Rmu_sc0002863.1_g000012

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002863.1
OG0017842
Physical Location & Seq
Forward (+)
36668 .. 38460
1793 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 945 bp
atggccaaatgtaggggtgggcgtccggacccgaaagaccgaggaaccgacccgaaccgaggaaaaaagcccaattcggttcgcggcgagccccgagaccggtttcccagcttcaagctctcaactttacccaggtacaccatttccctcatcgctgtaatttcagacattatcttatcagagacgccagatccgcatggcagcgacggcttcggcgccgccgtggagcccggaagacgacctcatcctcaagaacgccatcgagtgttcaaatttgctttttcgcttgtgaacttgaaacgattgcacggaggtgcttctctggaagcgcttgccagaggagcggtcagattctcctgcaaattcacggtgggagatttgcgggagcggtggcacgcgttgctctacgacgccgacgtgtcgcttgaactttccccaaatttttcgtcacagtcgctgttacagctcgctaatctctacgcgatttcgccgtcgccgacttggcgcaagtccgagccactccgagatccgataggcctttgcttcgtcttcaaaaatccgatcaactcttccgatcagctcaagatcgtgtacatgcctagtccaagcggcaacttcagtccacgttttgtattccggactcttgagtttgtttgtaccaaaacttgcaaaacaggcaaaataggcagaactggcattttgggcccgaaaaagcccgaaaaccgaaccggcccgaatgggttcggtttctgttggttttcagtttacaaaaagtccgaaccggcccgaaccgacagtttcgggttcggtctcggtctcactgattttcgggcccgaacagacccgagcccagccctagcgaaatggcacttgagaatcatatgtgcagatctggtgccattgatcttatctgtgtcgactctgtctcggctctcactccactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

314

Amino Acids

34.88

Weight (kDa)

10.02

Isoelectric Point (pI)

41.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MCRS_N PF13325 107 - 141 7.1e-08 N-terminal region of micro-spherule protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 215, 895
AccBSI CCGCTC 2 cut(s) 344, 388
AccI GTMKAC 1 cut(s) 917
AccII CGCG 3 cut(s) 84, 398, 482
AccIII TCCGGA 2 cut(s) 25, 636
AciI CCGC 7 cut(s) 84, 194, 219, 344, 382, 388, 609
AclWI GGATC 2 cut(s) 185, 521
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 272, 362, 439
AcuI CTGAAG 1 cut(s) 601
AcyI GRCGYC 4 cut(s) 22, 185, 216, 411
AfaI GTAC 3 cut(s) 137, 593, 658
AfeI AGCGCT 1 cut(s) 330
AfiI CCNNNNNNNGG 3 cut(s) 12, 59, 99
AflIII ACRYGT 2 cut(s) 396, 417
AgeI ACCGGT 1 cut(s) 99
AgsI TTSAA 5 cut(s) 115, 271, 298, 428, 553
AjiI CACGTC 1 cut(s) 418
AjnI CCWGG 1 cut(s) 131
AleI CACNNNNGTG 1 cut(s) 312
AluBI AGCT 4 cut(s) 111, 118, 466, 580
AluI AGCT 4 cut(s) 111, 118, 466, 580
Alw26I GTCTC 5 cut(s) 90, 176, 815, 821, 930
AlwI GGATC 2 cut(s) 185, 521
AlwNI CAGNNNCTG 1 cut(s) 457
Ama87I CYCGRG 2 cut(s) 93, 844
Aor13HI TCCGGA 2 cut(s) 25, 636
Aor51HI AGCGCT 1 cut(s) 330
AoxI GGCC 6 cut(s) 3, 535, 703, 730, 783, 831
ApaI GGGCCC 2 cut(s) 707, 835
ApeKI GCWGC 1 cut(s) 201
ApoI RAATTY 3 cut(s) 272, 362, 439
ArsI GACNNNNNNTTYG 2 cut(s) 431, 463
AsiGI ACCGGT 1 cut(s) 99
Asp700I GAANNNNTTC 1 cut(s) 740
AspLEI GCGC 3 cut(s) 218, 331, 507
AspS9I GGNCC 7 cut(s) 28, 703, 704, 731, 784, 831, 832
AsuC2I CCSGG 1 cut(s) 231
AvaI CYCGRG 2 cut(s) 93, 844
AvaII GGWCC 1 cut(s) 28
BaeGI GKGCMC 2 cut(s) 707, 835
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 2 cut(s) 215, 895
BanII GRGCYC 5 cut(s) 93, 231, 707, 835, 851
BbsI GAAGAC 2 cut(s) 241, 541
BbvI GCAGC 1 cut(s) 213
BccI CCATC 1 cut(s) 267
BceAI ACGGC 3 cut(s) 206, 223, 475
BciT130I CCWGG 1 cut(s) 133
BcnI CCSGG 1 cut(s) 231
BcoDI GTCTC 5 cut(s) 90, 176, 815, 821, 930
BfaI CTAG 3 cut(s) 600, 857, 943
BfoI RGCGCY 2 cut(s) 219, 332
BglI GCCNNNNNGGC 1 cut(s) 502
BglII AGATCT 1 cut(s) 889
BisI GCNGC 4 cut(s) 85, 202, 219, 610
BlsI GCNGC 4 cut(s) 86, 203, 220, 611
Bme1390I CCNGG 2 cut(s) 133, 231
Bme18I GGWCC 1 cut(s) 28
BmeT110I CYCGRG 2 cut(s) 93, 844
BmgBI CACGTC 1 cut(s) 418
BmgT120I GGNCC 7 cut(s) 28, 703, 704, 731, 784, 831, 832
BmiI GGNNCC 7 cut(s) 30, 46, 217, 228, 705, 833, 897
BmrFI CCNGG 2 cut(s) 133, 231
BpiI GAAGAC 2 cut(s) 241, 541
BpuEI CTTGAG 4 cut(s) 234, 566, 665, 892
BpuMI CCSGG 1 cut(s) 231
BsaHI GRCGYC 4 cut(s) 22, 185, 216, 411
BsaI GGTCTC 3 cut(s) 90, 815, 821
BsaJI CCNNGG 4 cut(s) 40, 58, 131, 222
BsaWI WCCGGW 3 cut(s) 25, 99, 636
Bsc4I CCNNNNNNNGG 3 cut(s) 12, 59, 99
Bse118I RCCGGY 3 cut(s) 99, 728, 781
Bse1I ACTGG 1 cut(s) 697
BseAI TCCGGA 2 cut(s) 25, 636
BseBI CCWGG 1 cut(s) 133
BseDI CCNNGG 4 cut(s) 40, 58, 131, 222
BseGI GGATG 1 cut(s) 244
BseLI CCNNNNNNNGG 3 cut(s) 12, 59, 99
BseNI ACTGG 1 cut(s) 697
BseRI GAGGAG 1 cut(s) 354
BseSI GKGCMC 2 cut(s) 707, 835
BseXI GCAGC 1 cut(s) 213
BseYI CCCAGC 2 cut(s) 107, 850
BsgI GTGCAG 1 cut(s) 906
Bsh1236I CGCG 3 cut(s) 84, 398, 482
BshFI GGCC 6 cut(s) 5, 537, 705, 732, 785, 833
BshNI GGYRCC 2 cut(s) 215, 895
BshTI ACCGGT 1 cut(s) 99
BsiHKCI CYCGRG 2 cut(s) 93, 844
BsiSI CCGG 6 cut(s) 26, 100, 231, 637, 729, 782
BslI CCNNNNNNNGG 3 cut(s) 12, 59, 99
BsmAI GTCTC 5 cut(s) 90, 176, 815, 821, 930
BsmBI CGTCTC 1 cut(s) 176
BsnI GGCC 6 cut(s) 5, 537, 705, 732, 785, 833
Bso31I GGTCTC 3 cut(s) 90, 815, 821
BsoBI CYCGRG 2 cut(s) 93, 844
Bsp120I GGGCCC 2 cut(s) 703, 831
Bsp1286I GDGCHC 5 cut(s) 93, 231, 707, 835, 851
Bsp13I TCCGGA 2 cut(s) 25, 636
Bsp1407I TGTACA 1 cut(s) 591
Bsp143I GATC 7 cut(s) 190, 526, 561, 574, 585, 889, 903
BspACI CCGC 7 cut(s) 84, 194, 219, 344, 382, 388, 609
BspANI GGCC 6 cut(s) 5, 537, 705, 732, 785, 833
BspEI TCCGGA 2 cut(s) 25, 636
BspFNI CGCG 3 cut(s) 84, 398, 482
BspLI GGNNCC 7 cut(s) 30, 46, 217, 228, 705, 833, 897
BspPI GGATC 2 cut(s) 185, 521
BspT107I GGYRCC 2 cut(s) 215, 895
BspTNI GGTCTC 3 cut(s) 90, 815, 821
BsrBI CCGCTC 2 cut(s) 344, 388
BsrFI RCCGGY 3 cut(s) 99, 728, 781
BsrGI TGTACA 1 cut(s) 591
BsrI ACTGG 1 cut(s) 697
BssAI RCCGGY 3 cut(s) 99, 728, 781
BssECI CCNNGG 4 cut(s) 40, 58, 131, 222
BssMI GATC 7 cut(s) 190, 526, 561, 574, 585, 889, 903
BssNI GRCGYC 4 cut(s) 22, 185, 216, 411
Bst2UI CCWGG 1 cut(s) 133
Bst4CI ACNGT 3 cut(s) 370, 453, 797
Bst6I CTCTTC 1 cut(s) 574
BstACI GRCGYC 4 cut(s) 22, 185, 216, 411
BstAPI GCANNNNNTGC 1 cut(s) 400
BstAUI TGTACA 1 cut(s) 591
BstC8I GCNNGC 4 cut(s) 89, 333, 396, 468
BstDSI CCRYGG 1 cut(s) 222
BstF5I GGATG 1 cut(s) 244
BstFNI CGCG 3 cut(s) 84, 398, 482
BstH2I RGCGCY 2 cut(s) 219, 332
BstHHI GCGC 3 cut(s) 218, 331, 507
BstKTI GATC 7 cut(s) 193, 529, 564, 577, 588, 892, 906
BstMAI GTCTC 5 cut(s) 90, 176, 815, 821, 930
BstMBI GATC 7 cut(s) 190, 526, 561, 574, 585, 889, 903
BstNI CCWGG 1 cut(s) 133
BstNSI RCATGY 1 cut(s) 598
BstSCI CCNGG 2 cut(s) 131, 229
BstSLI GKGCMC 2 cut(s) 707, 835
BstUI CGCG 3 cut(s) 84, 398, 482
BstV1I GCAGC 1 cut(s) 213
BstV2I GAAGAC 2 cut(s) 241, 541
BstX2I RGATCY 3 cut(s) 190, 526, 889
BstYI RGATCY 3 cut(s) 190, 526, 889
BsuRI GGCC 6 cut(s) 5, 537, 705, 732, 785, 833
BtgI CCRYGG 1 cut(s) 222
BtgZI GCGATG 1 cut(s) 136
BtrI CACGTC 1 cut(s) 418
BtsCI GGATG 1 cut(s) 244
BtsIMutI CAGTG 1 cut(s) 819
Cac8I GCNNGC 4 cut(s) 89, 333, 396, 468
CaiI CAGNNNCTG 1 cut(s) 457
CfoI GCGC 3 cut(s) 218, 331, 507
Cfr10I RCCGGY 3 cut(s) 99, 728, 781
Cfr13I GGNCC 7 cut(s) 28, 703, 704, 731, 784, 831, 832
CseI GACGC 3 cut(s) 11, 193, 419
Csp6I GTAC 3 cut(s) 136, 592, 657
CspAI ACCGGT 1 cut(s) 99
CviAII CATG 2 cut(s) 197, 595
CviQI GTAC 3 cut(s) 136, 592, 657
DinI GGCGCC 1 cut(s) 217
DpnI GATC 7 cut(s) 192, 528, 563, 576, 587, 891, 905
DpnII GATC 7 cut(s) 190, 526, 561, 574, 585, 889, 903
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 574
EarI CTCTTC 1 cut(s) 574
Eco147I AGGCCT 1 cut(s) 537
Eco24I GRGCYC 5 cut(s) 93, 231, 707, 835, 851
Eco31I GGTCTC 3 cut(s) 90, 815, 821
Eco47I GGWCC 1 cut(s) 28
Eco47III AGCGCT 1 cut(s) 330
Eco57I CTGAAG 1 cut(s) 601
Eco88I CYCGRG 2 cut(s) 93, 844
EcoRII CCWGG 1 cut(s) 131
EcoT38I GRGCYC 5 cut(s) 93, 231, 707, 835, 851
EgeI GGCGCC 1 cut(s) 217
EheI GGCGCC 1 cut(s) 217
Esp3I CGTCTC 1 cut(s) 176
FaeI CATG 2 cut(s) 200, 598
FaiI YATR 4 cut(s) 198, 596, 881, 883
FatI CATG 2 cut(s) 196, 594
FauI CCCGC 1 cut(s) 375
FauNDI CATATG 1 cut(s) 881
FblI GTMKAC 1 cut(s) 917
Fnu4HI GCNGC 4 cut(s) 85, 202, 219, 610
FokI GGATG 1 cut(s) 231
FriOI GRGCYC 5 cut(s) 93, 231, 707, 835, 851
Fsp4HI GCNGC 4 cut(s) 85, 202, 219, 610
FspBI CTAG 3 cut(s) 600, 857, 943
GlaI GCGC 3 cut(s) 217, 330, 506
GluI GCNGC 4 cut(s) 85, 202, 219, 610
GsaI CCCAGC 2 cut(s) 111, 854
HaeII RGCGCY 2 cut(s) 219, 332
HaeIII GGCC 6 cut(s) 5, 537, 705, 732, 785, 833
HapII CCGG 6 cut(s) 26, 100, 231, 637, 729, 782
HgaI GACGC 3 cut(s) 11, 193, 419
HhaI GCGC 3 cut(s) 218, 331, 507
Hin1I GRCGYC 4 cut(s) 22, 185, 216, 411
Hin1II CATG 2 cut(s) 200, 598
Hin6I GCGC 3 cut(s) 216, 329, 505
HinP1I GCGC 3 cut(s) 216, 329, 505
HincII GTYRAC 1 cut(s) 918
HindII GTYRAC 1 cut(s) 918
HinfI GANTC 4 cut(s) 351, 640, 876, 919
HpaII CCGG 6 cut(s) 26, 100, 231, 637, 729, 782
Hpy166II GTNNAC 6 cut(s) 138, 292, 592, 623, 766, 918
Hpy188I TCNGA 9 cut(s) 166, 181, 350, 514, 524, 531, 561, 574, 778
Hpy188III TCNNGA 6 cut(s) 26, 251, 323, 583, 637, 644
Hpy8I GTNNAC 6 cut(s) 138, 292, 592, 623, 766, 918
Hpy99I CGWCG 4 cut(s) 209, 413, 419, 496
HpyCH4III ACNGT 3 cut(s) 370, 453, 797
HpyCH4IV ACGT 2 cut(s) 417, 625
HpyCH4V TGCA 4 cut(s) 307, 360, 669, 887
HpySE526I ACGT 2 cut(s) 417, 625
Hsp92I GRCGYC 4 cut(s) 22, 185, 216, 411
Hsp92II CATG 2 cut(s) 200, 598
HspAI GCGC 3 cut(s) 216, 329, 505
KasI GGCGCC 1 cut(s) 215
Kpn2I TCCGGA 2 cut(s) 25, 636
Kzo9I GATC 7 cut(s) 190, 526, 561, 574, 585, 889, 903
LmnI GCTCC 3 cut(s) 226, 341, 385
Lsp1109I GCAGC 1 cut(s) 213
MaeI CTAG 3 cut(s) 600, 857, 943
MaeII ACGT 2 cut(s) 417, 625
MaeIII GTNAC 2 cut(s) 447, 459
MalI GATC 7 cut(s) 192, 528, 563, 576, 587, 891, 905
MbiI CCGCTC 2 cut(s) 344, 388
MboI GATC 7 cut(s) 190, 526, 561, 574, 585, 889, 903
MboII GAAGA 3 cut(s) 246, 541, 561
MflI RGATCY 3 cut(s) 190, 526, 889
MhlI GDGCHC 5 cut(s) 93, 231, 707, 835, 851
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 5 cut(s) 73, 159, 272, 362, 439
MluI ACGCGT 1 cut(s) 396
MluNI TGGCCA 1 cut(s) 5
Mly113I GGCGCC 1 cut(s) 216
MlyI GAGTC 2 cut(s) 634, 913
MnlI CCTC 7 cut(s) 35, 53, 158, 252, 258, 305, 332
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 2 cut(s) 25, 636
MroXI GAANNNNTTC 1 cut(s) 740
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 1 cut(s) 312
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 6 cut(s) 26, 100, 231, 637, 729, 782
MspR9I CCNGG 2 cut(s) 133, 231
MvaI CCWGG 1 cut(s) 133
MvnI CGCG 3 cut(s) 84, 398, 482
NarI GGCGCC 1 cut(s) 216
NciI CCSGG 1 cut(s) 231
NdeI CATATG 1 cut(s) 881
NdeII GATC 7 cut(s) 190, 526, 561, 574, 585, 889, 903
NlaIII CATG 2 cut(s) 200, 598
NlaIV GGNNCC 7 cut(s) 30, 46, 217, 228, 705, 833, 897
NmeAIII GCCGAG 1 cut(s) 907
NmuCI GTSAC 1 cut(s) 447
NspI RCATGY 1 cut(s) 598
OliI CACNNNNGTG 1 cut(s) 312
PceI AGGCCT 1 cut(s) 537
PcsI WCGNNNNNNNCGW 3 cut(s) 219, 414, 494
PdmI GAANNNNTTC 1 cut(s) 740
PfeI GAWTC 2 cut(s) 351, 876
PflFI GACNNNGTC 1 cut(s) 922
PinAI ACCGGT 1 cut(s) 99
PkrI GCNGC 4 cut(s) 86, 203, 220, 611
PleI GAGTC 2 cut(s) 634, 913
PluTI GGCGCC 1 cut(s) 219
PpsI GAGTC 2 cut(s) 634, 913
Psp6I CCWGG 1 cut(s) 131
PspFI CCCAGC 2 cut(s) 107, 850
PspGI CCWGG 1 cut(s) 131
PspN4I GGNNCC 7 cut(s) 30, 46, 217, 228, 705, 833, 897
PspOMI GGGCCC 2 cut(s) 703, 831
PspPI GGNCC 7 cut(s) 28, 703, 704, 731, 784, 831, 832
PstNI CAGNNNCTG 1 cut(s) 457
PsuI RGATCY 3 cut(s) 190, 526, 889
PsyI GACNNNGTC 1 cut(s) 922
RsaI GTAC 3 cut(s) 137, 593, 658
RsaNI GTAC 3 cut(s) 136, 592, 657
RseI CAYNNNNRTG 1 cut(s) 312
SalI GTCGAC 1 cut(s) 916
SatI GCNGC 4 cut(s) 85, 202, 219, 610
Sau3AI GATC 7 cut(s) 190, 526, 561, 574, 585, 889, 903
Sau96I GGNCC 7 cut(s) 28, 703, 704, 731, 784, 831, 832
SchI GAGTC 2 cut(s) 634, 913
ScrFI CCNGG 2 cut(s) 133, 231
SduI GDGCHC 5 cut(s) 93, 231, 707, 835, 851
SetI ASST 9 cut(s) 113, 120, 137, 244, 316, 420, 468, 582, 628
SfoI GGCGCC 1 cut(s) 217
SinI GGWCC 1 cut(s) 28
SmiMI CAYNNNNRTG 1 cut(s) 312
SmlI CTYRAG 4 cut(s) 249, 581, 644, 871
SmoI CTYRAG 4 cut(s) 249, 581, 644, 871
Sse9I AATT 5 cut(s) 73, 159, 272, 362, 439
SseBI AGGCCT 1 cut(s) 537
SsiI CCGC 7 cut(s) 84, 194, 219, 344, 382, 388, 609
SspDI GGCGCC 1 cut(s) 215
SspMI CTAG 3 cut(s) 600, 857, 943
StuI AGGCCT 1 cut(s) 537
StyD4I CCNGG 2 cut(s) 131, 229
TaaI ACNGT 3 cut(s) 370, 453, 797
TaiI ACGT 2 cut(s) 420, 628
TaqI TCGA 2 cut(s) 262, 917
TaqII GACCGA 3 cut(s) 54, 797, 803
TasI AATT 5 cut(s) 73, 159, 272, 362, 439
TatI WGTACW 1 cut(s) 591
TauI GCSGC 3 cut(s) 87, 221, 612
TfiI GAWTC 2 cut(s) 351, 876
TscAI CASTG 1 cut(s) 826
TseFI GTSAC 1 cut(s) 447
TseI GCWGC 1 cut(s) 201
Tsp45I GTSAC 1 cut(s) 447
TspGWI ACGGA 1 cut(s) 324
TspRI CASTG 1 cut(s) 826
Tth111I GACNNNGTC 1 cut(s) 922
VpaK11BI GGWCC 1 cut(s) 28
XapI RAATTY 3 cut(s) 272, 362, 439
XceI RCATGY 1 cut(s) 598
XmiI GTMKAC 1 cut(s) 917
XmnI GAANNNNTTC 1 cut(s) 740
XspI CTAG 3 cut(s) 600, 857, 943
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.