Rmu_sc0002823.1_g000006

FRIGIDA-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002823.1
OG0012633
Physical Location & Seq
Reverse (-)
33172 .. 33906
735 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 735 bp
atgtccaccgccgtagacaaagtcttcggcgacgttccgatgagcccagaactccgcaaatctttcaacctcctcaagtcccacgcctccaaagttgccaactttaccctccaatggcaggacctcgaagatcacttacgctccatcgacgactccattcaatccaaaatcaaccagctccagaaatccaaacaagcccaattgaaatccgaacccaattctcaacaatccacccaggtcaattccgctgtcgaatcggcgaaaacgcaactggattgcctcaacacccaattcaaagctgaagtttcttcgtccgaatccgaaagcttggatttcaatggcgtggtggtgcacgatggagagggtttgctggtgttcatgaatgagcatttgaaagagaaggagccgtctcgcgatctcatcacagatgcgattagggcctctgtgggctctgggaagatagtgcttgaggcaatgaggtggttctatccgtcggagtcgaataagggagaaatgagctgtgagctgagtgttgttaggagaagttgtgtggttttgttggaggagatgaccaaagtgaggcctttgattaggcctgaagtgaaggaagaggcggtgagggttgcattggagtggaagggaaaggctagaaatgaagcgaccaatactctggagctttgggctttcttgcagcttgtgggtgcttttgggttggtttccgtcggagtcgaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

244

Amino Acids

27.21

Weight (kDa)

5.43

Isoelectric Point (pI)

50.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 119 - 240 1.3e-26 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 15
AccII CGCG 1 cut(s) 414
AciI CCGC 4 cut(s) 9, 55, 246, 614
AcuI CTGAAG 2 cut(s) 321, 618
AfiI CCNNNNNNNGG 3 cut(s) 114, 118, 579
AgsI TTSAA 6 cut(s) 67, 161, 205, 295, 337, 394
AjnI CCWGG 1 cut(s) 234
AluBI AGCT 7 cut(s) 178, 299, 327, 519, 526, 676, 694
AluI AGCT 7 cut(s) 178, 299, 327, 519, 526, 676, 694
Alw21I GWGCWC 1 cut(s) 354
Alw26I GTCTC 1 cut(s) 414
Alw44I GTGCAC 1 cut(s) 350
AoxI GGCC 3 cut(s) 438, 581, 593
ApaLI GTGCAC 1 cut(s) 350
ApeKI GCWGC 1 cut(s) 691
ArsI GACNNNNNNTTYG 2 cut(s) 8, 40
AspS9I GGNCC 2 cut(s) 121, 438
AsuHPI GGTGA 1 cut(s) 628
AvaII GGWCC 1 cut(s) 121
BaeGI GKGCMC 1 cut(s) 354
BanII GRGCYC 2 cut(s) 47, 452
BarI GAAGNNNNNNTAC 2 cut(s) 120, 152
BbsI GAAGAC 1 cut(s) 16
Bbv12I GWGCWC 1 cut(s) 354
BbvI GCAGC 1 cut(s) 703
BccI CCATC 2 cut(s) 152, 350
BceAI ACGGC 1 cut(s) 391
BciT130I CCWGG 1 cut(s) 236
BcoDI GTCTC 1 cut(s) 414
BfaI CTAG 1 cut(s) 648
BisI GCNGC 1 cut(s) 692
BlsI GCNGC 1 cut(s) 693
Bme1390I CCNGG 1 cut(s) 236
Bme18I GGWCC 1 cut(s) 121
BmgT120I GGNCC 2 cut(s) 121, 438
BmiI GGNNCC 1 cut(s) 405
BmrFI CCNGG 1 cut(s) 236
BmsI GCATC 1 cut(s) 418
BpiI GAAGAC 1 cut(s) 16
BpmI CTGGAG 2 cut(s) 164, 692
BpuEI CTTGAG 2 cut(s) 59, 488
BsaJI CCNNGG 1 cut(s) 234
BsaXI ACNNNNNCTCC 4 cut(s) 125, 155, 532, 562
Bsc4I CCNNNNNNNGG 3 cut(s) 114, 118, 579
Bse1I ACTGG 1 cut(s) 276
Bse3DI GCAATG 1 cut(s) 480
BseBI CCWGG 1 cut(s) 236
BseDI CCNNGG 1 cut(s) 234
BseLI CCNNNNNNNGG 3 cut(s) 114, 118, 579
BseMI GCAATG 1 cut(s) 480
BseMII CTCAG 1 cut(s) 518
BseNI ACTGG 1 cut(s) 276
BseRI GAGGAG 2 cut(s) 62, 578
BseSI GKGCMC 1 cut(s) 354
BseXI GCAGC 1 cut(s) 703
Bsh1236I CGCG 1 cut(s) 414
BshFI GGCC 3 cut(s) 440, 583, 595
BsiHKAI GWGCWC 1 cut(s) 354
BslFI GGGAC 1 cut(s) 64
BslI CCNNNNNNNGG 3 cut(s) 114, 118, 579
BsmAI GTCTC 1 cut(s) 414
BsmBI CGTCTC 1 cut(s) 414
BsmFI GGGAC 1 cut(s) 64
BsnI GGCC 3 cut(s) 440, 583, 595
Bsp1286I GDGCHC 3 cut(s) 47, 354, 452
Bsp143I GATC 2 cut(s) 130, 415
Bsp68I TCGCGA 1 cut(s) 414
BspACI CCGC 4 cut(s) 9, 55, 246, 614
BspANI GGCC 3 cut(s) 440, 583, 595
BspCNI CTCAG 1 cut(s) 519
BspFNI CGCG 1 cut(s) 414
BspHI TCATGA 1 cut(s) 378
BspLI GGNNCC 1 cut(s) 405
BsrDI GCAATG 1 cut(s) 480
BsrI ACTGG 1 cut(s) 276
BssECI CCNNGG 1 cut(s) 234
BssMI GATC 2 cut(s) 130, 415
Bst2UI CCWGG 1 cut(s) 236
Bst6I CTCTTC 1 cut(s) 603
BstDEI CTNAG 1 cut(s) 527
BstFNI CGCG 1 cut(s) 414
BstKTI GATC 2 cut(s) 133, 418
BstMAI GTCTC 1 cut(s) 414
BstMBI GATC 2 cut(s) 130, 415
BstMWI GCNNNNNNNGC 1 cut(s) 437
BstNI CCWGG 1 cut(s) 236
BstSCI CCNGG 1 cut(s) 234
BstSLI GKGCMC 1 cut(s) 354
BstUI CGCG 1 cut(s) 414
BstV1I GCAGC 1 cut(s) 703
BstV2I GAAGAC 1 cut(s) 16
BstXI CCANNNNNNTGG 1 cut(s) 670
BsuRI GGCC 3 cut(s) 440, 583, 595
BtuMI TCGCGA 1 cut(s) 414
CciI TCATGA 1 cut(s) 378
Cfr13I GGNCC 2 cut(s) 121, 438
CviAII CATG 1 cut(s) 379
DdeI CTNAG 1 cut(s) 527
DpnI GATC 2 cut(s) 132, 417
DpnII GATC 2 cut(s) 130, 415
Eam1104I CTCTTC 1 cut(s) 603
EarI CTCTTC 1 cut(s) 603
Eco147I AGGCCT 2 cut(s) 583, 595
Eco24I GRGCYC 2 cut(s) 47, 452
Eco47I GGWCC 1 cut(s) 121
Eco57I CTGAAG 2 cut(s) 321, 618
EcoO109I RGGNCCY 2 cut(s) 121, 438
EcoRII CCWGG 1 cut(s) 234
EcoT38I GRGCYC 2 cut(s) 47, 452
Esp3I CGTCTC 1 cut(s) 414
FaeI CATG 1 cut(s) 382
FaiI YATR 1 cut(s) 380
FaqI GGGAC 1 cut(s) 64
FatI CATG 1 cut(s) 378
FblI GTMKAC 1 cut(s) 15
Fnu4HI GCNGC 1 cut(s) 692
FriOI GRGCYC 2 cut(s) 47, 452
Fsp4HI GCNGC 1 cut(s) 692
FspBI CTAG 1 cut(s) 648
GluI GCNGC 1 cut(s) 692
GsuI CTGGAG 2 cut(s) 164, 692
HaeIII GGCC 3 cut(s) 440, 583, 595
Hin1II CATG 1 cut(s) 382
HindIII AAGCTT 1 cut(s) 325
HinfI GANTC 5 cut(s) 152, 254, 317, 497, 726
HphI GGTGA 1 cut(s) 628
Hpy166II GTNNAC 3 cut(s) 6, 16, 352
Hpy188I TCNGA 6 cut(s) 39, 211, 316, 322, 496, 725
Hpy188III TCNNGA 4 cut(s) 181, 379, 413, 671
Hpy8I GTNNAC 3 cut(s) 6, 16, 352
Hpy99I CGWCG 4 cut(s) 35, 152, 496, 725
HpyAV CCTTC 3 cut(s) 394, 598, 631
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 3 cut(s) 352, 626, 691
HpyF10VI GCNNNNNNNGC 1 cut(s) 437
HpyF3I CTNAG 1 cut(s) 527
HpySE526I ACGT 1 cut(s) 33
Hsp92II CATG 1 cut(s) 382
Kzo9I GATC 2 cut(s) 130, 415
LmnI GCTCC 4 cut(s) 146, 183, 403, 673
Lsp1109I GCAGC 1 cut(s) 703
LweI GCATC 1 cut(s) 418
MaeI CTAG 1 cut(s) 648
MaeII ACGT 1 cut(s) 33
MalI GATC 2 cut(s) 132, 417
MboI GATC 2 cut(s) 130, 415
MboII GAAGA 5 cut(s) 16, 140, 300, 469, 620
MfeI CAATTG 1 cut(s) 200
MhlI GDGCHC 3 cut(s) 47, 354, 452
MluCI AATT 4 cut(s) 200, 217, 241, 290
MlyI GAGTC 3 cut(s) 146, 506, 735
MmeI TCCRAC 3 cut(s) 474, 540, 703
MslI CAYNNNNRTG 1 cut(s) 631
MspA1I CMGCKG 1 cut(s) 248
MspR9I CCNGG 1 cut(s) 236
MunI CAATTG 1 cut(s) 200
MvaI CCWGG 1 cut(s) 236
MvnI CGCG 1 cut(s) 414
MwoI GCNNNNNNNGC 1 cut(s) 437
NdeII GATC 2 cut(s) 130, 415
NlaIII CATG 1 cut(s) 382
NlaIV GGNNCC 1 cut(s) 405
NruI TCGCGA 1 cut(s) 414
PagI TCATGA 1 cut(s) 378
PceI AGGCCT 2 cut(s) 583, 595
PfeI GAWTC 2 cut(s) 254, 317
PflFI GACNNNGTC 1 cut(s) 20
PkrI GCNGC 1 cut(s) 693
PleI GAGTC 3 cut(s) 146, 505, 734
PpsI GAGTC 3 cut(s) 146, 505, 734
PpuMI RGGWCCY 1 cut(s) 121
Psp5II RGGWCCY 1 cut(s) 121
Psp6I CCWGG 1 cut(s) 234
PspGI CCWGG 1 cut(s) 234
PspN4I GGNNCC 1 cut(s) 405
PspPI GGNCC 2 cut(s) 121, 438
PspPPI RGGWCCY 1 cut(s) 121
PsyI GACNNNGTC 1 cut(s) 20
RruI TCGCGA 1 cut(s) 414
RseI CAYNNNNRTG 1 cut(s) 631
SatI GCNGC 1 cut(s) 692
Sau3AI GATC 2 cut(s) 130, 415
Sau96I GGNCC 2 cut(s) 121, 438
SchI GAGTC 3 cut(s) 146, 506, 735
ScrFI CCNGG 1 cut(s) 236
SduI GDGCHC 3 cut(s) 47, 354, 452
SfaNI GCATC 1 cut(s) 418
SinI GGWCC 1 cut(s) 121
SmiMI CAYNNNNRTG 1 cut(s) 631
SmlI CTYRAG 2 cut(s) 74, 467
SmoI CTYRAG 2 cut(s) 74, 467
Sse9I AATT 4 cut(s) 200, 217, 241, 290
SseBI AGGCCT 2 cut(s) 583, 595
SsiI CCGC 4 cut(s) 9, 55, 246, 614
SspMI CTAG 1 cut(s) 648
StuI AGGCCT 2 cut(s) 583, 595
StyD4I CCNGG 1 cut(s) 234
TaiI ACGT 1 cut(s) 36
TaqI TCGA 5 cut(s) 126, 147, 252, 500, 729
TasI AATT 4 cut(s) 200, 217, 241, 290
TfiI GAWTC 2 cut(s) 254, 317
TseI GCWGC 1 cut(s) 691
TspDTI ATGAA 3 cut(s) 367, 395, 669
TspGWI ACGGA 2 cut(s) 480, 709
Tth111I GACNNNGTC 1 cut(s) 20
VneI GTGCAC 1 cut(s) 350
VpaK11BI GGWCC 1 cut(s) 121
XmiI GTMKAC 1 cut(s) 15
XspI CTAG 1 cut(s) 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.