Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002883.1

Orthogroup ID

OG0003050

Physical Location & Seq

Genomic Coordinates Forward (+)

26991 .. 30759

Gene Structure 3769 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002883.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

atgcagctggcttttcacacgctcaatgcatcaaggtctgcctatcaatcgattacatttaagcctgacttctttgatgtctacaatgttgctgttgaccttgtgcaatgtagtgtgcttttgaaggctgtttgtgctgttcttaggacgcctataggaagcatagatcatttgagcgtgaatttgcctgatcccgatgcatcaaaagtgcaatggactttagaatgctacagtggtatgaggaaatcctattggattatttgcaatgttgaacccgacatacaacttttggcacttgataggacaaaattccctagcagcctagtagtacgacctcgagatctcaacagattgcttgctaattttcaatcatctcttcaagagatcactattttcgcaacagagcctacttccttaccttctgatgcagcaagtgaaattggaggaaaagctgttgaacttagaagttacattgacccaaccaaagataatgactcattactgcatactcaattatggatagaccctacagaagagtttgtgcagtatacccacatgggagaccctgtagatgtgacatttgccatgaaggagttgaaggcatttctttcattctgtgaaggctgtgaagtcgaaattcacttgtactttgagaagtctggagagcctattctgatggcaccgagatttggtcttgatgatacgtccacttcaaattttgatgctacactggtgcttgcaaccatgctagcgtcacagcaaggagctgctgaagtgcacattcaggatgagaatgggatggggtcagaagcacagcatcaaagattccgaacaaatgtccctgagcattcatctgatcagacaagaatgtggtctgatcttacaggaagtggtgcaaaaaatggtagtggtgcggaagtaggacaggttcaaggggaaagagatttgaatgccagtgaacagagagatattcagaggtttaacacaatgcatatatcaaaggctgcatctgctaggggaaatgagcctgttggtcttaatatcttcgaccctgttgaaaagaatcatatggaagagcctcaagataggtcaacaatcgttggtaatggcttttcacaacgtcatccgagcaactgggtaggtgcagatgaagatgataacgatgaggatggcgaggaggatgaaatgtgcattcagtcaacgccaccatactacgaagaacactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000076 GO:0000077 GO:0000228 GO:0000278 GO:0000793 GO:0000794 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0007093 GO:0007346 GO:0008150 GO:0008152 GO:0008408 GO:0009314 GO:0009628 GO:0009966 GO:0009967 GO:0009987 GO:0010212 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0016787 GO:0016788 GO:0017124 GO:0019899 GO:0019900 GO:0019901 GO:0019904 GO:0022402 GO:0023051 GO:0023056 GO:0030896 GO:0031570 GO:0031573 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0042826 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044773 GO:0044774 GO:0045786 GO:0045930 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0051726 GO:0065007 GO:0070013 GO:0071214 GO:0071478 GO:0071479 GO:0071704 GO:0080134 GO:0080135 GO:0090304 GO:0090305 GO:0104004 GO:1901360 GO:1902229 GO:1902231 GO:1902531 GO:1902533 GO:1903047 GO:2001020 GO:2001022 GO:2001233 GO:2001235 GO:2001242 GO:2001244

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

Rad9

Protein Analysis

408

Amino Acids

45.49

Weight (kDa)

4.57

Isoelectric Point (pI)

37.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003050)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05480 AT3G05480 AT3G05480
fragaria_vesca	FvH4_6g06510 FvH4_6g06510 FvH4_6g06510 FvH4_6g06510 FvH4_6g06510 FvH4_6g06510
malus_domestica	MD04G1201200.v1.1
prunus_persica	Prupe.6G321300_v2.0.a1 Prupe.6G321300_v2.0.a1 Prupe.6G321300_v2.0.a1 Prupe.6G321300_v2.0.a1 Prupe.6G321300_v2.0.a1 Prupe.6G321300_v2.0.a1 Prupe.6G321300_v2.0.a1 Prupe.6G321300_v2.0.a1 Prupe.6G321300_v2.0.a1 Prupe.6G321300_v2.0.a1 Prupe.6G321300_v2.0.a1 Prupe.6G321300_v2.0.a1 Prupe.6G321300_v2.0.a1 Prupe.6G321300_v2.0.a1 Prupe.6G321300_v2.0.a1
pyrus_communis	pycom04g17720
rosa_chinensis	RchiOBHm_Chr3g0455661
rosa_laevigata	RLG00000025342
rosa_multiflora	Rmu_sc0002883.1_g000008
rosa_roxburghii	Rroxscaffold_6G00423620 Rroxscaffold_6G00424120
rosa_rugosa	Rorug03G0009000 Rorug03G0009000
rosa_samantha	Rh3AG068600 Rh3BG071100 Rh3CG069400 Rh3DG071000
rosa_wichuraiana	Rw3G005500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	679
AccI	GTMKAC	2 cut(s)	81, 548
AciI	CCGC	1 cut(s)	914
AclWI	GGATC	1 cut(s)	185
AcsI	RAATTY	4 cut(s)	181, 308, 636, 715
AcuI	CTGAAG	1 cut(s)	792
AcyI	GRCGYC	1 cut(s)	149
AfaI	GTAC	2 cut(s)	330, 647
AfiI	CCNNNNNNNGG	1 cut(s)	689
AluBI	AGCT	3 cut(s)	7, 452, 767
AluI	AGCT	3 cut(s)	7, 452, 767
Alw21I	GWGCWC	1 cut(s)	780
Alw26I	GTCTC	1 cut(s)	555
Alw44I	GTGCAC	1 cut(s)	776
AlwI	GGATC	1 cut(s)	185
Ama87I	CYCGRG	1 cut(s)	336
ApaLI	GTGCAC	1 cut(s)	776
ApeKI	GCWGC	5 cut(s)	4, 318, 428, 767, 1004
ApoI	RAATTY	4 cut(s)	181, 308, 636, 715
AsuNHI	GCTAGC	1 cut(s)	748
AvaI	CYCGRG	1 cut(s)	336
BaeGI	GKGCMC	1 cut(s)	780
BanI	GGYRCC	1 cut(s)	679
Bbv12I	GWGCWC	1 cut(s)	780
BbvI	GCAGC	5 cut(s)	16, 330, 440, 754, 991
BccI	CCATC	3 cut(s)	670, 793, 1163
BclI	TGATCA	1 cut(s)	856
BcoDI	GTCTC	1 cut(s)	555
BfaI	CTAG	5 cut(s)	315, 323, 749, 1014, 1225
BfmI	CTRYAG	4 cut(s)	153, 229, 528, 567
BglII	AGATCT	1 cut(s)	340
BisI	GCNGC	5 cut(s)	5, 319, 429, 768, 1005
BlsI	GCNGC	5 cut(s)	6, 320, 430, 769, 1006
BmeT110I	CYCGRG	1 cut(s)	336
BmiI	GGNNCC	1 cut(s)	681
BmrI	ACTGGG	1 cut(s)	1144
BmsI	GCATC	7 cut(s)	38, 187, 209, 415, 712, 826, 1016
BmtI	GCTAGC	1 cut(s)	752
BmuI	ACTGGG	1 cut(s)	1144
BpmI	CTGGAG	1 cut(s)	681
Bpu10I	CCTNAGC	1 cut(s)	843
BpuEI	CTTGAG	1 cut(s)	1065
Bsa29I	ATCGAT	1 cut(s)	50
BsaHI	GRCGYC	1 cut(s)	149
BsaI	GGTCTC	1 cut(s)	555
BsaXI	ACNNNNNCTCC	2 cut(s)	552, 582
Bsc4I	CCNNNNNNNGG	1 cut(s)	689
Bse1I	ACTGG	3 cut(s)	735, 954, 1139
Bse3DI	GCAATG	3 cut(s)	113, 218, 271
BseCI	ATCGAT	1 cut(s)	50
BseGI	GGATG	5 cut(s)	793, 804, 1123, 1174, 1186
BseLI	CCNNNNNNNGG	1 cut(s)	689
BseMI	GCAATG	3 cut(s)	113, 218, 271
BseMII	CTCAG	1 cut(s)	834
BseNI	ACTGG	3 cut(s)	735, 954, 1139
BseRI	GAGGAG	1 cut(s)	1190
BseSI	GKGCMC	1 cut(s)	780
BseXI	GCAGC	5 cut(s)	16, 330, 440, 754, 991
BsgI	GTGCAG	2 cut(s)	563, 1164
BshNI	GGYRCC	1 cut(s)	679
BshVI	ATCGAT	1 cut(s)	50
BsiHKAI	GWGCWC	1 cut(s)	780
BsiHKCI	CYCGRG	1 cut(s)	336
BslFI	GGGAC	1 cut(s)	824
BslI	CCNNNNNNNGG	1 cut(s)	689
BsmAI	GTCTC	1 cut(s)	555
BsmFI	GGGAC	1 cut(s)	824
BsmI	GAATGC	4 cut(s)	230, 847, 955, 1191
Bso31I	GGTCTC	1 cut(s)	555
BsoBI	CYCGRG	1 cut(s)	336
Bsp1286I	GDGCHC	1 cut(s)	780
Bsp143I	GATC	6 cut(s)	166, 190, 340, 384, 856, 877
BspACI	CCGC	1 cut(s)	914
BspCNI	CTCAG	1 cut(s)	835
BspDI	ATCGAT	1 cut(s)	50
BspLI	GGNNCC	1 cut(s)	681
BspOI	GCTAGC	1 cut(s)	752
BspPI	GGATC	1 cut(s)	185
BspQI	GCTCTTC	1 cut(s)	1068
BspT107I	GGYRCC	1 cut(s)	679
BspTNI	GGTCTC	1 cut(s)	555
BsrDI	GCAATG	3 cut(s)	113, 218, 271
BsrI	ACTGG	3 cut(s)	735, 954, 1139
BssMI	GATC	6 cut(s)	166, 190, 340, 384, 856, 877
BssNAI	GTATAC	1 cut(s)	549
BssNI	GRCGYC	1 cut(s)	149
Bst1107I	GTATAC	1 cut(s)	549
Bst4CI	ACNGT	1 cut(s)	233
Bst6I	CTCTTC	3 cut(s)	381, 528, 1068
BstACI	GRCGYC	1 cut(s)	149
BstC8I	GCNNGC	4 cut(s)	9, 357, 738, 750
BstDEI	CTNAG	3 cut(s)	143, 461, 843
BstF5I	GGATG	5 cut(s)	793, 804, 1123, 1174, 1186
BstKTI	GATC	6 cut(s)	169, 193, 343, 387, 859, 880
BstMAI	GTCTC	1 cut(s)	555
BstMBI	GATC	6 cut(s)	166, 190, 340, 384, 856, 877
BstMWI	GCNNNNNNNGC	2 cut(s)	134, 1010
BstSFI	CTRYAG	4 cut(s)	153, 229, 528, 567
BstSLI	GKGCMC	1 cut(s)	780
BstV1I	GCAGC	5 cut(s)	16, 330, 440, 754, 991
BstX2I	RGATCY	1 cut(s)	340
BstYI	RGATCY	1 cut(s)	340
BstZ17I	GTATAC	1 cut(s)	549
Bsu15I	ATCGAT	1 cut(s)	50
BsuTUI	ATCGAT	1 cut(s)	50
BtsCI	GGATG	5 cut(s)	793, 804, 1123, 1174, 1186
BtsIMutI	CAGTG	3 cut(s)	238, 728, 961
Cac8I	GCNNGC	4 cut(s)	9, 357, 738, 750
ClaI	ATCGAT	1 cut(s)	50
CseI	GACGC	2 cut(s)	157, 741
Csp6I	GTAC	2 cut(s)	329, 646
CviAII	CATG	3 cut(s)	556, 586, 745
CviQI	GTAC	2 cut(s)	329, 646
DdeI	CTNAG	3 cut(s)	143, 461, 843
DpnI	GATC	6 cut(s)	168, 192, 342, 386, 858, 879
DpnII	GATC	6 cut(s)	166, 190, 340, 384, 856, 877
Eam1104I	CTCTTC	3 cut(s)	381, 528, 1068
EarI	CTCTTC	3 cut(s)	381, 528, 1068
Eco31I	GGTCTC	1 cut(s)	555
Eco57I	CTGAAG	1 cut(s)	792
Eco88I	CYCGRG	1 cut(s)	336
EcoT22I	ATGCAT	3 cut(s)	31, 202, 993
FaeI	CATG	3 cut(s)	559, 589, 748
FalI	AAGNNNNNCTT	2 cut(s)	53, 85
FaqI	GGGAC	1 cut(s)	824
FatI	CATG	3 cut(s)	555, 585, 744
FauNDI	CATATG	1 cut(s)	1068
FbaI	TGATCA	1 cut(s)	856
FblI	GTMKAC	2 cut(s)	81, 548
Fnu4HI	GCNGC	5 cut(s)	5, 319, 429, 768, 1005
FokI	GGATG	5 cut(s)	800, 811, 1110, 1181, 1193
Fsp4HI	GCNGC	5 cut(s)	5, 319, 429, 768, 1005
FspBI	CTAG	5 cut(s)	315, 323, 749, 1014, 1225
GluI	GCNGC	5 cut(s)	5, 319, 429, 768, 1005
GsuI	CTGGAG	1 cut(s)	681
HgaI	GACGC	2 cut(s)	157, 741
Hin1I	GRCGYC	1 cut(s)	149
Hin1II	CATG	3 cut(s)	559, 589, 748
HincII	GTYRAC	3 cut(s)	97, 1092, 1200
HindII	GTYRAC	3 cut(s)	97, 1092, 1200
HinfI	GANTC	3 cut(s)	494, 825, 1063
Hpy166II	GTNNAC	8 cut(s)	82, 97, 549, 708, 778, 959, 1092, 1200
Hpy188I	TCNGA	9 cut(s)	424, 675, 808, 830, 856, 861, 877, 975, 1128
Hpy188III	TCNNGA	7 cut(s)	194, 338, 380, 660, 695, 785, 1082
Hpy8I	GTNNAC	8 cut(s)	82, 97, 549, 708, 778, 959, 1092, 1200
HpyAV	CCTTC	5 cut(s)	118, 429, 583, 592, 614
HpyCH4III	ACNGT	1 cut(s)	233
HpyCH4IV	ACGT	2 cut(s)	704, 1120
HpyF10VI	GCNNNNNNNGC	2 cut(s)	134, 1010
HpyF3I	CTNAG	3 cut(s)	143, 461, 843
HpySE526I	ACGT	2 cut(s)	704, 1120
Hsp92I	GRCGYC	1 cut(s)	149
Hsp92II	CATG	3 cut(s)	559, 589, 748
Ksp22I	TGATCA	1 cut(s)	856
Kzo9I	GATC	6 cut(s)	166, 190, 340, 384, 856, 877
LguI	GCTCTTC	1 cut(s)	1068
LmnI	GCTCC	1 cut(s)	764
Lsp1109I	GCAGC	5 cut(s)	16, 330, 440, 754, 991
LweI	GCATC	7 cut(s)	38, 187, 209, 415, 712, 826, 1016
MaeI	CTAG	5 cut(s)	315, 323, 749, 1014, 1225
MaeII	ACGT	2 cut(s)	704, 1120
MaeIII	GTNAC	3 cut(s)	467, 574, 753
MalI	GATC	6 cut(s)	168, 192, 342, 386, 858, 879
MboI	GATC	6 cut(s)	166, 190, 340, 384, 856, 877
MboII	GAAGA	5 cut(s)	368, 545, 1036, 1085, 1163
MflI	RGATCY	1 cut(s)	340
MhlI	GDGCHC	1 cut(s)	780
MluCI	AATT	7 cut(s)	181, 308, 361, 438, 512, 636, 715
MlyI	GAGTC	1 cut(s)	488
MnlI	CCTC	8 cut(s)	234, 345, 437, 969, 1089, 1159, 1168, 1171
Mph1103I	ATGCAT	3 cut(s)	31, 202, 993
MseI	TTAA	3 cut(s)	60, 981, 1038
MspA1I	CMGCKG	1 cut(s)	7
Mva1269I	GAATGC	4 cut(s)	230, 847, 955, 1191
MwoI	GCNNNNNNNGC	2 cut(s)	134, 1010
NdeI	CATATG	1 cut(s)	1068
NdeII	GATC	6 cut(s)	166, 190, 340, 384, 856, 877
NheI	GCTAGC	1 cut(s)	748
NlaIII	CATG	3 cut(s)	559, 589, 748
NlaIV	GGNNCC	1 cut(s)	681
NmuCI	GTSAC	2 cut(s)	574, 753
NsiI	ATGCAT	3 cut(s)	31, 202, 993
PaeR7I	CTCGAG	1 cut(s)	336
PciSI	GCTCTTC	1 cut(s)	1068
PctI	GAATGC	4 cut(s)	230, 847, 955, 1191
PfeI	GAWTC	2 cut(s)	825, 1063
PkrI	GCNGC	5 cut(s)	6, 320, 430, 769, 1006
PleI	GAGTC	1 cut(s)	488
PpsI	GAGTC	1 cut(s)	488
PspN4I	GGNNCC	1 cut(s)	681
PsrI	GAACNNNNNNTAC	4 cut(s)	264, 296, 912, 944
PsuI	RGATCY	1 cut(s)	340
PvuII	CAGCTG	1 cut(s)	7
RsaI	GTAC	2 cut(s)	330, 647
RsaNI	GTAC	2 cut(s)	329, 646
SapI	GCTCTTC	1 cut(s)	1068
SaqAI	TTAA	3 cut(s)	60, 981, 1038
SatI	GCNGC	5 cut(s)	5, 319, 429, 768, 1005
Sau3AI	GATC	6 cut(s)	166, 190, 340, 384, 856, 877
SchI	GAGTC	1 cut(s)	488
SduI	GDGCHC	1 cut(s)	780
SfaNI	GCATC	7 cut(s)	38, 187, 209, 415, 712, 826, 1016
SfcI	CTRYAG	4 cut(s)	153, 229, 528, 567
Sfr274I	CTCGAG	1 cut(s)	336
SlaI	CTCGAG	1 cut(s)	336
SmlI	CTYRAG	2 cut(s)	336, 1080
SmoI	CTYRAG	2 cut(s)	336, 1080
Sse9I	AATT	7 cut(s)	181, 308, 361, 438, 512, 636, 715
SsiI	CCGC	1 cut(s)	914
SspMI	CTAG	5 cut(s)	315, 323, 749, 1014, 1225
TaaI	ACNGT	1 cut(s)	233
TaiI	ACGT	2 cut(s)	707, 1123
TaqI	TCGA	4 cut(s)	50, 337, 633, 1047
TasI	AATT	7 cut(s)	181, 308, 361, 438, 512, 636, 715
TatI	WGTACW	1 cut(s)	645
TfiI	GAWTC	2 cut(s)	825, 1063
Tru1I	TTAA	3 cut(s)	60, 981, 1038
Tru9I	TTAA	3 cut(s)	60, 981, 1038
TscAI	CASTG	3 cut(s)	238, 735, 961
TseFI	GTSAC	2 cut(s)	574, 753
TseI	GCWGC	5 cut(s)	4, 318, 428, 767, 1004
Tsp45I	GTSAC	2 cut(s)	574, 753
TspDTI	ATGAA	5 cut(s)	600, 602, 840, 1164, 1197
TspRI	CASTG	3 cut(s)	238, 735, 961
VneI	GTGCAC	1 cut(s)	776
XapI	RAATTY	4 cut(s)	181, 308, 636, 715
XhoI	CTCGAG	1 cut(s)	336
XmiI	GTMKAC	2 cut(s)	81, 548
XspI	CTAG	5 cut(s)	315, 323, 749, 1014, 1225
Zsp2I	ATGCAT	3 cut(s)	31, 202, 993

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.