Rmu_sc0002823.1_g000005

FRIGIDA-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002823.1
OG0012633
Physical Location & Seq
Reverse (-)
30351 .. 33164
2814 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1476 bp
atgagctgtgagctgagtgttgttaggagaagttgtgtggttttgttggaggagatgaccaaagtgaggccgttgattaggcctgaagtgaaggaagaggcggtgagggtggcattggagtggaagggaaaggctagaaatgaagcgaccaatactctggagctttgggctttcttgcagcttgtgggtgcttttgggttggtttgtgagtttgatagggaagagattttcaagctgtttggtagcgtggcggtaaggaaacaggcgccggagttgtttaggtctcttggtttcggggatagagtgtcggagtttattcaaaaactggtatcacagaagatgcgacttgaggctattagattcattcatgcatttgaacagcttgacaagttccctcctatgcccctgcttaaagcacatttgaagttcgccaagaaggatgcaaagattagttgcaagagggggcaagatcctcttaaagcagaggatgctgccatagataaagaagtagtatctctaaaagctataatacgatgcattgaaagctacaagcttggagttgaaccacagtattctcctgagaacctcagaaagcgcatcagccagctgaaaaagcagaaaaaagagaagcaagttactcaagcaactcgtgtccctgaggttcaggggcaacacttgagtggaaagaaacgtactgcccctgaagttaaggctcaacccaataagaagaacagtaataagcatcatcggacagatccagctgctgttagaaatgcttctttcagagcaccaaccacaggacactcaatacacccatcttatcttcgtccagtagactcgtttgagagtcgaggtgcagagtactttataccatcagctggaatgcctcgacaagcagtggatgctccccatacttcttatggcactgcttcgacctttaactcattgcgagcatctcattatcagctaacaggttcatacaaaggtgaaggtgccgaatatgctgctcgatactgtgattcggcatactccattcctgatgctcatagtggcttatcagctggacattatggtttgatcagttcctctcctatcacccatacccggcaaaccaccttgacaggtggagcctacgaattgacaggctcctctcctattgcccatacgcggcacaccactcagcatataaactcagcaactgcttcctatggattggggggcagtacttctgtatcttcacatttgagcccattaaccaagcggtatggggctagtagtatggctgtaaatgggaggactgggcagtttggatcagcaggaagccctccccctgcgcgcgtaaccaatgtgagcccaaattcttatgtgtccggtgatccactgagaatggctaatcacaaggataggccagttccttcaagtagtggctatggcacacatactaatcagtaccagccttccatttatcacctttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

491

Amino Acids

54.05

Weight (kDa)

9.72

Isoelectric Point (pI)

47.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 5 - 212 4.1e-63 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 265, 992
AccB7I CCANNNNNTGG 1 cut(s) 878
AccI GTMKAC 1 cut(s) 834
AccII CGCG 3 cut(s) 1168, 1336, 1338
AciI CCGC 4 cut(s) 101, 251, 1168, 1261
AclWI GGATC 4 cut(s) 464, 749, 1318, 1370
AcsI RAATTY 1 cut(s) 1357
AcuI CTGAAG 2 cut(s) 105, 723
AcyI GRCGYC 1 cut(s) 266
AfaI GTAC 4 cut(s) 694, 863, 1225, 1451
AfiI CCNNNNNNNGG 5 cut(s) 66, 797, 878, 1104, 1167
AgsI TTSAA 7 cut(s) 232, 320, 377, 424, 542, 563, 1419
AleI CACNNNNGTG 1 cut(s) 678
Alw21I GWGCWC 1 cut(s) 790
Alw26I GTCTC 1 cut(s) 288
AlwI GGATC 4 cut(s) 464, 749, 1318, 1370
AlwNI CAGNNNCTG 2 cut(s) 764, 1199
AoxI GGCC 3 cut(s) 68, 80, 1406
ApeKI GCWGC 4 cut(s) 178, 491, 761, 1004
ApoI RAATTY 1 cut(s) 1357
Asp700I GAANNNNTTC 1 cut(s) 775
AspLEI GCGC 4 cut(s) 268, 597, 1336, 1338
AsuC2I CCSGG 1 cut(s) 1105
AsuHPI GGTGA 5 cut(s) 115, 998, 1087, 1385, 1460
AxyI CCTNAGG 1 cut(s) 657
BaeI ACNNNNGTAYC 2 cut(s) 1215, 1248
BanI GGYRCC 2 cut(s) 265, 992
BanII GRGCYC 2 cut(s) 1250, 1355
BauI CACGAG 1 cut(s) 648
Bbv12I GWGCWC 1 cut(s) 790
BbvI GCAGC 4 cut(s) 190, 478, 748, 991
BccI CCATC 2 cut(s) 823, 880
BceAI ACGGC 1 cut(s) 55
BcgI CGANNNNNNTGC 2 cut(s) 986, 1020
BclI TGATCA 1 cut(s) 1077
BcnI CCSGG 1 cut(s) 1105
BcoDI GTCTC 1 cut(s) 288
BfaI CTAG 2 cut(s) 135, 1272
BfoI RGCGCY 1 cut(s) 269
BisI GCNGC 5 cut(s) 179, 492, 762, 1005, 1169
BlsI GCNGC 5 cut(s) 180, 493, 763, 1006, 1170
BmcAI AGTACT 2 cut(s) 863, 1225
Bme1390I CCNGG 1 cut(s) 1105
BmiI GGNNCC 4 cut(s) 267, 994, 1129, 1147
BmrFI CCNGG 1 cut(s) 1105
BmrI ACTGGG 1 cut(s) 1308
BmsI GCATC 9 cut(s) 330, 430, 478, 524, 606, 751, 892, 962, 1030
BmuI ACTGGG 1 cut(s) 1308
BpmI CTGGAG 1 cut(s) 179
BpuEI CTTGAG 3 cut(s) 368, 624, 697
BpuMI CCSGG 1 cut(s) 1105
BsaHI GRCGYC 1 cut(s) 266
BsaI GGTCTC 1 cut(s) 288
BsaWI WCCGGW 1 cut(s) 1370
BsaXI ACNNNNNCTCC 2 cut(s) 19, 49
Bsc4I CCNNNNNNNGG 5 cut(s) 66, 797, 878, 1104, 1167
Bse1I ACTGG 4 cut(s) 330, 830, 1303, 1409
Bse21I CCTNAGG 1 cut(s) 657
Bse3DI GCAATG 1 cut(s) 944
BseGI GGATG 3 cut(s) 445, 493, 907
BseLI CCNNNNNNNGG 5 cut(s) 66, 797, 878, 1104, 1167
BseMI GCAATG 1 cut(s) 944
BseMII CTCAG 7 cut(s) 5, 570, 601, 648, 1193, 1206, 1373
BseNI ACTGG 4 cut(s) 330, 830, 1303, 1409
BsePI GCGCGC 1 cut(s) 1334
BseRI GAGGAG 2 cut(s) 65, 1138
BseXI GCAGC 4 cut(s) 190, 478, 748, 991
BsgI GTGCAG 1 cut(s) 876
Bsh1236I CGCG 3 cut(s) 1168, 1336, 1338
BshFI GGCC 3 cut(s) 70, 82, 1408
BshNI GGYRCC 2 cut(s) 265, 992
BsiHKAI GWGCWC 1 cut(s) 790
BsiSI CCGG 3 cut(s) 269, 1105, 1371
BslFI GGGAC 1 cut(s) 638
BslI CCNNNNNNNGG 5 cut(s) 66, 797, 878, 1104, 1167
BsmAI GTCTC 1 cut(s) 288
BsmFI GGGAC 1 cut(s) 638
BsmI GAATGC 1 cut(s) 888
BsnI GGCC 3 cut(s) 70, 82, 1408
Bso31I GGTCTC 1 cut(s) 288
Bsp1286I GDGCHC 3 cut(s) 790, 1250, 1355
Bsp143I GATC 5 cut(s) 469, 754, 1077, 1310, 1375
BspACI CCGC 4 cut(s) 101, 251, 1168, 1261
BspANI GGCC 3 cut(s) 70, 82, 1408
BspCNI CTCAG 7 cut(s) 6, 571, 600, 649, 1192, 1205, 1374
BspFNI CGCG 3 cut(s) 1168, 1336, 1338
BspLI GGNNCC 4 cut(s) 267, 994, 1129, 1147
BspPI GGATC 4 cut(s) 464, 749, 1318, 1370
BspT107I GGYRCC 2 cut(s) 265, 992
BspTNI GGTCTC 1 cut(s) 288
BsrDI GCAATG 1 cut(s) 944
BsrI ACTGG 4 cut(s) 330, 830, 1303, 1409
BssHII GCGCGC 1 cut(s) 1334
BssMI GATC 5 cut(s) 469, 754, 1077, 1310, 1375
BssNI GRCGYC 1 cut(s) 266
BssSI CACGAG 1 cut(s) 648
Bst2BI CACGAG 1 cut(s) 648
Bst4CI ACNGT 3 cut(s) 570, 734, 1016
Bst6I CTCTTC 2 cut(s) 90, 216
BstACI GRCGYC 1 cut(s) 266
BstAPI GCANNNNNTGC 2 cut(s) 488, 902
BstC8I GCNNGC 3 cut(s) 605, 951, 1336
BstDEI CTNAG 7 cut(s) 14, 579, 587, 657, 1179, 1192, 1382
BstF5I GGATG 3 cut(s) 445, 493, 907
BstFNI CGCG 3 cut(s) 1168, 1336, 1338
BstH2I RGCGCY 1 cut(s) 269
BstHHI GCGC 4 cut(s) 268, 597, 1336, 1338
BstKTI GATC 5 cut(s) 472, 757, 1080, 1313, 1378
BstMAI GTCTC 1 cut(s) 288
BstMBI GATC 5 cut(s) 469, 754, 1077, 1310, 1375
BstMWI GCNNNNNNNGC 5 cut(s) 488, 543, 613, 902, 1001
BstSCI CCNGG 1 cut(s) 1103
BstUI CGCG 3 cut(s) 1168, 1336, 1338
BstV1I GCAGC 4 cut(s) 190, 478, 748, 991
BstX2I RGATCY 2 cut(s) 469, 754
BstXI CCANNNNNNTGG 1 cut(s) 157
BstYI RGATCY 2 cut(s) 469, 754
Bsu36I CCTNAGG 1 cut(s) 657
BsuRI GGCC 3 cut(s) 70, 82, 1408
BtsCI GGATG 3 cut(s) 445, 493, 907
BtsI GCAGTG 2 cut(s) 903, 924
BtsIMutI CAGTG 3 cut(s) 903, 924, 1379
Cac8I GCNNGC 3 cut(s) 605, 951, 1336
CaiI CAGNNNCTG 2 cut(s) 764, 1199
CfoI GCGC 4 cut(s) 268, 597, 1336, 1338
Csp6I GTAC 4 cut(s) 693, 862, 1224, 1450
CviAII CATG 1 cut(s) 368
CviQI GTAC 4 cut(s) 693, 862, 1224, 1450
DdeI CTNAG 7 cut(s) 14, 579, 587, 657, 1179, 1192, 1382
DinI GGCGCC 1 cut(s) 267
DpnI GATC 5 cut(s) 471, 756, 1079, 1312, 1377
DpnII GATC 5 cut(s) 469, 754, 1077, 1310, 1375
Eam1104I CTCTTC 2 cut(s) 90, 216
EarI CTCTTC 2 cut(s) 90, 216
Eco147I AGGCCT 1 cut(s) 82
Eco24I GRGCYC 2 cut(s) 1250, 1355
Eco31I GGTCTC 1 cut(s) 288
Eco57I CTGAAG 2 cut(s) 105, 723
Eco81I CCTNAGG 1 cut(s) 657
EcoT22I ATGCAT 2 cut(s) 373, 539
EcoT38I GRGCYC 2 cut(s) 1250, 1355
EgeI GGCGCC 1 cut(s) 267
EheI GGCGCC 1 cut(s) 267
FaeI CATG 1 cut(s) 371
FalI AAGNNNNNCTT 2 cut(s) 459, 491
FaqI GGGAC 1 cut(s) 638
FatI CATG 1 cut(s) 367
FbaI TGATCA 1 cut(s) 1077
FblI GTMKAC 1 cut(s) 834
Fnu4HI GCNGC 5 cut(s) 179, 492, 762, 1005, 1169
FokI GGATG 3 cut(s) 452, 500, 914
FriOI GRGCYC 2 cut(s) 1250, 1355
Fsp4HI GCNGC 5 cut(s) 179, 492, 762, 1005, 1169
FspBI CTAG 2 cut(s) 135, 1272
GlaI GCGC 4 cut(s) 267, 596, 1335, 1337
GluI GCNGC 5 cut(s) 179, 492, 762, 1005, 1169
GsuI CTGGAG 1 cut(s) 179
HaeII RGCGCY 1 cut(s) 269
HaeIII GGCC 3 cut(s) 70, 82, 1408
HapII CCGG 3 cut(s) 269, 1105, 1371
HhaI GCGC 4 cut(s) 268, 597, 1336, 1338
Hin1I GRCGYC 1 cut(s) 266
Hin1II CATG 1 cut(s) 371
Hin6I GCGC 4 cut(s) 266, 595, 1334, 1336
HinP1I GCGC 4 cut(s) 266, 595, 1334, 1336
HindIII AAGCTT 1 cut(s) 551
HinfI GANTC 4 cut(s) 360, 836, 847, 1019
HpaII CCGG 3 cut(s) 269, 1105, 1371
HphI GGTGA 5 cut(s) 115, 998, 1087, 1385, 1460
Hpy166II GTNNAC 1 cut(s) 835
Hpy188I TCNGA 4 cut(s) 310, 590, 750, 785
Hpy188III TCNNGA 3 cut(s) 158, 578, 1037
Hpy8I GTNNAC 1 cut(s) 835
HpyAV CCTTC 6 cut(s) 85, 118, 430, 983, 1425, 1467
HpyCH4III ACNGT 3 cut(s) 570, 734, 1016
HpyCH4IV ACGT 1 cut(s) 691
HpyCH4V TGCA 6 cut(s) 178, 371, 443, 456, 537, 857
HpyF10VI GCNNNNNNNGC 5 cut(s) 488, 543, 613, 902, 1001
HpyF3I CTNAG 7 cut(s) 14, 579, 587, 657, 1179, 1192, 1382
HpySE526I ACGT 1 cut(s) 691
Hsp92I GRCGYC 1 cut(s) 266
Hsp92II CATG 1 cut(s) 371
HspAI GCGC 4 cut(s) 266, 595, 1334, 1336
KasI GGCGCC 1 cut(s) 265
Ksp22I TGATCA 1 cut(s) 1077
Kzo9I GATC 5 cut(s) 469, 754, 1077, 1310, 1375
LmnI GCTCC 4 cut(s) 160, 910, 1127, 1151
Lsp1109I GCAGC 4 cut(s) 190, 478, 748, 991
LweI GCATC 9 cut(s) 330, 430, 478, 524, 606, 751, 892, 962, 1030
MaeI CTAG 2 cut(s) 135, 1272
MaeII ACGT 1 cut(s) 691
MaeIII GTNAC 2 cut(s) 634, 1339
MalI GATC 5 cut(s) 471, 756, 1079, 1312, 1377
MboI GATC 5 cut(s) 469, 754, 1077, 1310, 1375
MboII GAAGA 6 cut(s) 107, 233, 349, 739, 815, 1227
MflI RGATCY 2 cut(s) 469, 754
MhlI GDGCHC 3 cut(s) 790, 1250, 1355
MluCI AATT 2 cut(s) 1136, 1357
Mly113I GGCGCC 1 cut(s) 266
MlyI GAGTC 2 cut(s) 830, 856
MmeI TCCRAC 2 cut(s) 27, 288
Mph1103I ATGCAT 2 cut(s) 373, 539
MroXI GAANNNNTTC 1 cut(s) 775
MseI TTAA 5 cut(s) 411, 477, 708, 939, 1253
MslI CAYNNNNRTG 2 cut(s) 118, 678
MspA1I CMGCKG 4 cut(s) 607, 761, 878, 1061
MspI CCGG 3 cut(s) 269, 1105, 1371
MspR9I CCNGG 1 cut(s) 1105
Mva1269I GAATGC 1 cut(s) 888
MvnI CGCG 3 cut(s) 1168, 1336, 1338
MwoI GCNNNNNNNGC 5 cut(s) 488, 543, 613, 902, 1001
NarI GGCGCC 1 cut(s) 266
NciI CCSGG 1 cut(s) 1105
NdeII GATC 5 cut(s) 469, 754, 1077, 1310, 1375
NlaIII CATG 1 cut(s) 371
NlaIV GGNNCC 4 cut(s) 267, 994, 1129, 1147
NsiI ATGCAT 2 cut(s) 373, 539
OliI CACNNNNGTG 1 cut(s) 678
PauI GCGCGC 1 cut(s) 1334
PceI AGGCCT 1 cut(s) 82
PctI GAATGC 1 cut(s) 888
PdmI GAANNNNTTC 1 cut(s) 775
PfeI GAWTC 2 cut(s) 360, 1019
PflMI CCANNNNNTGG 1 cut(s) 878
PkrI GCNGC 5 cut(s) 180, 493, 763, 1006, 1170
PleI GAGTC 2 cut(s) 830, 855
PluTI GGCGCC 1 cut(s) 269
PpsI GAGTC 2 cut(s) 830, 855
PspN4I GGNNCC 4 cut(s) 267, 994, 1129, 1147
PstNI CAGNNNCTG 2 cut(s) 764, 1199
PsuI RGATCY 2 cut(s) 469, 754
PteI GCGCGC 1 cut(s) 1334
PvuII CAGCTG 4 cut(s) 607, 761, 878, 1061
RsaI GTAC 4 cut(s) 694, 863, 1225, 1451
RsaNI GTAC 4 cut(s) 693, 862, 1224, 1450
RseI CAYNNNNRTG 2 cut(s) 118, 678
SaqAI TTAA 5 cut(s) 411, 477, 708, 939, 1253
SatI GCNGC 5 cut(s) 179, 492, 762, 1005, 1169
Sau3AI GATC 5 cut(s) 469, 754, 1077, 1310, 1375
ScaI AGTACT 2 cut(s) 863, 1225
SchI GAGTC 2 cut(s) 830, 856
ScrFI CCNGG 1 cut(s) 1105
SduI GDGCHC 3 cut(s) 790, 1250, 1355
SfaNI GCATC 9 cut(s) 330, 430, 478, 524, 606, 751, 892, 962, 1030
SfoI GGCGCC 1 cut(s) 267
SmiMI CAYNNNNRTG 2 cut(s) 118, 678
SmlI CTYRAG 3 cut(s) 347, 639, 676
SmoI CTYRAG 3 cut(s) 347, 639, 676
Sse9I AATT 2 cut(s) 1136, 1357
SseBI AGGCCT 1 cut(s) 82
SsiI CCGC 4 cut(s) 101, 251, 1168, 1261
SspDI GGCGCC 1 cut(s) 265
SspMI CTAG 2 cut(s) 135, 1272
StuI AGGCCT 1 cut(s) 82
StyD4I CCNGG 1 cut(s) 1103
TaaI ACNGT 3 cut(s) 570, 734, 1016
TaiI ACGT 1 cut(s) 694
TaqI TCGA 4 cut(s) 850, 889, 932, 1009
TasI AATT 2 cut(s) 1136, 1357
TatI WGTACW 2 cut(s) 861, 1223
TauI GCSGC 1 cut(s) 1171
TfiI GAWTC 2 cut(s) 360, 1019
Tru1I TTAA 5 cut(s) 411, 477, 708, 939, 1253
Tru9I TTAA 5 cut(s) 411, 477, 708, 939, 1253
TscAI CASTG 3 cut(s) 903, 931, 1386
TseI GCWGC 4 cut(s) 178, 491, 761, 1004
TspDTI ATGAA 4 cut(s) 156, 352, 356, 966
TspRI CASTG 3 cut(s) 903, 931, 1386
Van91I CCANNNNNTGG 1 cut(s) 878
XapI RAATTY 1 cut(s) 1357
XcmI CCANNNNNNNNNTGG 1 cut(s) 917
XmiI GTMKAC 1 cut(s) 834
XmnI GAANNNNTTC 1 cut(s) 775
XspI CTAG 2 cut(s) 135, 1272
ZrmI AGTACT 2 cut(s) 863, 1225
Zsp2I ATGCAT 2 cut(s) 373, 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.