Rw3G003650

FRIGIDA-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0012633
Physical Location & Seq
Forward (+)
3079299 .. 3082779
3481 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G003650.1

Sequence Viewer

Length: 1515 bp
ATGAGGTGGTTCTATCCGTCGGAGTCGAATAAGGGAGAAATGAGCTGTGAGCTGAGTGTTGTTAGGAGAAGTTGTGTGGTTTTGTTGGAGGAGATGACCAAAGTGAGGCCGTTGATTAGGCCTGAAGTGAAGGAAGAGGCGGTGAGGGTTGCATTGGAGTGGAAGGGAAAGGCTAGAAATGAAGCGACCAATACTCTGGAGCTTTGGGCTTTCTTGCAGCTTGTGGGTGCTTTTGGGTTGGTTGGTGAGTTTGATAGGGAAGAGATTTTCAAGCTGTTTGGTAGCGTGGCGGTAAGGAAACAGGCGCCGGAGTTGTTTAGGTCTCTTGGTTTCGGGGATAGAGTGTCGGAGTTTATTCAAAAACTGGTATCACAGAAGATGCGACTTGAGGCTATTAGATTCATTCATGCATTTGAACAGCTTGACAAGTTCCCTCCTATGCCCCTGCTTAAAGCACATTTGAAGTTTGCCAAGAAGGATGCAAAGATTAGTTGCAAGAGGGGGCAAGATCCTCTTAAAGCAGAGGATGCTGCCATAGATAAAGAAGTAGTATCTCTAAAAGCTATAATACGATGCATTGAAAGCTACAAGCTTGGAGTTGAACCACAGTATTCTCCTGAGAACCTCAGAAAGCGCATCAGCCAGCTGAAAAAGCAGAAAAAAGAGAAGCAAGTTACTCAAGCAACTCGTGTCCCTGAGGTTCAGGGGCAACACTTAAGTGGAAAGAAACGTACTGCCCCTGAAGTTAAGGCTCAACCCAATAAGAAGAACAGTAATAAGCATCATCGGACAGATCCAGCTGCTGTTAGAAATGCTTCTTTCAGAGCACCAACCACAGGACACTCAATACACCCATCTTATCTTCGTCCAGTAGACTCGTTTGAGAGCCGAGGTGCAGAGTACTTTATACCATCAGCTGGAATGCCTCGACAAGCAGTGGATGCTCCCCATACTTCTTATGGCACTGCTTCAACCTTTAACTCATTGCGAGCATCTCATTATCAGCTAACAGGTTCGTACAAAGGTGAAGGTGCCGAATATGCTGCTCGATACTGTGATTCGGCATACTCCATTCCTGATGCTCATAGTGGCTTATCAGCTGGACATTATGGTTTGATCAGTTCCTCTCCTATCACCCATACCCGGCAAACCACCTTGACAGGTGGAGCCTACGAATTGACAGGCTCCTCTCCTATTGCCCATACGCGGCACACCACTCAGCATATAAACTCAGCAACTGCTTCCTATGGATTGGGGGGCAGTACTTCTGTATCTTCACATTTGAGCCCATTAACCAAGCGGTATGGGGCTAGTAGTATGGCTGTAAATGGGAGGACTGGGCAGTTTGGATCAGCAGGAAGCCCTCCCCCTGCGCGCGTAACCAATGTGAGCCCAAATTCTTATGTGTCCGGTGATCCACTGAGAATGGCTAATCACAAGGATAGGCCAGTTTCTTCAAGTAGTGGCTATGGCACACATACTAATCAGTACCAGCCTTCCATTTATCACCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

504

Amino Acids

55.6

Weight (kDa)

9.72

Isoelectric Point (pI)

49.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 3 - 225 5.7e-66 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 304, 1031
AccB7I CCANNNNNTGG 1 cut(s) 917
AccI GTMKAC 1 cut(s) 873
AccII CGCG 3 cut(s) 1207, 1375, 1377
AciI CCGC 4 cut(s) 140, 290, 1207, 1300
AclWI GGATC 4 cut(s) 503, 788, 1357, 1409
AcsI RAATTY 1 cut(s) 1396
AcuI CTGAAG 2 cut(s) 144, 762
AcyI GRCGYC 1 cut(s) 305
AfaI GTAC 5 cut(s) 733, 902, 1019, 1264, 1490
AfiI CCNNNNNNNGG 5 cut(s) 105, 836, 917, 1143, 1206
AflII CTTAAG 1 cut(s) 715
AgsI TTSAA 8 cut(s) 271, 359, 416, 463, 581, 602, 972, 1458
AleI CACNNNNGTG 1 cut(s) 717
Alw21I GWGCWC 1 cut(s) 829
Alw26I GTCTC 1 cut(s) 327
AlwI GGATC 4 cut(s) 503, 788, 1357, 1409
AlwNI CAGNNNCTG 2 cut(s) 803, 1238
AoxI GGCC 3 cut(s) 107, 119, 1445
ApeKI GCWGC 4 cut(s) 217, 530, 800, 1043
ApoI RAATTY 1 cut(s) 1396
Asp700I GAANNNNTTC 1 cut(s) 814
AspLEI GCGC 4 cut(s) 307, 636, 1375, 1377
AsuC2I CCSGG 1 cut(s) 1144
AsuHPI GGTGA 6 cut(s) 154, 257, 1037, 1126, 1424, 1499
AxyI CCTNAGG 1 cut(s) 696
BaeI ACNNNNGTAYC 2 cut(s) 1254, 1287
BanI GGYRCC 2 cut(s) 304, 1031
BanII GRGCYC 2 cut(s) 1289, 1394
BauI CACGAG 1 cut(s) 687
Bbv12I GWGCWC 1 cut(s) 829
BbvI GCAGC 4 cut(s) 229, 517, 787, 1030
BccI CCATC 2 cut(s) 862, 919
BceAI ACGGC 1 cut(s) 94
BcgI CGANNNNNNTGC 2 cut(s) 1025, 1059
BclI TGATCA 1 cut(s) 1116
BcnI CCSGG 1 cut(s) 1144
BcoDI GTCTC 1 cut(s) 327
BfaI CTAG 2 cut(s) 174, 1311
BfoI RGCGCY 1 cut(s) 308
BfrI CTTAAG 1 cut(s) 715
BisI GCNGC 5 cut(s) 218, 531, 801, 1044, 1208
BlsI GCNGC 5 cut(s) 219, 532, 802, 1045, 1209
BmcAI AGTACT 2 cut(s) 902, 1264
Bme1390I CCNGG 1 cut(s) 1144
BmiI GGNNCC 4 cut(s) 306, 1033, 1168, 1186
BmrFI CCNGG 1 cut(s) 1144
BmrI ACTGGG 1 cut(s) 1347
BmsI GCATC 9 cut(s) 369, 469, 517, 563, 645, 790, 931, 1001, 1069
BmuI ACTGGG 1 cut(s) 1347
BpmI CTGGAG 1 cut(s) 218
BpuEI CTTGAG 2 cut(s) 407, 663
BpuMI CCSGG 1 cut(s) 1144
BsaHI GRCGYC 1 cut(s) 305
BsaI GGTCTC 1 cut(s) 327
BsaJI CCNNGG 1 cut(s) 889
BsaWI WCCGGW 1 cut(s) 1409
BsaXI ACNNNNNCTCC 2 cut(s) 58, 88
Bsc4I CCNNNNNNNGG 5 cut(s) 105, 836, 917, 1143, 1206
Bse1I ACTGG 4 cut(s) 369, 869, 1342, 1448
Bse21I CCTNAGG 1 cut(s) 696
Bse3DI GCAATG 1 cut(s) 983
BseDI CCNNGG 1 cut(s) 889
BseGI GGATG 3 cut(s) 484, 532, 946
BseLI CCNNNNNNNGG 5 cut(s) 105, 836, 917, 1143, 1206
BseMI GCAATG 1 cut(s) 983
BseMII CTCAG 7 cut(s) 44, 609, 640, 687, 1232, 1245, 1412
BseNI ACTGG 4 cut(s) 369, 869, 1342, 1448
BsePI GCGCGC 1 cut(s) 1373
BseRI GAGGAG 2 cut(s) 104, 1177
BseXI GCAGC 4 cut(s) 229, 517, 787, 1030
BsgI GTGCAG 1 cut(s) 915
Bsh1236I CGCG 3 cut(s) 1207, 1375, 1377
BshFI GGCC 3 cut(s) 109, 121, 1447
BshNI GGYRCC 2 cut(s) 304, 1031
BsiHKAI GWGCWC 1 cut(s) 829
BsiSI CCGG 3 cut(s) 308, 1144, 1410
BslFI GGGAC 1 cut(s) 677
BslI CCNNNNNNNGG 5 cut(s) 105, 836, 917, 1143, 1206
BsmAI GTCTC 1 cut(s) 327
BsmFI GGGAC 1 cut(s) 677
BsmI GAATGC 1 cut(s) 927
BsnI GGCC 3 cut(s) 109, 121, 1447
Bso31I GGTCTC 1 cut(s) 327
Bsp1286I GDGCHC 3 cut(s) 829, 1289, 1394
Bsp143I GATC 5 cut(s) 508, 793, 1116, 1349, 1414
BspACI CCGC 4 cut(s) 140, 290, 1207, 1300
BspANI GGCC 3 cut(s) 109, 121, 1447
BspCNI CTCAG 7 cut(s) 45, 610, 639, 688, 1231, 1244, 1413
BspFNI CGCG 3 cut(s) 1207, 1375, 1377
BspLI GGNNCC 4 cut(s) 306, 1033, 1168, 1186
BspPI GGATC 4 cut(s) 503, 788, 1357, 1409
BspT107I GGYRCC 2 cut(s) 304, 1031
BspTI CTTAAG 1 cut(s) 715
BspTNI GGTCTC 1 cut(s) 327
BsrDI GCAATG 1 cut(s) 983
BsrI ACTGG 4 cut(s) 369, 869, 1342, 1448
BssECI CCNNGG 1 cut(s) 889
BssHII GCGCGC 1 cut(s) 1373
BssMI GATC 5 cut(s) 508, 793, 1116, 1349, 1414
BssNI GRCGYC 1 cut(s) 305
BssSI CACGAG 1 cut(s) 687
Bst2BI CACGAG 1 cut(s) 687
Bst4CI ACNGT 3 cut(s) 609, 773, 1055
Bst6I CTCTTC 2 cut(s) 129, 255
BstACI GRCGYC 1 cut(s) 305
BstAFI CTTAAG 1 cut(s) 715
BstAPI GCANNNNNTGC 2 cut(s) 527, 941
BstC8I GCNNGC 3 cut(s) 644, 990, 1375
BstDEI CTNAG 7 cut(s) 53, 618, 626, 696, 1218, 1231, 1421
BstF5I GGATG 3 cut(s) 484, 532, 946
BstFNI CGCG 3 cut(s) 1207, 1375, 1377
BstH2I RGCGCY 1 cut(s) 308
BstHHI GCGC 4 cut(s) 307, 636, 1375, 1377
BstKTI GATC 5 cut(s) 511, 796, 1119, 1352, 1417
BstMAI GTCTC 1 cut(s) 327
BstMBI GATC 5 cut(s) 508, 793, 1116, 1349, 1414
BstMWI GCNNNNNNNGC 5 cut(s) 527, 582, 652, 941, 1040
BstSCI CCNGG 1 cut(s) 1142
BstUI CGCG 3 cut(s) 1207, 1375, 1377
BstV1I GCAGC 4 cut(s) 229, 517, 787, 1030
BstX2I RGATCY 2 cut(s) 508, 793
BstXI CCANNNNNNTGG 1 cut(s) 196
BstYI RGATCY 2 cut(s) 508, 793
Bsu36I CCTNAGG 1 cut(s) 696
BsuRI GGCC 3 cut(s) 109, 121, 1447
BtsCI GGATG 3 cut(s) 484, 532, 946
BtsI GCAGTG 2 cut(s) 942, 963
BtsIMutI CAGTG 3 cut(s) 942, 963, 1418
Cac8I GCNNGC 3 cut(s) 644, 990, 1375
CaiI CAGNNNCTG 2 cut(s) 803, 1238
CfoI GCGC 4 cut(s) 307, 636, 1375, 1377
Csp6I GTAC 5 cut(s) 732, 901, 1018, 1263, 1489
CviAII CATG 1 cut(s) 407
CviQI GTAC 5 cut(s) 732, 901, 1018, 1263, 1489
DdeI CTNAG 7 cut(s) 53, 618, 626, 696, 1218, 1231, 1421
DinI GGCGCC 1 cut(s) 306
DpnI GATC 5 cut(s) 510, 795, 1118, 1351, 1416
DpnII GATC 5 cut(s) 508, 793, 1116, 1349, 1414
Eam1104I CTCTTC 2 cut(s) 129, 255
EarI CTCTTC 2 cut(s) 129, 255
Eco147I AGGCCT 1 cut(s) 121
Eco24I GRGCYC 2 cut(s) 1289, 1394
Eco31I GGTCTC 1 cut(s) 327
Eco57I CTGAAG 2 cut(s) 144, 762
Eco81I CCTNAGG 1 cut(s) 696
EcoT22I ATGCAT 2 cut(s) 412, 578
EcoT38I GRGCYC 2 cut(s) 1289, 1394
EgeI GGCGCC 1 cut(s) 306
EheI GGCGCC 1 cut(s) 306
FaeI CATG 1 cut(s) 410
FalI AAGNNNNNCTT 2 cut(s) 498, 530
FaqI GGGAC 1 cut(s) 677
FatI CATG 1 cut(s) 406
FbaI TGATCA 1 cut(s) 1116
FblI GTMKAC 1 cut(s) 873
Fnu4HI GCNGC 5 cut(s) 218, 531, 801, 1044, 1208
FokI GGATG 3 cut(s) 491, 539, 953
FriOI GRGCYC 2 cut(s) 1289, 1394
Fsp4HI GCNGC 5 cut(s) 218, 531, 801, 1044, 1208
FspBI CTAG 2 cut(s) 174, 1311
GlaI GCGC 4 cut(s) 306, 635, 1374, 1376
GluI GCNGC 5 cut(s) 218, 531, 801, 1044, 1208
GsuI CTGGAG 1 cut(s) 218
HaeII RGCGCY 1 cut(s) 308
HaeIII GGCC 3 cut(s) 109, 121, 1447
HapII CCGG 3 cut(s) 308, 1144, 1410
HhaI GCGC 4 cut(s) 307, 636, 1375, 1377
Hin1I GRCGYC 1 cut(s) 305
Hin1II CATG 1 cut(s) 410
Hin6I GCGC 4 cut(s) 305, 634, 1373, 1375
HinP1I GCGC 4 cut(s) 305, 634, 1373, 1375
HindIII AAGCTT 1 cut(s) 590
HinfI GANTC 4 cut(s) 23, 399, 875, 1058
HpaII CCGG 3 cut(s) 308, 1144, 1410
HphI GGTGA 6 cut(s) 154, 257, 1037, 1126, 1424, 1499
Hpy166II GTNNAC 1 cut(s) 874
Hpy188I TCNGA 5 cut(s) 22, 349, 629, 789, 824
Hpy188III TCNNGA 3 cut(s) 197, 617, 1076
Hpy8I GTNNAC 1 cut(s) 874
Hpy99I CGWCG 1 cut(s) 22
HpyAV CCTTC 5 cut(s) 124, 157, 469, 1022, 1506
HpyCH4III ACNGT 3 cut(s) 609, 773, 1055
HpyCH4IV ACGT 1 cut(s) 730
HpyCH4V TGCA 7 cut(s) 152, 217, 410, 482, 495, 576, 896
HpyF10VI GCNNNNNNNGC 5 cut(s) 527, 582, 652, 941, 1040
HpyF3I CTNAG 7 cut(s) 53, 618, 626, 696, 1218, 1231, 1421
HpySE526I ACGT 1 cut(s) 730
Hsp92I GRCGYC 1 cut(s) 305
Hsp92II CATG 1 cut(s) 410
HspAI GCGC 4 cut(s) 305, 634, 1373, 1375
KasI GGCGCC 1 cut(s) 304
Ksp22I TGATCA 1 cut(s) 1116
Kzo9I GATC 5 cut(s) 508, 793, 1116, 1349, 1414
LmnI GCTCC 4 cut(s) 199, 949, 1166, 1190
Lsp1109I GCAGC 4 cut(s) 229, 517, 787, 1030
LweI GCATC 9 cut(s) 369, 469, 517, 563, 645, 790, 931, 1001, 1069
MaeI CTAG 2 cut(s) 174, 1311
MaeII ACGT 1 cut(s) 730
MaeIII GTNAC 2 cut(s) 673, 1378
MalI GATC 5 cut(s) 510, 795, 1118, 1351, 1416
MboI GATC 5 cut(s) 508, 793, 1116, 1349, 1414
MboII GAAGA 7 cut(s) 146, 272, 388, 778, 854, 1266, 1446
MflI RGATCY 2 cut(s) 508, 793
MhlI GDGCHC 3 cut(s) 829, 1289, 1394
MluCI AATT 2 cut(s) 1175, 1396
Mly113I GGCGCC 1 cut(s) 305
MlyI GAGTC 2 cut(s) 32, 869
MmeI TCCRAC 2 cut(s) 66, 327
Mph1103I ATGCAT 2 cut(s) 412, 578
MroXI GAANNNNTTC 1 cut(s) 814
MseI TTAA 6 cut(s) 450, 516, 716, 747, 978, 1292
MslI CAYNNNNRTG 2 cut(s) 157, 717
MspA1I CMGCKG 4 cut(s) 646, 800, 917, 1100
MspCI CTTAAG 1 cut(s) 715
MspI CCGG 3 cut(s) 308, 1144, 1410
MspR9I CCNGG 1 cut(s) 1144
Mva1269I GAATGC 1 cut(s) 927
MvnI CGCG 3 cut(s) 1207, 1375, 1377
MwoI GCNNNNNNNGC 5 cut(s) 527, 582, 652, 941, 1040
NarI GGCGCC 1 cut(s) 305
NciI CCSGG 1 cut(s) 1144
NdeII GATC 5 cut(s) 508, 793, 1116, 1349, 1414
NlaIII CATG 1 cut(s) 410
NlaIV GGNNCC 4 cut(s) 306, 1033, 1168, 1186
NmeAIII GCCGAG 1 cut(s) 914
NsiI ATGCAT 2 cut(s) 412, 578
OliI CACNNNNGTG 1 cut(s) 717
PauI GCGCGC 1 cut(s) 1373
PceI AGGCCT 1 cut(s) 121
PctI GAATGC 1 cut(s) 927
PdmI GAANNNNTTC 1 cut(s) 814
PfeI GAWTC 2 cut(s) 399, 1058
PflMI CCANNNNNTGG 1 cut(s) 917
PkrI GCNGC 5 cut(s) 219, 532, 802, 1045, 1209
PleI GAGTC 2 cut(s) 31, 869
PluTI GGCGCC 1 cut(s) 308
PpsI GAGTC 2 cut(s) 31, 869
PspN4I GGNNCC 4 cut(s) 306, 1033, 1168, 1186
PstNI CAGNNNCTG 2 cut(s) 803, 1238
PsuI RGATCY 2 cut(s) 508, 793
PteI GCGCGC 1 cut(s) 1373
PvuII CAGCTG 4 cut(s) 646, 800, 917, 1100
RsaI GTAC 5 cut(s) 733, 902, 1019, 1264, 1490
RsaNI GTAC 5 cut(s) 732, 901, 1018, 1263, 1489
RseI CAYNNNNRTG 2 cut(s) 157, 717
SaqAI TTAA 6 cut(s) 450, 516, 716, 747, 978, 1292
SatI GCNGC 5 cut(s) 218, 531, 801, 1044, 1208
Sau3AI GATC 5 cut(s) 508, 793, 1116, 1349, 1414
ScaI AGTACT 2 cut(s) 902, 1264
SchI GAGTC 2 cut(s) 32, 869
ScrFI CCNGG 1 cut(s) 1144
SduI GDGCHC 3 cut(s) 829, 1289, 1394
SfaNI GCATC 9 cut(s) 369, 469, 517, 563, 645, 790, 931, 1001, 1069
SfoI GGCGCC 1 cut(s) 306
SmiMI CAYNNNNRTG 2 cut(s) 157, 717
SmlI CTYRAG 3 cut(s) 386, 678, 715
SmoI CTYRAG 3 cut(s) 386, 678, 715
Sse9I AATT 2 cut(s) 1175, 1396
SseBI AGGCCT 1 cut(s) 121
SsiI CCGC 4 cut(s) 140, 290, 1207, 1300
SspDI GGCGCC 1 cut(s) 304
SspMI CTAG 2 cut(s) 174, 1311
StuI AGGCCT 1 cut(s) 121
StyD4I CCNGG 1 cut(s) 1142
TaaI ACNGT 3 cut(s) 609, 773, 1055
TaiI ACGT 1 cut(s) 733
TaqI TCGA 3 cut(s) 26, 928, 1048
TasI AATT 2 cut(s) 1175, 1396
TatI WGTACW 2 cut(s) 900, 1262
TauI GCSGC 1 cut(s) 1210
TfiI GAWTC 2 cut(s) 399, 1058
Tru1I TTAA 6 cut(s) 450, 516, 716, 747, 978, 1292
Tru9I TTAA 6 cut(s) 450, 516, 716, 747, 978, 1292
TscAI CASTG 3 cut(s) 942, 970, 1425
TseI GCWGC 4 cut(s) 217, 530, 800, 1043
TspDTI ATGAA 3 cut(s) 195, 391, 395
TspGWI ACGGA 1 cut(s) 6
TspRI CASTG 3 cut(s) 942, 970, 1425
Van91I CCANNNNNTGG 1 cut(s) 917
Vha464I CTTAAG 1 cut(s) 715
XapI RAATTY 1 cut(s) 1396
XcmI CCANNNNNNNNNTGG 1 cut(s) 956
XmiI GTMKAC 1 cut(s) 873
XmnI GAANNNNTTC 1 cut(s) 814
XspI CTAG 2 cut(s) 174, 1311
ZrmI AGTACT 2 cut(s) 902, 1264
Zsp2I ATGCAT 2 cut(s) 412, 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.