Rorug02G0643600

FRIGIDA-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0012633
Physical Location & Seq
Forward (+)
75487091 .. 75490424
3334 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0643600.1

Sequence Viewer

Length: 570 bp
ATGAGGCCAAATTGGAATGAAAACCAGCCCAATCTAAGGTTAACTAGTTTACCAGGCCCAAACTCAACCTCAGGAGACAAGCTAAACGGCGTCGTCCTCTTTCTAATATATATACTTCATCAATCATCAATCATCAATCATCGTCCACTTTCCTTCTTCTCTGAGTCTGTGACCAACAGGGTGCTCTCTACCAACGCTGCAAATTTCTCAGTCCCCGATAGACTAAAAACCATGAGGAAATCGGTGAATCGTCAGTCGACGCCGGATGTTGAGGAAAATCAAGAAGACAAGGAGCCCAGTTTTCAAGAGCTCATCAACATCGAGTTGATTGAGAGCGGTGAAAAGGAGCGGTTAATGGAGCTACTGAGGGAGAGGCTAATTGAGTGTGGGTGGAAGGATGAAATGAAAGCTCTTTGCAGGTCATTCATAAAGAAAAAAGGAAGGAACAATGTTACTGTGGATGACCTTGTACATGTAATCACCCCAAAGGGCAGAGCCTCCATTCCTGATTCCGTAAAGGCAGAGCTTTTGCAAAGGATTCGTACGTTCCTGATGTCGGCAGCTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

189

Amino Acids

21.59

Weight (kDa)

8.95

Isoelectric Point (pI)

43.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EnY2 PF10163 104 - 184 2.9e-31 Transcription factor e(y)2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 408
AccBSI CCGCTC 2 cut(s) 336, 349
AccI GTMKAC 1 cut(s) 257
AciI CCGC 2 cut(s) 336, 349
AcsI RAATTY 1 cut(s) 202
AcyI GRCGYC 2 cut(s) 90, 260
AfaI GTAC 2 cut(s) 471, 544
AfiI CCNNNNNNNGG 2 cut(s) 36, 556
AflIII ACRYGT 1 cut(s) 472
AgsI TTSAA 1 cut(s) 305
AhlI ACTAGT 1 cut(s) 44
AjnI CCWGG 1 cut(s) 52
AluBI AGCT 6 cut(s) 82, 310, 361, 410, 526, 563
AluI AGCT 6 cut(s) 82, 310, 361, 410, 526, 563
Alw21I GWGCWC 2 cut(s) 186, 312
Alw26I GTCTC 1 cut(s) 69
AoxI GGCC 2 cut(s) 5, 55
ApeKI GCWGC 2 cut(s) 197, 560
ApoI RAATTY 1 cut(s) 202
AspS9I GGNCC 1 cut(s) 56
AsuHPI GGTGA 3 cut(s) 256, 350, 472
AxyI CCTNAGG 1 cut(s) 70
BanII GRGCYC 2 cut(s) 297, 312
BbsI GAAGAC 1 cut(s) 291
Bbv12I GWGCWC 2 cut(s) 186, 312
BbvI GCAGC 1 cut(s) 184
BceAI ACGGC 1 cut(s) 103
BcgI CGANNNNNNTGC 2 cut(s) 521, 555
BciT130I CCWGG 1 cut(s) 54
BcoDI GTCTC 1 cut(s) 69
BcuI ACTAGT 1 cut(s) 44
BfaI CTAG 1 cut(s) 45
BfuAI ACCTGC 1 cut(s) 408
BisI GCNGC 2 cut(s) 198, 561
BlsI GCNGC 2 cut(s) 199, 562
Bme1390I CCNGG 1 cut(s) 54
BmgT120I GGNCC 1 cut(s) 56
BmiI GGNNCC 1 cut(s) 294
BmrFI CCNGG 1 cut(s) 54
BmrI ACTGGG 1 cut(s) 291
BmuI ACTGGG 1 cut(s) 291
BpiI GAAGAC 1 cut(s) 291
BsaHI GRCGYC 2 cut(s) 90, 260
Bsc4I CCNNNNNNNGG 2 cut(s) 36, 556
Bse1I ACTGG 1 cut(s) 297
Bse21I CCTNAGG 1 cut(s) 70
BseBI CCWGG 1 cut(s) 54
BseGI GGATG 3 cut(s) 271, 403, 466
BseLI CCNNNNNNNGG 2 cut(s) 36, 556
BseMII CTCAG 4 cut(s) 84, 153, 222, 356
BseNI ACTGG 1 cut(s) 297
BseXI GCAGC 1 cut(s) 184
BshFI GGCC 2 cut(s) 7, 57
BsiHKAI GWGCWC 2 cut(s) 186, 312
BsiSI CCGG 1 cut(s) 263
BsiWI CGTACG 1 cut(s) 542
BslFI GGGAC 1 cut(s) 197
BslI CCNNNNNNNGG 2 cut(s) 36, 556
BsmAI GTCTC 1 cut(s) 69
BsmFI GGGAC 1 cut(s) 197
BsnI GGCC 2 cut(s) 7, 57
Bsp1286I GDGCHC 3 cut(s) 186, 297, 312
Bsp1407I TGTACA 1 cut(s) 469
BspACI CCGC 2 cut(s) 336, 349
BspANI GGCC 2 cut(s) 7, 57
BspCNI CTCAG 4 cut(s) 83, 154, 221, 357
BspLI GGNNCC 1 cut(s) 294
BspMI ACCTGC 1 cut(s) 408
BsrBI CCGCTC 2 cut(s) 336, 349
BsrGI TGTACA 1 cut(s) 469
BsrI ACTGG 1 cut(s) 297
BssNI GRCGYC 2 cut(s) 90, 260
Bst2UI CCWGG 1 cut(s) 54
Bst4CI ACNGT 1 cut(s) 457
BstACI GRCGYC 2 cut(s) 90, 260
BstAUI TGTACA 1 cut(s) 469
BstDEI CTNAG 5 cut(s) 35, 70, 162, 208, 365
BstF5I GGATG 3 cut(s) 271, 403, 466
BstMAI GTCTC 1 cut(s) 69
BstNI CCWGG 1 cut(s) 54
BstNSI RCATGY 1 cut(s) 476
BstSCI CCNGG 1 cut(s) 52
BstV1I GCAGC 1 cut(s) 184
BstV2I GAAGAC 1 cut(s) 291
Bsu36I CCTNAGG 1 cut(s) 70
BsuRI GGCC 2 cut(s) 7, 57
BtsCI GGATG 3 cut(s) 271, 403, 466
BveI ACCTGC 1 cut(s) 408
Cfr13I GGNCC 1 cut(s) 56
CseI GACGC 2 cut(s) 79, 268
Csp6I GTAC 2 cut(s) 470, 543
CviAII CATG 2 cut(s) 232, 473
CviQI GTAC 2 cut(s) 470, 543
DdeI CTNAG 5 cut(s) 35, 70, 162, 208, 365
Ecl136II GAGCTC 1 cut(s) 310
Eco24I GRGCYC 2 cut(s) 297, 312
Eco53kI GAGCTC 1 cut(s) 310
Eco81I CCTNAGG 1 cut(s) 70
EcoICRI GAGCTC 1 cut(s) 310
EcoRII CCWGG 1 cut(s) 52
EcoT38I GRGCYC 2 cut(s) 297, 312
FaeI CATG 2 cut(s) 235, 476
FaiI YATR 6 cut(s) 109, 111, 113, 233, 428, 474
FaqI GGGAC 1 cut(s) 197
FatI CATG 2 cut(s) 231, 472
FblI GTMKAC 1 cut(s) 257
Fnu4HI GCNGC 2 cut(s) 198, 561
FokI GGATG 3 cut(s) 278, 410, 473
FriOI GRGCYC 2 cut(s) 297, 312
Fsp4HI GCNGC 2 cut(s) 198, 561
FspBI CTAG 1 cut(s) 45
GluI GCNGC 2 cut(s) 198, 561
HaeIII GGCC 2 cut(s) 7, 57
HapII CCGG 1 cut(s) 263
HgaI GACGC 2 cut(s) 79, 268
Hin1I GRCGYC 2 cut(s) 90, 260
Hin1II CATG 2 cut(s) 235, 476
HincII GTYRAC 2 cut(s) 42, 258
HindII GTYRAC 2 cut(s) 42, 258
HinfI GANTC 4 cut(s) 164, 247, 509, 538
HpaI GTTAAC 1 cut(s) 42
HpaII CCGG 1 cut(s) 263
HphI GGTGA 3 cut(s) 256, 350, 472
Hpy166II GTNNAC 4 cut(s) 42, 50, 146, 258
Hpy188I TCNGA 1 cut(s) 163
Hpy188III TCNNGA 5 cut(s) 72, 281, 305, 506, 550
Hpy8I GTNNAC 4 cut(s) 42, 50, 146, 258
Hpy99I CGWCG 2 cut(s) 95, 262
HpyAV CCTTC 3 cut(s) 163, 388, 435
HpyCH4III ACNGT 1 cut(s) 457
HpyCH4IV ACGT 1 cut(s) 545
HpyCH4V TGCA 3 cut(s) 200, 417, 532
HpyF3I CTNAG 5 cut(s) 35, 70, 162, 208, 365
HpySE526I ACGT 1 cut(s) 545
Hsp92I GRCGYC 2 cut(s) 90, 260
Hsp92II CATG 2 cut(s) 235, 476
KspAI GTTAAC 1 cut(s) 42
LmnI GCTCC 3 cut(s) 292, 346, 358
Lsp1109I GCAGC 1 cut(s) 184
MaeI CTAG 1 cut(s) 45
MaeII ACGT 1 cut(s) 545
MaeIII GTNAC 2 cut(s) 169, 451
MbiI CCGCTC 2 cut(s) 336, 349
MboII GAAGA 2 cut(s) 148, 296
MhlI GDGCHC 3 cut(s) 186, 297, 312
MluCI AATT 3 cut(s) 10, 202, 378
MlyI GAGTC 1 cut(s) 173
MnlI CCTC 7 cut(s) 79, 107, 228, 265, 360, 366, 508
MseI TTAA 3 cut(s) 41, 353, 568
MspI CCGG 1 cut(s) 263
MspR9I CCNGG 1 cut(s) 54
MvaI CCWGG 1 cut(s) 54
NlaIII CATG 2 cut(s) 235, 476
NlaIV GGNNCC 1 cut(s) 294
NmuCI GTSAC 1 cut(s) 169
NspI RCATGY 1 cut(s) 476
PciI ACATGT 1 cut(s) 472
PfeI GAWTC 3 cut(s) 247, 509, 538
Pfl23II CGTACG 1 cut(s) 542
PkrI GCNGC 2 cut(s) 199, 562
PleI GAGTC 1 cut(s) 172
PpsI GAGTC 1 cut(s) 172
PscI ACATGT 1 cut(s) 472
Psp124BI GAGCTC 1 cut(s) 312
Psp6I CCWGG 1 cut(s) 52
PspGI CCWGG 1 cut(s) 52
PspLI CGTACG 1 cut(s) 542
PspN4I GGNNCC 1 cut(s) 294
PspPI GGNCC 1 cut(s) 56
RsaI GTAC 2 cut(s) 471, 544
RsaNI GTAC 2 cut(s) 470, 543
SacI GAGCTC 1 cut(s) 312
SalI GTCGAC 1 cut(s) 256
SaqAI TTAA 3 cut(s) 41, 353, 568
SatI GCNGC 2 cut(s) 198, 561
Sau96I GGNCC 1 cut(s) 56
SchI GAGTC 1 cut(s) 173
ScrFI CCNGG 1 cut(s) 54
SduI GDGCHC 3 cut(s) 186, 297, 312
SpeI ACTAGT 1 cut(s) 44
Sse9I AATT 3 cut(s) 10, 202, 378
SsiI CCGC 2 cut(s) 336, 349
SspMI CTAG 1 cut(s) 45
SstI GAGCTC 1 cut(s) 312
StyD4I CCNGG 1 cut(s) 52
TaaI ACNGT 1 cut(s) 457
TaiI ACGT 1 cut(s) 548
TaqI TCGA 2 cut(s) 257, 321
TasI AATT 3 cut(s) 10, 202, 378
TatI WGTACW 1 cut(s) 469
TfiI GAWTC 3 cut(s) 247, 509, 538
Tru1I TTAA 3 cut(s) 41, 353, 568
Tru9I TTAA 3 cut(s) 41, 353, 568
TseFI GTSAC 1 cut(s) 169
TseI GCWGC 2 cut(s) 197, 560
Tsp45I GTSAC 1 cut(s) 169
TspDTI ATGAA 5 cut(s) 33, 107, 414, 415, 419
TspGWI ACGGA 1 cut(s) 502
XapI RAATTY 1 cut(s) 202
XceI RCATGY 1 cut(s) 476
XmiI GTMKAC 1 cut(s) 257
XspI CTAG 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.