4 cut(s) 39, 42, 724, 865
Bme1390I CCNGG 4 cut(s) 161, 210, 783, 834
Bme18I GGWCC 2 cut(s) 334, 577
BmgT120I GGNCC 2 cut(s) 334, 577
BmiI GGNNCC 2 cut(s) 150, 336
BmrFI CCNGG 4 cut(s) 161, 210, 783, 834
BpmI CTGGAG 3 cut(s) 31, 730, 804
Bpu10I CCTNAGC 2 cut(s) 12, 674
BpuEI CTTGAG 2 cut(s) 283, 593
BpuMI CCSGG 1 cut(s) 834
BsaJI CCNNGG 4 cut(s) 88, 159, 195, 369
BsaWI WCCGGW 1 cut(s) 579
Bsc4I CCNNNNNNNGG 3 cut(s) 343, 782, 833
Bse118I RCCGGY 2 cut(s) 760, 801
BseBI CCWGG 3 cut(s) 161, 210, 783
BseDI CCNNGG 4 cut(s) 88, 159, 195, 369
BseLI CCNNNNNNNGG 3 cut(s) 343, 782, 833
BseMII CTCAG 2 cut(s) 23, 124
BseXI GCAGC 2 cut(s) 27, 875
BseYI CCCAGC 1 cut(s) 393
BsgI GTGCAG 1 cut(s) 26
BshFI GGCC 4 cut(s) 37, 208, 347, 805
BshNI GGYRCC 1 cut(s) 148
BsiHKAI GWGCWC 2 cut(s) 438, 666
BsiSI CCGG 4 cut(s) 580, 761, 802, 834
BslFI GGGAC 2 cut(s) 59, 809
BslI CCNNNNNNNGG 3 cut(s) 343, 782, 833
BsmAI GTCTC 1 cut(s) 371
BsmFI GGGAC 2 cut(s) 59, 809
BsnI GGCC 4 cut(s) 37, 208, 347, 805
Bsp1286I GDGCHC 2 cut(s) 438, 666
Bsp143I GATC 3 cut(s) 26, 171, 736
BspACI CCGC 4 cut(s) 38, 164, 720, 723
BspANI GGCC 4 cut(s) 37, 208, 347, 805
BspCNI CTCAG 2 cut(s) 24, 123
BspLI GGNNCC 2 cut(s) 150, 336
BspMAI CTGCAG 1 cut(s) 865
BspT107I GGYRCC 1 cut(s) 148
BsrFI RCCGGY 2 cut(s) 760, 801
BssAI RCCGGY 2 cut(s) 760, 801
BssECI CCNNGG 4 cut(s) 88, 159, 195, 369
BssMI GATC 3 cut(s) 26, 171, 736
BssT1I CCWWGG 1 cut(s) 195
Bst2UI CCWGG 3 cut(s) 161, 210, 783
BstC8I GCNNGC 3 cut(s) 18, 61, 345
BstDEI CTNAG 6 cut(s) 12, 32, 110, 620, 674, 903
BstDSI CCRYGG 2 cut(s) 88, 369
BstHHI GCGC 1 cut(s) 292
BstKTI GATC 3 cut(s) 29, 174, 739
BstMAI GTCTC 1 cut(s) 371
BstMBI GATC 3 cut(s) 26, 171, 736
BstMWI GCNNNNNNNGC 1 cut(s) 296
BstNI CCWGG 3 cut(s) 161, 210, 783
BstSCI CCNGG 4 cut(s) 159, 208, 781, 832
BstSFI CTRYAG 1 cut(s) 861
BstV1I GCAGC 2 cut(s) 27, 875
BstX2I RGATCY 2 cut(s) 26, 736
BstYI RGATCY 2 cut(s) 26, 736
BsuRI GGCC 4 cut(s) 37, 208, 347, 805
BtgI CCRYGG 2 cut(s) 88, 369
BtsIMutI CAGTG 1 cut(s) 794
Cac8I GCNNGC 3 cut(s) 18, 61, 345
CaiI CAGNNNCTG 1 cut(s) 782
CfoI GCGC 1 cut(s) 292
Cfr10I RCCGGY 2 cut(s) 760, 801
Cfr13I GGNCC 2 cut(s) 334, 577
Csp6I GTAC 3 cut(s) 190, 399, 443
CviAII CATG 1 cut(s) 452
CviQI GTAC 3 cut(s) 190, 399, 443
DdeI CTNAG 6 cut(s) 12, 32, 110, 620, 674, 903
DpnI GATC 3 cut(s) 28, 173, 738
DpnII GATC 3 cut(s) 26, 171, 736
DraI TTTAAA 1 cut(s) 562
EaeI YGGCCR 1 cut(s) 803
Eco130I CCWWGG 1 cut(s) 195
Eco47I GGWCC 2 cut(s) 334, 577
EcoRII CCWGG 3 cut(s) 159, 208, 781
EcoT14I CCWWGG 1 cut(s) 195
ErhI CCWWGG 1 cut(s) 195
FaeI CATG 1 cut(s) 455
FaiI YATR 9 cut(s) 96, 282, 354, 440, 453, 465, 542, 654, 869
FaqI GGGAC 2 cut(s) 59, 809
FatI CATG 1 cut(s) 451
Fnu4HI GCNGC 4 cut(s) 38, 41, 723, 864
Fsp4HI GCNGC 4 cut(s) 38, 41, 723, 864
FspI TGCGCA 1 cut(s) 291
GlaI GCGC 1 cut(s) 291
GluI GCNGC 4 cut(s) 38, 41, 723, 864
GsaI CCCAGC 1 cut(s) 397
GsuI CTGGAG 3 cut(s) 31, 730, 804
HaeIII GGCC 4 cut(s) 37, 208, 347, 805
HapII CCGG 4 cut(s) 580, 761, 802, 834
HhaI GCGC 1 cut(s) 292
Hin1II CATG 1 cut(s) 455
Hin6I GCGC 1 cut(s) 290
HinP1I GCGC 1 cut(s) 290
HincII GTYRAC 1 cut(s) 361
HindII GTYRAC 1 cut(s) 361
HindIII AAGCTT 1 cut(s) 14
HinfI GANTC 2 cut(s) 124, 448
HpaII CCGG 4 cut(s) 580, 761, 802, 834
HphI GGTGA 3 cut(s) 211, 543, 843
Hpy166II GTNNAC 2 cut(s) 250, 361
Hpy188I TCNGA 3 cut(s) 33, 334, 757
Hpy188III TCNNGA 4 cut(s) 48, 376, 572, 747
Hpy8I GTNNAC 2 cut(s) 250, 361
Hpy99I CGWCG 2 cut(s) 222, 494
HpyAV CCTTC 4 cut(s) 577, 710, 855, 884
HpyCH4IV ACGT 3 cut(s) 217, 252, 406
HpyCH4V TGCA 3 cut(s) 43, 482, 863
HpyF10VI GCNNNNNNNGC 1 cut(s) 296
HpyF3I CTNAG 6 cut(s) 12, 32, 110, 620, 674, 903
HpySE526I ACGT 3 cut(s) 217, 252, 406
Hsp92II CATG 1 cut(s) 455
HspAI GCGC 1 cut(s) 290
Kzo9I GATC 3 cut(s) 26, 171, 736
Lsp1109I GCAGC 2 cut(s) 27, 875
MaeII ACGT 3 cut(s) 217, 252, 406
MaeIII GTNAC 1 cut(s) 455
MalI GATC 3 cut(s) 28, 173, 738
MboI GATC 3 cut(s) 26, 171, 736
MboII GAAGA 1 cut(s) 746
MflI RGATCY 2 cut(s) 26, 736
MhlI GDGCHC 2 cut(s) 438, 666
MluCI AATT 8 cut(s) 225, 414, 422, 466, 474, 510, 557, 690
MseI TTAA 2 cut(s) 224, 561
MslI CAYNNNNRTG 2 cut(s) 93, 132
MspA1I CMGCKG 1 cut(s) 40
MspI CCGG 4 cut(s) 580, 761, 802, 834
MspR9I CCNGG 4 cut(s) 161, 210, 783, 834
MvaI CCWGG 3 cut(s) 161, 210, 783
MwoI GCNNNNNNNGC 1 cut(s) 296
NciI CCSGG 1 cut(s) 834
NdeII GATC 3 cut(s) 26, 171, 736
NlaIII CATG 1 cut(s) 455
NlaIV GGNNCC 2 cut(s) 150, 336
NsbI TGCGCA 1 cut(s) 291
PfeI GAWTC 2 cut(s) 124, 448
PflMI CCANNNNNTGG 1 cut(s) 782
PkrI GCNGC 4 cut(s) 39, 42, 724, 865
Psp6I CCWGG 3 cut(s) 159, 208, 781
PspFI CCCAGC 1 cut(s) 393
PspGI CCWGG 3 cut(s) 159, 208, 781
PspN4I GGNNCC 2 cut(s) 150, 336
PspPI GGNCC 2 cut(s) 334, 577
PsrI GAACNNNNNNTAC 2 cut(s) 391, 423
PstI CTGCAG 1 cut(s) 865
PstNI CAGNNNCTG 1 cut(s) 782
PsuI RGATCY 2 cut(s) 26, 736
RsaI GTAC 3 cut(s) 191, 400, 444
RsaNI GTAC 3 cut(s) 190, 399, 443
RseI CAYNNNNRTG 2 cut(s) 93, 132
SaqAI TTAA 2 cut(s) 224, 561
SatI GCNGC 4 cut(s) 38, 41, 723, 864
Sau3AI GATC 3 cut(s) 26, 171, 736
Sau96I GGNCC 2 cut(s) 334, 577
ScrFI CCNGG 4 cut(s) 161, 210, 783, 834
SduI GDGCHC 2 cut(s) 438, 666
SfcI CTRYAG 1 cut(s) 861
SinI GGWCC 2 cut(s) 334, 577
SmiMI CAYNNNNRTG 2 cut(s) 93, 132
SmlI CTYRAG 2 cut(s) 262, 572
SmoI CTYRAG 2 cut(s) 262, 572
Sse9I AATT 8 cut(s) 225, 414, 422, 466, 474, 510, 557, 690
SsiI CCGC 4 cut(s) 38, 164, 720, 723
StyD4I CCNGG 4 cut(s) 159, 208, 781, 832
StyI CCWWGG 1 cut(s) 195
TaiI ACGT 3 cut(s) 220, 255, 409
TaqI TCGA 6 cut(s) 174, 326, 375, 432, 489, 873
TasI AATT 8 cut(s) 225, 414, 422, 466, 474, 510, 557, 690
TatI WGTACW 1 cut(s) 442
TauI GCSGC 2 cut(s) 40, 725
TfiI GAWTC 2 cut(s) 124, 448
Tru1I TTAA 2 cut(s) 224, 561
Tru9I TTAA 2 cut(s) 224, 561
TscAI CASTG 1 cut(s) 801
TseI GCWGC 2 cut(s) 40, 863
TspDTI ATGAA 3 cut(s) 116, 269, 452
TspRI CASTG 1 cut(s) 801
Van91I CCANNNNNTGG 1 cut(s) 782
VpaK11BI GGWCC 2 cut(s) 334, 577
XapI RAATTY 2 cut(s) 557, 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.