Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002823.1

Orthogroup ID

OG0012633

Physical Location & Seq

Genomic Coordinates Reverse (-)

30351 .. 33164

Gene Structure 2814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002823.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1476 bp

atgagctgtgagctgagtgttgttaggagaagttgtgtggttttgttggaggagatgaccaaagtgaggccgttgattaggcctgaagtgaaggaagaggcggtgagggtggcattggagtggaagggaaaggctagaaatgaagcgaccaatactctggagctttgggctttcttgcagcttgtgggtgcttttgggttggtttgtgagtttgatagggaagagattttcaagctgtttggtagcgtggcggtaaggaaacaggcgccggagttgtttaggtctcttggtttcggggatagagtgtcggagtttattcaaaaactggtatcacagaagatgcgacttgaggctattagattcattcatgcatttgaacagcttgacaagttccctcctatgcccctgcttaaagcacatttgaagttcgccaagaaggatgcaaagattagttgcaagagggggcaagatcctcttaaagcagaggatgctgccatagataaagaagtagtatctctaaaagctataatacgatgcattgaaagctacaagcttggagttgaaccacagtattctcctgagaacctcagaaagcgcatcagccagctgaaaaagcagaaaaaagagaagcaagttactcaagcaactcgtgtccctgaggttcaggggcaacacttgagtggaaagaaacgtactgcccctgaagttaaggctcaacccaataagaagaacagtaataagcatcatcggacagatccagctgctgttagaaatgcttctttcagagcaccaaccacaggacactcaatacacccatcttatcttcgtccagtagactcgtttgagagtcgaggtgcagagtactttataccatcagctggaatgcctcgacaagcagtggatgctccccatacttcttatggcactgcttcgacctttaactcattgcgagcatctcattatcagctaacaggttcatacaaaggtgaaggtgccgaatatgctgctcgatactgtgattcggcatactccattcctgatgctcatagtggcttatcagctggacattatggtttgatcagttcctctcctatcacccatacccggcaaaccaccttgacaggtggagcctacgaattgacaggctcctctcctattgcccatacgcggcacaccactcagcatataaactcagcaactgcttcctatggattggggggcagtacttctgtatcttcacatttgagcccattaaccaagcggtatggggctagtagtatggctgtaaatgggaggactgggcagtttggatcagcaggaagccctccccctgcgcgcgtaaccaatgtgagcccaaattcttatgtgtccggtgatccactgagaatggctaatcacaaggataggccagttccttcaagtagtggctatggcacacatactaatcagtaccagccttccatttatcacctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Frigida

Protein Analysis

491

Amino Acids

54.05

Weight (kDa)

9.72

Isoelectric Point (pI)

47.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012633)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g04240 FvH4_6g04240
malus_domestica	MD00G1051400.v1.1 MD12G1231700.v1.1 MD12G1232000.v1.1
prunus_persica	Prupe.6G334900_v2.0.a1
pyrus_communis	pycom04g19180 pycom12g21440
rosa_chinensis	RchiOBHm_Chr3g0452911
rosa_laevigata	RLG00000025560
rosa_multiflora	Rmu_sc0002823.1_g000005 Rmu_sc0002823.1_g000006
rosa_roxburghii	Rroxscaffold_6G00429920
rosa_rugosa	Rorug02G0643600
rosa_samantha	Rh3AG046400 Rh3BG048900 Rh3CG047500 Rh3DG048500
rosa_wichuraiana	Rw3G003650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	265, 992
AccB7I	CCANNNNNTGG	1 cut(s)	878
AccI	GTMKAC	1 cut(s)	834
AccII	CGCG	3 cut(s)	1168, 1336, 1338
AciI	CCGC	4 cut(s)	101, 251, 1168, 1261
AclWI	GGATC	4 cut(s)	464, 749, 1318, 1370
AcsI	RAATTY	1 cut(s)	1357
AcuI	CTGAAG	2 cut(s)	105, 723
AcyI	GRCGYC	1 cut(s)	266
AfaI	GTAC	4 cut(s)	694, 863, 1225, 1451
AfiI	CCNNNNNNNGG	5 cut(s)	66, 797, 878, 1104, 1167
AgsI	TTSAA	7 cut(s)	232, 320, 377, 424, 542, 563, 1419
AleI	CACNNNNGTG	1 cut(s)	678
Alw21I	GWGCWC	1 cut(s)	790
Alw26I	GTCTC	1 cut(s)	288
AlwI	GGATC	4 cut(s)	464, 749, 1318, 1370
AlwNI	CAGNNNCTG	2 cut(s)	764, 1199
AoxI	GGCC	3 cut(s)	68, 80, 1406
ApeKI	GCWGC	4 cut(s)	178, 491, 761, 1004
ApoI	RAATTY	1 cut(s)	1357
Asp700I	GAANNNNTTC	1 cut(s)	775
AspLEI	GCGC	4 cut(s)	268, 597, 1336, 1338
AsuC2I	CCSGG	1 cut(s)	1105
AsuHPI	GGTGA	5 cut(s)	115, 998, 1087, 1385, 1460
AxyI	CCTNAGG	1 cut(s)	657
BaeI	ACNNNNGTAYC	2 cut(s)	1215, 1248
BanI	GGYRCC	2 cut(s)	265, 992
BanII	GRGCYC	2 cut(s)	1250, 1355
BauI	CACGAG	1 cut(s)	648
Bbv12I	GWGCWC	1 cut(s)	790
BbvI	GCAGC	4 cut(s)	190, 478, 748, 991
BccI	CCATC	2 cut(s)	823, 880
BceAI	ACGGC	1 cut(s)	55
BcgI	CGANNNNNNTGC	2 cut(s)	986, 1020
BclI	TGATCA	1 cut(s)	1077
BcnI	CCSGG	1 cut(s)	1105
BcoDI	GTCTC	1 cut(s)	288
BfaI	CTAG	2 cut(s)	135, 1272
BfoI	RGCGCY	1 cut(s)	269
BisI	GCNGC	5 cut(s)	179, 492, 762, 1005, 1169
BlsI	GCNGC	5 cut(s)	180, 493, 763, 1006, 1170
BmcAI	AGTACT	2 cut(s)	863, 1225
Bme1390I	CCNGG	1 cut(s)	1105
BmiI	GGNNCC	4 cut(s)	267, 994, 1129, 1147
BmrFI	CCNGG	1 cut(s)	1105
BmrI	ACTGGG	1 cut(s)	1308
BmsI	GCATC	9 cut(s)	330, 430, 478, 524, 606, 751, 892, 962, 1030
BmuI	ACTGGG	1 cut(s)	1308
BpmI	CTGGAG	1 cut(s)	179
BpuEI	CTTGAG	3 cut(s)	368, 624, 697
BpuMI	CCSGG	1 cut(s)	1105
BsaHI	GRCGYC	1 cut(s)	266
BsaI	GGTCTC	1 cut(s)	288
BsaWI	WCCGGW	1 cut(s)	1370
BsaXI	ACNNNNNCTCC	2 cut(s)	19, 49
Bsc4I	CCNNNNNNNGG	5 cut(s)	66, 797, 878, 1104, 1167
Bse1I	ACTGG	4 cut(s)	330, 830, 1303, 1409
Bse21I	CCTNAGG	1 cut(s)	657
Bse3DI	GCAATG	1 cut(s)	944
BseGI	GGATG	3 cut(s)	445, 493, 907
BseLI	CCNNNNNNNGG	5 cut(s)	66, 797, 878, 1104, 1167
BseMI	GCAATG	1 cut(s)	944
BseMII	CTCAG	7 cut(s)	5, 570, 601, 648, 1193, 1206, 1373
BseNI	ACTGG	4 cut(s)	330, 830, 1303, 1409
BsePI	GCGCGC	1 cut(s)	1334
BseRI	GAGGAG	2 cut(s)	65, 1138
BseXI	GCAGC	4 cut(s)	190, 478, 748, 991
BsgI	GTGCAG	1 cut(s)	876
Bsh1236I	CGCG	3 cut(s)	1168, 1336, 1338
BshFI	GGCC	3 cut(s)	70, 82, 1408
BshNI	GGYRCC	2 cut(s)	265, 992
BsiHKAI	GWGCWC	1 cut(s)	790
BsiSI	CCGG	3 cut(s)	269, 1105, 1371
BslFI	GGGAC	1 cut(s)	638
BslI	CCNNNNNNNGG	5 cut(s)	66, 797, 878, 1104, 1167
BsmAI	GTCTC	1 cut(s)	288
BsmFI	GGGAC	1 cut(s)	638
BsmI	GAATGC	1 cut(s)	888
BsnI	GGCC	3 cut(s)	70, 82, 1408
Bso31I	GGTCTC	1 cut(s)	288
Bsp1286I	GDGCHC	3 cut(s)	790, 1250, 1355
Bsp143I	GATC	5 cut(s)	469, 754, 1077, 1310, 1375
BspACI	CCGC	4 cut(s)	101, 251, 1168, 1261
BspANI	GGCC	3 cut(s)	70, 82, 1408
BspCNI	CTCAG	7 cut(s)	6, 571, 600, 649, 1192, 1205, 1374
BspFNI	CGCG	3 cut(s)	1168, 1336, 1338
BspLI	GGNNCC	4 cut(s)	267, 994, 1129, 1147
BspPI	GGATC	4 cut(s)	464, 749, 1318, 1370
BspT107I	GGYRCC	2 cut(s)	265, 992
BspTNI	GGTCTC	1 cut(s)	288
BsrDI	GCAATG	1 cut(s)	944
BsrI	ACTGG	4 cut(s)	330, 830, 1303, 1409
BssHII	GCGCGC	1 cut(s)	1334
BssMI	GATC	5 cut(s)	469, 754, 1077, 1310, 1375
BssNI	GRCGYC	1 cut(s)	266
BssSI	CACGAG	1 cut(s)	648
Bst2BI	CACGAG	1 cut(s)	648
Bst4CI	ACNGT	3 cut(s)	570, 734, 1016
Bst6I	CTCTTC	2 cut(s)	90, 216
BstACI	GRCGYC	1 cut(s)	266
BstAPI	GCANNNNNTGC	2 cut(s)	488, 902
BstC8I	GCNNGC	3 cut(s)	605, 951, 1336
BstDEI	CTNAG	7 cut(s)	14, 579, 587, 657, 1179, 1192, 1382
BstF5I	GGATG	3 cut(s)	445, 493, 907
BstFNI	CGCG	3 cut(s)	1168, 1336, 1338
BstH2I	RGCGCY	1 cut(s)	269
BstHHI	GCGC	4 cut(s)	268, 597, 1336, 1338
BstKTI	GATC	5 cut(s)	472, 757, 1080, 1313, 1378
BstMAI	GTCTC	1 cut(s)	288
BstMBI	GATC	5 cut(s)	469, 754, 1077, 1310, 1375
BstMWI	GCNNNNNNNGC	5 cut(s)	488, 543, 613, 902, 1001
BstSCI	CCNGG	1 cut(s)	1103
BstUI	CGCG	3 cut(s)	1168, 1336, 1338
BstV1I	GCAGC	4 cut(s)	190, 478, 748, 991
BstX2I	RGATCY	2 cut(s)	469, 754
BstXI	CCANNNNNNTGG	1 cut(s)	157
BstYI	RGATCY	2 cut(s)	469, 754
Bsu36I	CCTNAGG	1 cut(s)	657
BsuRI	GGCC	3 cut(s)	70, 82, 1408
BtsCI	GGATG	3 cut(s)	445, 493, 907
BtsI	GCAGTG	2 cut(s)	903, 924
BtsIMutI	CAGTG	3 cut(s)	903, 924, 1379
Cac8I	GCNNGC	3 cut(s)	605, 951, 1336
CaiI	CAGNNNCTG	2 cut(s)	764, 1199
CfoI	GCGC	4 cut(s)	268, 597, 1336, 1338
Csp6I	GTAC	4 cut(s)	693, 862, 1224, 1450
CviAII	CATG	1 cut(s)	368
CviQI	GTAC	4 cut(s)	693, 862, 1224, 1450
DdeI	CTNAG	7 cut(s)	14, 579, 587, 657, 1179, 1192, 1382
DinI	GGCGCC	1 cut(s)	267
DpnI	GATC	5 cut(s)	471, 756, 1079, 1312, 1377
DpnII	GATC	5 cut(s)	469, 754, 1077, 1310, 1375
Eam1104I	CTCTTC	2 cut(s)	90, 216
EarI	CTCTTC	2 cut(s)	90, 216
Eco147I	AGGCCT	1 cut(s)	82
Eco24I	GRGCYC	2 cut(s)	1250, 1355
Eco31I	GGTCTC	1 cut(s)	288
Eco57I	CTGAAG	2 cut(s)	105, 723
Eco81I	CCTNAGG	1 cut(s)	657
EcoT22I	ATGCAT	2 cut(s)	373, 539
EcoT38I	GRGCYC	2 cut(s)	1250, 1355
EgeI	GGCGCC	1 cut(s)	267
EheI	GGCGCC	1 cut(s)	267
FaeI	CATG	1 cut(s)	371
FalI	AAGNNNNNCTT	2 cut(s)	459, 491
FaqI	GGGAC	1 cut(s)	638
FatI	CATG	1 cut(s)	367
FbaI	TGATCA	1 cut(s)	1077
FblI	GTMKAC	1 cut(s)	834
Fnu4HI	GCNGC	5 cut(s)	179, 492, 762, 1005, 1169
FokI	GGATG	3 cut(s)	452, 500, 914
FriOI	GRGCYC	2 cut(s)	1250, 1355
Fsp4HI	GCNGC	5 cut(s)	179, 492, 762, 1005, 1169
FspBI	CTAG	2 cut(s)	135, 1272
GlaI	GCGC	4 cut(s)	267, 596, 1335, 1337
GluI	GCNGC	5 cut(s)	179, 492, 762, 1005, 1169
GsuI	CTGGAG	1 cut(s)	179
HaeII	RGCGCY	1 cut(s)	269
HaeIII	GGCC	3 cut(s)	70, 82, 1408
HapII	CCGG	3 cut(s)	269, 1105, 1371
HhaI	GCGC	4 cut(s)	268, 597, 1336, 1338
Hin1I	GRCGYC	1 cut(s)	266
Hin1II	CATG	1 cut(s)	371
Hin6I	GCGC	4 cut(s)	266, 595, 1334, 1336
HinP1I	GCGC	4 cut(s)	266, 595, 1334, 1336
HindIII	AAGCTT	1 cut(s)	551
HinfI	GANTC	4 cut(s)	360, 836, 847, 1019
HpaII	CCGG	3 cut(s)	269, 1105, 1371
HphI	GGTGA	5 cut(s)	115, 998, 1087, 1385, 1460
Hpy166II	GTNNAC	1 cut(s)	835
Hpy188I	TCNGA	4 cut(s)	310, 590, 750, 785
Hpy188III	TCNNGA	3 cut(s)	158, 578, 1037
Hpy8I	GTNNAC	1 cut(s)	835
HpyAV	CCTTC	6 cut(s)	85, 118, 430, 983, 1425, 1467
HpyCH4III	ACNGT	3 cut(s)	570, 734, 1016
HpyCH4IV	ACGT	1 cut(s)	691
HpyCH4V	TGCA	6 cut(s)	178, 371, 443, 456, 537, 857
HpyF10VI	GCNNNNNNNGC	5 cut(s)	488, 543, 613, 902, 1001
HpyF3I	CTNAG	7 cut(s)	14, 579, 587, 657, 1179, 1192, 1382
HpySE526I	ACGT	1 cut(s)	691
Hsp92I	GRCGYC	1 cut(s)	266
Hsp92II	CATG	1 cut(s)	371
HspAI	GCGC	4 cut(s)	266, 595, 1334, 1336
KasI	GGCGCC	1 cut(s)	265
Ksp22I	TGATCA	1 cut(s)	1077
Kzo9I	GATC	5 cut(s)	469, 754, 1077, 1310, 1375
LmnI	GCTCC	4 cut(s)	160, 910, 1127, 1151
Lsp1109I	GCAGC	4 cut(s)	190, 478, 748, 991
LweI	GCATC	9 cut(s)	330, 430, 478, 524, 606, 751, 892, 962, 1030
MaeI	CTAG	2 cut(s)	135, 1272
MaeII	ACGT	1 cut(s)	691
MaeIII	GTNAC	2 cut(s)	634, 1339
MalI	GATC	5 cut(s)	471, 756, 1079, 1312, 1377
MboI	GATC	5 cut(s)	469, 754, 1077, 1310, 1375
MboII	GAAGA	6 cut(s)	107, 233, 349, 739, 815, 1227
MflI	RGATCY	2 cut(s)	469, 754
MhlI	GDGCHC	3 cut(s)	790, 1250, 1355
MluCI	AATT	2 cut(s)	1136, 1357
Mly113I	GGCGCC	1 cut(s)	266
MlyI	GAGTC	2 cut(s)	830, 856
MmeI	TCCRAC	2 cut(s)	27, 288
Mph1103I	ATGCAT	2 cut(s)	373, 539
MroXI	GAANNNNTTC	1 cut(s)	775
MseI	TTAA	5 cut(s)	411, 477, 708, 939, 1253
MslI	CAYNNNNRTG	2 cut(s)	118, 678
MspA1I	CMGCKG	4 cut(s)	607, 761, 878, 1061
MspI	CCGG	3 cut(s)	269, 1105, 1371
MspR9I	CCNGG	1 cut(s)	1105
Mva1269I	GAATGC	1 cut(s)	888
MvnI	CGCG	3 cut(s)	1168, 1336, 1338
MwoI	GCNNNNNNNGC	5 cut(s)	488, 543, 613, 902, 1001
NarI	GGCGCC	1 cut(s)	266
NciI	CCSGG	1 cut(s)	1105
NdeII	GATC	5 cut(s)	469, 754, 1077, 1310, 1375
NlaIII	CATG	1 cut(s)	371
NlaIV	GGNNCC	4 cut(s)	267, 994, 1129, 1147
NsiI	ATGCAT	2 cut(s)	373, 539
OliI	CACNNNNGTG	1 cut(s)	678
PauI	GCGCGC	1 cut(s)	1334
PceI	AGGCCT	1 cut(s)	82
PctI	GAATGC	1 cut(s)	888
PdmI	GAANNNNTTC	1 cut(s)	775
PfeI	GAWTC	2 cut(s)	360, 1019
PflMI	CCANNNNNTGG	1 cut(s)	878
PkrI	GCNGC	5 cut(s)	180, 493, 763, 1006, 1170
PleI	GAGTC	2 cut(s)	830, 855
PluTI	GGCGCC	1 cut(s)	269
PpsI	GAGTC	2 cut(s)	830, 855
PspN4I	GGNNCC	4 cut(s)	267, 994, 1129, 1147
PstNI	CAGNNNCTG	2 cut(s)	764, 1199
PsuI	RGATCY	2 cut(s)	469, 754
PteI	GCGCGC	1 cut(s)	1334
PvuII	CAGCTG	4 cut(s)	607, 761, 878, 1061
RsaI	GTAC	4 cut(s)	694, 863, 1225, 1451
RsaNI	GTAC	4 cut(s)	693, 862, 1224, 1450
RseI	CAYNNNNRTG	2 cut(s)	118, 678
SaqAI	TTAA	5 cut(s)	411, 477, 708, 939, 1253
SatI	GCNGC	5 cut(s)	179, 492, 762, 1005, 1169
Sau3AI	GATC	5 cut(s)	469, 754, 1077, 1310, 1375
ScaI	AGTACT	2 cut(s)	863, 1225
SchI	GAGTC	2 cut(s)	830, 856
ScrFI	CCNGG	1 cut(s)	1105
SduI	GDGCHC	3 cut(s)	790, 1250, 1355
SfaNI	GCATC	9 cut(s)	330, 430, 478, 524, 606, 751, 892, 962, 1030
SfoI	GGCGCC	1 cut(s)	267
SmiMI	CAYNNNNRTG	2 cut(s)	118, 678
SmlI	CTYRAG	3 cut(s)	347, 639, 676
SmoI	CTYRAG	3 cut(s)	347, 639, 676
Sse9I	AATT	2 cut(s)	1136, 1357
SseBI	AGGCCT	1 cut(s)	82
SsiI	CCGC	4 cut(s)	101, 251, 1168, 1261
SspDI	GGCGCC	1 cut(s)	265
SspMI	CTAG	2 cut(s)	135, 1272
StuI	AGGCCT	1 cut(s)	82
StyD4I	CCNGG	1 cut(s)	1103
TaaI	ACNGT	3 cut(s)	570, 734, 1016
TaiI	ACGT	1 cut(s)	694
TaqI	TCGA	4 cut(s)	850, 889, 932, 1009
TasI	AATT	2 cut(s)	1136, 1357
TatI	WGTACW	2 cut(s)	861, 1223
TauI	GCSGC	1 cut(s)	1171
TfiI	GAWTC	2 cut(s)	360, 1019
Tru1I	TTAA	5 cut(s)	411, 477, 708, 939, 1253
Tru9I	TTAA	5 cut(s)	411, 477, 708, 939, 1253
TscAI	CASTG	3 cut(s)	903, 931, 1386
TseI	GCWGC	4 cut(s)	178, 491, 761, 1004
TspDTI	ATGAA	4 cut(s)	156, 352, 356, 966
TspRI	CASTG	3 cut(s)	903, 931, 1386
Van91I	CCANNNNNTGG	1 cut(s)	878
XapI	RAATTY	1 cut(s)	1357
XcmI	CCANNNNNNNNNTGG	1 cut(s)	917
XmiI	GTMKAC	1 cut(s)	834
XmnI	GAANNNNTTC	1 cut(s)	775
XspI	CTAG	2 cut(s)	135, 1272
ZrmI	AGTACT	2 cut(s)	863, 1225
Zsp2I	ATGCAT	2 cut(s)	373, 539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.