Rorug03G0009000

Cell cycle checkpoint control protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0003050
Physical Location & Seq
Reverse (-)
667203 .. 673851
6649 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0009000.1

Sequence Viewer

Length: 1140 bp
ATGAAGATTGTTCACAAGGATTACGTTCCAGGCGGACCCGGCAAAGTTAAGATGGTGCCGGCTGATTCCGATGATCTGTGGTATGTGTACAATTTGATAGCTCCTGGAGATAGTGTTATTGCTGTCACTGTGAGGAAAGTTCTAAGAGAAGGGGCTAGCGGTGGAAGAGATGCAGAGCGTGTGAAGCTCAAGTTAGAAATAAAAGTTGAGGAGGTTGCCGATTATGATAAAGTAGGCAATGTCTTGCGTATACGTGGAAAGAATATTCTTGAGAATGAACATGTAAAGATAGGAGCATATCATACTCTGGAACTTGAGCCTCACCGACCTTTTGTTTTAAAAAAGGATGTGTGGGACTCACTGGCCTTGCACGAACTCAAGCAAGCCTGTGATCCTACGGCGAGTGCTGACCTAGCTGTGGTAATAATGCAAGAAGGATTAGCACATATTCTCCTTGTTGGAAGAAGTATGACAATAACTCGGTCACGAATAGAAACTTCAATCCCTCGCAAGCATGGACCTTCAGTTGCAGGTTATGAGAAAGCTTTGAGCAAGTTCTTTGAAAATGTGTTACAGGCTTTCTTGAAGAATGTTGATTTCAGTGTTGTTCGCTGTGCTGTGATTGCAAGTCCAGGTTTCACAAAGGATCAGTTTCATCGTCACTTATTGTTGGAAGCAGAGAGAAAACAGCTGAGGCCTATCATTGAGAACAAGTCACGGATTCTTCTTGTGCATACAACCTCGGGTTACAAGCATAGTTTGAGGGAGGTTCTGGATGCTCCAAATGTTATGAATATGATAAAAGATACTAAAGCAGCACAAGAGGTCCGGGCTCTCCAAGATTTCTTCAGTATGCTTTCAAATGAACCACATCGTGCATGCTATGGGCCAAAGCATGTTGAGGTTGCTCATGAACAAATGGCCGTGCAAACCCTTTTGATAACAGATGAGCTGTTCAGGAATGCTGATGTAGTAACGAGGCAAAAATATGTCAATTTGGTGAACTCAGTGAAGAATTCAGGCGGCAATGTTCATATATTTTCTTCTATGCACGTTTCAGGAGAACAACTGGCACAAATAACTGGCATTGCTGCAATTCTTCGTTTCCCTCTACCAGACCTGGATGATATAGAGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000076 GO:0000077 GO:0000228 GO:0000278 GO:0000793 GO:0000794 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0007093 GO:0007346 GO:0008150 GO:0008152 GO:0008408 GO:0009314 GO:0009628 GO:0009966 GO:0009967 GO:0009987 GO:0010212 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0016787 GO:0016788 GO:0017124 GO:0019899 GO:0019900 GO:0019901 GO:0019904 GO:0022402 GO:0023051 GO:0023056 GO:0030896 GO:0031570 GO:0031573 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0042826 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044773 GO:0044774 GO:0045786 GO:0045930 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0051726 GO:0065007 GO:0070013 GO:0071214 GO:0071478 GO:0071479 GO:0071704 GO:0080134 GO:0080135 GO:0090304 GO:0090305 GO:0104004 GO:1901360 GO:1902229 GO:1902231 GO:1902531 GO:1902533 GO:1903047 GO:2001020 GO:2001022 GO:2001233 GO:2001235 GO:2001242 GO:2001244
KEGG Pathways
Metabolic & Signaling
ko04218 map04218
Pfam Domains
Protein Families
Rad9

Protein Analysis

379

Amino Acids

42.43

Weight (kDa)

8.27

Isoelectric Point (pI)

39.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pelota_N PF26356 1 - 130 6.1e-42 Pelota N-terminal domain
eRF1_2 PF03464 138 - 269 2e-29 eRF1 domain 2
eRF1_3 PF03465 273 - 371 2.7e-29 eRF1 domain 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 521
AccB1I GGYRCC 1 cut(s) 55
AccI GTMKAC 1 cut(s) 250
AciI CCGC 3 cut(s) 33, 159, 1023
AclWI GGATC 2 cut(s) 386, 654
AcoI YGGCCR 1 cut(s) 921
AcsI RAATTY 1 cut(s) 1015
AcuI CTGAAG 2 cut(s) 507, 832
AdeI CACNNNGTG 1 cut(s) 875
AfaI GTAC 1 cut(s) 89
AfiI CCNNNNNNNGG 1 cut(s) 418
AflIII ACRYGT 1 cut(s) 280
AgsI TTSAA 4 cut(s) 501, 563, 586, 861
AjnI CCWGG 4 cut(s) 28, 103, 631, 1119
AluBI AGCT 6 cut(s) 101, 187, 416, 545, 691, 952
AluI AGCT 6 cut(s) 101, 187, 416, 545, 691, 952
AlwI GGATC 2 cut(s) 386, 654
Ama87I CYCGRG 1 cut(s) 742
AoxI GGCC 4 cut(s) 363, 695, 887, 921
ApeKI GCWGC 2 cut(s) 815, 1091
ApoI RAATTY 1 cut(s) 1015
AspS9I GGNCC 4 cut(s) 35, 518, 826, 887
AsuC2I CCSGG 2 cut(s) 39, 830
AsuHPI GGTGA 2 cut(s) 314, 1012
AsuNHI GCTAGC 1 cut(s) 155
AvaI CYCGRG 1 cut(s) 742
AvaII GGWCC 3 cut(s) 35, 518, 826
BanI GGYRCC 1 cut(s) 55
BanII GRGCYC 1 cut(s) 835
BbvCI CCTCAGC 1 cut(s) 692
BbvI GCAGC 2 cut(s) 827, 1078
BccI CCATC 1 cut(s) 46
BceAI ACGGC 2 cut(s) 414, 908
BciT130I CCWGG 4 cut(s) 30, 105, 633, 1121
BcnI CCSGG 2 cut(s) 39, 830
BfaI CTAG 2 cut(s) 156, 413
BfuAI ACCTGC 1 cut(s) 521
BisI GCNGC 3 cut(s) 816, 1024, 1092
BlsI GCNGC 3 cut(s) 817, 1025, 1093
Bme1390I CCNGG 6 cut(s) 30, 39, 105, 633, 830, 1121
Bme18I GGWCC 3 cut(s) 35, 518, 826
BmeT110I CYCGRG 1 cut(s) 742
BmgT120I GGNCC 4 cut(s) 35, 518, 826, 887
BmiI GGNNCC 2 cut(s) 37, 57
BmrFI CCNGG 6 cut(s) 30, 39, 105, 633, 830, 1121
BmsI GCATC 2 cut(s) 160, 766
BmtI GCTAGC 1 cut(s) 159
BpmI CTGGAG 1 cut(s) 126
Bpu10I CCTNAGC 1 cut(s) 692
BpuEI CTTGAG 4 cut(s) 173, 290, 335, 362
BpuMI CCSGG 2 cut(s) 39, 830
BsaAI YACGTR 1 cut(s) 254
BsaJI CCNNGG 1 cut(s) 741
BsaXI ACNNNNNCTCC 4 cut(s) 99, 129, 435, 465
Bsc4I CCNNNNNNNGG 1 cut(s) 418
Bse118I RCCGGY 1 cut(s) 58
Bse1I ACTGG 3 cut(s) 366, 1074, 1087
Bse3DI GCAATG 3 cut(s) 244, 1033, 1086
BseBI CCWGG 4 cut(s) 30, 105, 633, 1121
BseDI CCNNGG 1 cut(s) 741
BseGI GGATG 3 cut(s) 352, 781, 1129
BseLI CCNNNNNNNGG 1 cut(s) 418
BseMI GCAATG 3 cut(s) 244, 1033, 1086
BseMII CTCAG 2 cut(s) 683, 1020
BseNI ACTGG 3 cut(s) 366, 1074, 1087
BseRI GAGGAG 1 cut(s) 224
BseXI GCAGC 2 cut(s) 827, 1078
BshFI GGCC 4 cut(s) 365, 697, 889, 923
BshNI GGYRCC 1 cut(s) 55
BsiHKCI CYCGRG 1 cut(s) 742
BsiSI CCGG 3 cut(s) 39, 59, 829
BslFI GGGAC 1 cut(s) 368
BslI CCNNNNNNNGG 1 cut(s) 418
BsmFI GGGAC 1 cut(s) 368
BsmI GAATGC 1 cut(s) 967
BsnI GGCC 4 cut(s) 365, 697, 889, 923
BsoBI CYCGRG 1 cut(s) 742
Bsp1286I GDGCHC 1 cut(s) 835
Bsp1407I TGTACA 1 cut(s) 87
Bsp143I GATC 3 cut(s) 73, 391, 646
BspACI CCGC 3 cut(s) 33, 159, 1023
BspANI GGCC 4 cut(s) 365, 697, 889, 923
BspCNI CTCAG 2 cut(s) 684, 1019
BspHI TCATGA 1 cut(s) 910
BspLI GGNNCC 2 cut(s) 37, 57
BspMI ACCTGC 1 cut(s) 521
BspOI GCTAGC 1 cut(s) 159
BspPI GGATC 2 cut(s) 386, 654
BspT107I GGYRCC 1 cut(s) 55
BsrDI GCAATG 3 cut(s) 244, 1033, 1086
BsrFI RCCGGY 1 cut(s) 58
BsrGI TGTACA 1 cut(s) 87
BsrI ACTGG 3 cut(s) 366, 1074, 1087
BssAI RCCGGY 1 cut(s) 58
BssECI CCNNGG 1 cut(s) 741
BssMI GATC 3 cut(s) 73, 391, 646
BssNAI GTATAC 1 cut(s) 251
Bst1107I GTATAC 1 cut(s) 251
Bst2UI CCWGG 4 cut(s) 30, 105, 633, 1121
Bst4CI ACNGT 1 cut(s) 130
Bst6I CTCTTC 1 cut(s) 160
BstAUI TGTACA 1 cut(s) 87
BstBAI YACGTR 1 cut(s) 254
BstC8I GCNNGC 5 cut(s) 60, 157, 384, 512, 880
BstDEI CTNAG 3 cut(s) 143, 692, 1006
BstF5I GGATG 3 cut(s) 352, 781, 1129
BstKTI GATC 3 cut(s) 76, 394, 649
BstMBI GATC 3 cut(s) 73, 391, 646
BstMWI GCNNNNNNNGC 4 cut(s) 39, 184, 413, 623
BstNI CCWGG 4 cut(s) 30, 105, 633, 1121
BstNSI RCATGY 3 cut(s) 284, 882, 899
BstSCI CCNGG 6 cut(s) 28, 37, 103, 631, 828, 1119
BstV1I GCAGC 2 cut(s) 827, 1078
BstZ17I GTATAC 1 cut(s) 251
BsuRI GGCC 4 cut(s) 365, 697, 889, 923
BtsCI GGATG 3 cut(s) 352, 781, 1129
BtsIMutI CAGTG 4 cut(s) 126, 359, 607, 1014
BveI ACCTGC 1 cut(s) 521
Cac8I GCNNGC 5 cut(s) 60, 157, 384, 512, 880
CciI TCATGA 1 cut(s) 910
Cfr10I RCCGGY 1 cut(s) 58
Cfr13I GGNCC 4 cut(s) 35, 518, 826, 887
Csp6I GTAC 1 cut(s) 88
CviAII CATG 5 cut(s) 281, 515, 879, 896, 911
CviQI GTAC 1 cut(s) 88
DdeI CTNAG 3 cut(s) 143, 692, 1006
DpnI GATC 3 cut(s) 75, 393, 648
DpnII GATC 3 cut(s) 73, 391, 646
DraI TTTAAA 1 cut(s) 339
DraIII CACNNNGTG 1 cut(s) 875
EaeI YGGCCR 1 cut(s) 921
Eam1104I CTCTTC 1 cut(s) 160
EarI CTCTTC 1 cut(s) 160
EciI GGCGGA 1 cut(s) 48
Eco147I AGGCCT 1 cut(s) 697
Eco24I GRGCYC 1 cut(s) 835
Eco47I GGWCC 3 cut(s) 35, 518, 826
Eco57I CTGAAG 2 cut(s) 507, 832
Eco88I CYCGRG 1 cut(s) 742
EcoRI GAATTC 1 cut(s) 1015
EcoRII CCWGG 4 cut(s) 28, 103, 631, 1119
EcoT38I GRGCYC 1 cut(s) 835
FaeI CATG 5 cut(s) 284, 518, 882, 899, 914
FaqI GGGAC 1 cut(s) 368
FatI CATG 5 cut(s) 280, 514, 878, 895, 910
FblI GTMKAC 1 cut(s) 250
Fnu4HI GCNGC 3 cut(s) 816, 1024, 1092
FokI GGATG 3 cut(s) 359, 788, 1136
FriOI GRGCYC 1 cut(s) 835
Fsp4HI GCNGC 3 cut(s) 816, 1024, 1092
FspBI CTAG 2 cut(s) 156, 413
GluI GCNGC 3 cut(s) 816, 1024, 1092
GsuI CTGGAG 1 cut(s) 126
HaeIII GGCC 4 cut(s) 365, 697, 889, 923
HapII CCGG 3 cut(s) 39, 59, 829
Hin1II CATG 5 cut(s) 284, 518, 882, 899, 914
HindIII AAGCTT 1 cut(s) 543
HinfI GANTC 3 cut(s) 65, 356, 721
HpaII CCGG 3 cut(s) 39, 59, 829
HphI GGTGA 2 cut(s) 314, 1012
Hpy166II GTNNAC 4 cut(s) 13, 88, 251, 1003
Hpy188I TCNGA 1 cut(s) 70
Hpy188III TCNNGA 8 cut(s) 269, 308, 486, 583, 773, 911, 958, 1059
Hpy8I GTNNAC 4 cut(s) 13, 88, 251, 1003
HpyAV CCTTC 3 cut(s) 143, 428, 531
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4IV ACGT 3 cut(s) 24, 253, 1053
HpyF10VI GCNNNNNNNGC 4 cut(s) 39, 184, 413, 623
HpyF3I CTNAG 3 cut(s) 143, 692, 1006
HpySE526I ACGT 3 cut(s) 24, 253, 1053
Hsp92II CATG 5 cut(s) 284, 518, 882, 899, 914
KroI GCCGGC 1 cut(s) 58
KroNI GCCGGC 1 cut(s) 60
Kzo9I GATC 3 cut(s) 73, 391, 646
LmnI GCTCC 3 cut(s) 106, 293, 784
Lsp1109I GCAGC 2 cut(s) 827, 1078
LweI GCATC 2 cut(s) 160, 766
MaeI CTAG 2 cut(s) 156, 413
MaeII ACGT 3 cut(s) 24, 253, 1053
MaeIII GTNAC 7 cut(s) 124, 483, 570, 659, 714, 746, 973
MalI GATC 3 cut(s) 75, 393, 648
MboI GATC 3 cut(s) 73, 391, 646
MboII GAAGA 9 cut(s) 16, 177, 474, 598, 716, 838, 1024, 1035, 1091
MhlI GDGCHC 1 cut(s) 835
MluCI AATT 4 cut(s) 91, 994, 1015, 1095
MlyI GAGTC 1 cut(s) 350
MmeI TCCRAC 2 cut(s) 439, 651
MroNI GCCGGC 1 cut(s) 58
MseI TTAA 2 cut(s) 48, 338
MspA1I CMGCKG 1 cut(s) 691
MspI CCGG 3 cut(s) 39, 59, 829
MspR9I CCNGG 6 cut(s) 30, 39, 105, 633, 830, 1121
Mva1269I GAATGC 1 cut(s) 967
MvaI CCWGG 4 cut(s) 30, 105, 633, 1121
MwoI GCNNNNNNNGC 4 cut(s) 39, 184, 413, 623
NaeI GCCGGC 1 cut(s) 60
NciI CCSGG 2 cut(s) 39, 830
NdeII GATC 3 cut(s) 73, 391, 646
NgoMIV GCCGGC 1 cut(s) 58
NheI GCTAGC 1 cut(s) 155
NlaIII CATG 5 cut(s) 284, 518, 882, 899, 914
NlaIV GGNNCC 2 cut(s) 37, 57
NmuCI GTSAC 4 cut(s) 124, 483, 659, 714
NspI RCATGY 3 cut(s) 284, 882, 899
PaeI GCATGC 1 cut(s) 882
PagI TCATGA 1 cut(s) 910
PceI AGGCCT 1 cut(s) 697
PciI ACATGT 1 cut(s) 280
PctI GAATGC 1 cut(s) 967
PdiI GCCGGC 1 cut(s) 60
PfeI GAWTC 2 cut(s) 65, 721
PfoI TCCNGGA 1 cut(s) 103
PkrI GCNGC 3 cut(s) 817, 1025, 1093
PleI GAGTC 1 cut(s) 350
PpsI GAGTC 1 cut(s) 350
Ppu21I YACGTR 1 cut(s) 254
PscI ACATGT 1 cut(s) 280
Psp6I CCWGG 4 cut(s) 28, 103, 631, 1119
PspGI CCWGG 4 cut(s) 28, 103, 631, 1119
PspN4I GGNNCC 2 cut(s) 37, 57
PspPI GGNCC 4 cut(s) 35, 518, 826, 887
PvuII CAGCTG 1 cut(s) 691
RsaI GTAC 1 cut(s) 89
RsaNI GTAC 1 cut(s) 88
SaqAI TTAA 2 cut(s) 48, 338
SatI GCNGC 3 cut(s) 816, 1024, 1092
Sau3AI GATC 3 cut(s) 73, 391, 646
Sau96I GGNCC 4 cut(s) 35, 518, 826, 887
SchI GAGTC 1 cut(s) 350
ScrFI CCNGG 6 cut(s) 30, 39, 105, 633, 830, 1121
SduI GDGCHC 1 cut(s) 835
SfaNI GCATC 2 cut(s) 160, 766
SinI GGWCC 3 cut(s) 35, 518, 826
SmlI CTYRAG 4 cut(s) 188, 269, 314, 377
SmoI CTYRAG 4 cut(s) 188, 269, 314, 377
SphI GCATGC 1 cut(s) 882
Sse9I AATT 4 cut(s) 91, 994, 1015, 1095
SseBI AGGCCT 1 cut(s) 697
SsiI CCGC 3 cut(s) 33, 159, 1023
SspI AATATT 1 cut(s) 265
SspMI CTAG 2 cut(s) 156, 413
StuI AGGCCT 1 cut(s) 697
StyD4I CCNGG 6 cut(s) 28, 37, 103, 631, 828, 1119
TaaI ACNGT 1 cut(s) 130
TaiI ACGT 3 cut(s) 27, 256, 1056
TaqII GACCGA 1 cut(s) 471
TasI AATT 4 cut(s) 91, 994, 1015, 1095
TatI WGTACW 1 cut(s) 87
TauI GCSGC 1 cut(s) 1026
TfiI GAWTC 2 cut(s) 65, 721
Tru1I TTAA 2 cut(s) 48, 338
Tru9I TTAA 2 cut(s) 48, 338
TscAI CASTG 4 cut(s) 133, 366, 607, 1014
TseFI GTSAC 4 cut(s) 124, 483, 659, 714
TseI GCWGC 2 cut(s) 815, 1091
Tsp45I GTSAC 4 cut(s) 124, 483, 659, 714
TspDTI ATGAA 7 cut(s) 17, 291, 644, 806, 879, 927, 1022
TspGWI ACGGA 1 cut(s) 733
TspRI CASTG 4 cut(s) 133, 366, 607, 1014
VpaK11BI GGWCC 3 cut(s) 35, 518, 826
XapI RAATTY 1 cut(s) 1015
XceI RCATGY 3 cut(s) 284, 882, 899
XmiI GTMKAC 1 cut(s) 250
XspI CTAG 2 cut(s) 156, 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.