Rw3G005500

Cell cycle checkpoint control protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0003050
Physical Location & Seq
Forward (+)
4555029 .. 4559199
4171 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G005500.1

Sequence Viewer

Length: 1326 bp
ATGGAGATCAGTATGAGCGGCAACGCCCTGAAGACCTTCGCTCGCTCCATCACGTGCCTCGCACGTGTCGGAAACGAGCTCGCCATCCAAGCTTCCTCTTCTCAGCTGGCTTTTCACACTCTCAATGCATCAAGGTCTGCCTATCAATCGATTACATTTAAGCCTGACTTCTTTGATGTCTACAATGTTGCTGTTGACCTTGTGCAATGTAGTGTGCTTTTGAAGGCTGTTTGTGCTGTTCTTAGGACGCCTATAGGAAGCATAGATCATTTGAGCGTGAATTTGCCTGATCCCGATGCATCAAAAGTGCAATGGACTTTAGAATGCTACAGTGGTATGAGGAAATCCTATTGGATTATTTGCAATGTTGAACCCGACATACAACTTTTGGCACTTGATAGGACAAAATTCCCTAGCAGCCTAGTAGTACGACCTCGAGATCTCAACAGATTGCTTGCTAATTTTCAATCATCTCTTCAAGAGATCACTATTTTCGCAACAGAGCCTACTTCCTTACCTTCTGATGCAGCAAGTGAAATTGGAGGAAAAGCTGTTGAACTTAGAAGTTACATTGACCCAACCAAAGATAATGACTCATTACTGCATACTCAATTATGGATAGACCCTACAGAAGAGTTTGTGCAGTATACCCACACGGGAGACCCTGTAGATGTGACATTTGCCATGAAGGAGTTGAAGGCATTTCTTTCGTTCTGTGAAGGCTGTGAAGTCGAAATTCACTTGTACTTTGAGAAGTCTGGAGAGCCTATTCTGATGGCACCGAGATTTGGTCTTGATGATACGTCCACTTCAAATTTTGATGCTACACTGGTGCTTGCAACCATGCTAGCGTCACAGCAAGGAGCTGCTGAAGTGCACATTCAGGATGAGAATGGGATGGGGTCAGAAGCACAGCATCAAAGATTCCGAACAAATGTCCCTGAGCATTCATCTGATCAGACAAGAATGTGGTCTGATCTTACAGGAAGTGGTGCAAAAAATGGTAGTGGTGCGGAAGTAGGACAGGTTCAAGGGGAAAGAGATTTGAATGCCAGTGCACAGAGAGATATTCAGAGGTTTAACACAATGCATATATCAAAGGCTGCATCTGCTAGGGGAAATGAGCCTGTTGGTCTTAATATCTTCGACCCTGTTGAAAAGAATCATATGGAAGAGCCTCAAGATAGGTCAACAATCGTTGGTAATGGCTTTTCACAACGTCATCCGAGCAACTGGGTAGGTGCAGATGAAGATGATAACGATGAGGATGGCGAGGAGGATGAAATGTGCATTCAGTCAACGCCACCATACTACGAAGAACACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000076 GO:0000077 GO:0000228 GO:0000278 GO:0000793 GO:0000794 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0007093 GO:0007346 GO:0008150 GO:0008152 GO:0008408 GO:0009314 GO:0009628 GO:0009966 GO:0009967 GO:0009987 GO:0010212 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0016787 GO:0016788 GO:0017124 GO:0019899 GO:0019900 GO:0019901 GO:0019904 GO:0022402 GO:0023051 GO:0023056 GO:0030896 GO:0031570 GO:0031573 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0042826 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044773 GO:0044774 GO:0045786 GO:0045930 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0051726 GO:0065007 GO:0070013 GO:0071214 GO:0071478 GO:0071479 GO:0071704 GO:0080134 GO:0080135 GO:0090304 GO:0090305 GO:0104004 GO:1901360 GO:1902229 GO:1902231 GO:1902531 GO:1902533 GO:1903047 GO:2001020 GO:2001022 GO:2001233 GO:2001235 GO:2001242 GO:2001244
KEGG Pathways
Metabolic & Signaling
ko04218 map04218
Pfam Domains
Protein Families
Rad9

Protein Analysis

441

Amino Acids

48.81

Weight (kDa)

4.64

Isoelectric Point (pI)

38.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad9 PF04139 13 - 282 2.5e-74 Rad9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 778
AccBSI CCGCTC 1 cut(s) 18
AccI GTMKAC 2 cut(s) 180, 647
AciI CCGC 2 cut(s) 18, 1013
AclWI GGATC 1 cut(s) 284
AcsI RAATTY 4 cut(s) 280, 407, 735, 814
AcuI CTGAAG 2 cut(s) 50, 891
AcvI CACGTG 2 cut(s) 54, 65
AcyI GRCGYC 1 cut(s) 248
AfaI GTAC 2 cut(s) 429, 746
AfiI CCNNNNNNNGG 1 cut(s) 788
AflIII ACRYGT 1 cut(s) 64
AluBI AGCT 5 cut(s) 79, 92, 106, 551, 866
AluI AGCT 5 cut(s) 79, 92, 106, 551, 866
Alw21I GWGCWC 3 cut(s) 81, 879, 1060
Alw26I GTCTC 1 cut(s) 654
Alw44I GTGCAC 2 cut(s) 875, 1056
AlwI GGATC 1 cut(s) 284
Ama87I CYCGRG 1 cut(s) 435
ApaLI GTGCAC 2 cut(s) 875, 1056
ApeKI GCWGC 4 cut(s) 417, 527, 866, 1103
ApoI RAATTY 4 cut(s) 280, 407, 735, 814
Asp700I GAANNNNTTC 1 cut(s) 35
AsuNHI GCTAGC 1 cut(s) 847
AvaI CYCGRG 1 cut(s) 435
BaeGI GKGCMC 2 cut(s) 879, 1060
BanI GGYRCC 1 cut(s) 778
BanII GRGCYC 1 cut(s) 81
BbrPI CACGTG 2 cut(s) 54, 65
BbsI GAAGAC 1 cut(s) 38
Bbv12I GWGCWC 3 cut(s) 81, 879, 1060
BbvI GCAGC 4 cut(s) 429, 539, 853, 1090
BccI CCATC 5 cut(s) 56, 92, 769, 892, 1262
BcgI CGANNNNNNTGC 2 cut(s) 690, 724
BclI TGATCA 1 cut(s) 955
BcoDI GTCTC 1 cut(s) 654
BfaI CTAG 5 cut(s) 414, 422, 848, 1113, 1324
BfmI CTRYAG 4 cut(s) 252, 328, 627, 666
BglII AGATCT 1 cut(s) 439
BisI GCNGC 5 cut(s) 19, 418, 528, 867, 1104
BlsI GCNGC 5 cut(s) 20, 419, 529, 868, 1105
BmeT110I CYCGRG 1 cut(s) 435
BmiI GGNNCC 1 cut(s) 780
BmrI ACTGGG 1 cut(s) 1243
BmsI GCATC 7 cut(s) 137, 286, 308, 514, 811, 925, 1115
BmtI GCTAGC 1 cut(s) 851
BmuI ACTGGG 1 cut(s) 1243
BpiI GAAGAC 1 cut(s) 38
BpmI CTGGAG 1 cut(s) 780
Bpu10I CCTNAGC 1 cut(s) 942
BpuEI CTTGAG 1 cut(s) 1164
Bsa29I ATCGAT 1 cut(s) 149
BsaAI YACGTR 2 cut(s) 54, 65
BsaHI GRCGYC 1 cut(s) 248
BsaI GGTCTC 1 cut(s) 654
BsaXI ACNNNNNCTCC 2 cut(s) 651, 681
Bsc4I CCNNNNNNNGG 1 cut(s) 788
Bse1I ACTGG 3 cut(s) 834, 1053, 1238
Bse3DI GCAATG 3 cut(s) 212, 317, 370
BseCI ATCGAT 1 cut(s) 149
BseGI GGATG 6 cut(s) 84, 892, 903, 1222, 1273, 1285
BseLI CCNNNNNNNGG 1 cut(s) 788
BseMI GCAATG 3 cut(s) 212, 317, 370
BseMII CTCAG 2 cut(s) 116, 933
BseNI ACTGG 3 cut(s) 834, 1053, 1238
BseRI GAGGAG 1 cut(s) 1289
BseSI GKGCMC 2 cut(s) 879, 1060
BseXI GCAGC 4 cut(s) 429, 539, 853, 1090
BsgI GTGCAG 2 cut(s) 662, 1263
BshNI GGYRCC 1 cut(s) 778
BshVI ATCGAT 1 cut(s) 149
BsiHKAI GWGCWC 3 cut(s) 81, 879, 1060
BsiHKCI CYCGRG 1 cut(s) 435
BslFI GGGAC 1 cut(s) 923
BslI CCNNNNNNNGG 1 cut(s) 788
BsmAI GTCTC 1 cut(s) 654
BsmFI GGGAC 1 cut(s) 923
BsmI GAATGC 4 cut(s) 329, 946, 1054, 1290
Bso31I GGTCTC 1 cut(s) 654
BsoBI CYCGRG 1 cut(s) 435
Bsp1286I GDGCHC 3 cut(s) 81, 879, 1060
Bsp143I GATC 7 cut(s) 6, 265, 289, 439, 483, 955, 976
BspACI CCGC 2 cut(s) 18, 1013
BspCNI CTCAG 2 cut(s) 115, 934
BspDI ATCGAT 1 cut(s) 149
BspLI GGNNCC 1 cut(s) 780
BspOI GCTAGC 1 cut(s) 851
BspPI GGATC 1 cut(s) 284
BspQI GCTCTTC 1 cut(s) 1167
BspT107I GGYRCC 1 cut(s) 778
BspTNI GGTCTC 1 cut(s) 654
BsrBI CCGCTC 1 cut(s) 18
BsrDI GCAATG 3 cut(s) 212, 317, 370
BsrI ACTGG 3 cut(s) 834, 1053, 1238
BssMI GATC 7 cut(s) 6, 265, 289, 439, 483, 955, 976
BssNAI GTATAC 1 cut(s) 648
BssNI GRCGYC 1 cut(s) 248
Bst1107I GTATAC 1 cut(s) 648
Bst4CI ACNGT 1 cut(s) 332
Bst6I CTCTTC 4 cut(s) 103, 480, 627, 1167
BstACI GRCGYC 1 cut(s) 248
BstBAI YACGTR 2 cut(s) 54, 65
BstC8I GCNNGC 6 cut(s) 43, 81, 108, 456, 837, 849
BstDEI CTNAG 4 cut(s) 102, 242, 560, 942
BstF5I GGATG 6 cut(s) 84, 892, 903, 1222, 1273, 1285
BstKTI GATC 7 cut(s) 9, 268, 292, 442, 486, 958, 979
BstMAI GTCTC 1 cut(s) 654
BstMBI GATC 7 cut(s) 6, 265, 289, 439, 483, 955, 976
BstMWI GCNNNNNNNGC 3 cut(s) 89, 233, 1109
BstSFI CTRYAG 4 cut(s) 252, 328, 627, 666
BstSLI GKGCMC 2 cut(s) 879, 1060
BstV1I GCAGC 4 cut(s) 429, 539, 853, 1090
BstV2I GAAGAC 1 cut(s) 38
BstX2I RGATCY 1 cut(s) 439
BstYI RGATCY 1 cut(s) 439
BstZ17I GTATAC 1 cut(s) 648
Bsu15I ATCGAT 1 cut(s) 149
BsuTUI ATCGAT 1 cut(s) 149
BtsCI GGATG 6 cut(s) 84, 892, 903, 1222, 1273, 1285
BtsIMutI CAGTG 3 cut(s) 337, 827, 1060
Cac8I GCNNGC 6 cut(s) 43, 81, 108, 456, 837, 849
ClaI ATCGAT 1 cut(s) 149
CseI GACGC 2 cut(s) 256, 840
Csp6I GTAC 2 cut(s) 428, 745
CviAII CATG 2 cut(s) 685, 844
CviQI GTAC 2 cut(s) 428, 745
DdeI CTNAG 4 cut(s) 102, 242, 560, 942
DpnI GATC 7 cut(s) 8, 267, 291, 441, 485, 957, 978
DpnII GATC 7 cut(s) 6, 265, 289, 439, 483, 955, 976
Eam1104I CTCTTC 4 cut(s) 103, 480, 627, 1167
EarI CTCTTC 4 cut(s) 103, 480, 627, 1167
Ecl136II GAGCTC 1 cut(s) 79
Eco24I GRGCYC 1 cut(s) 81
Eco31I GGTCTC 1 cut(s) 654
Eco53kI GAGCTC 1 cut(s) 79
Eco57I CTGAAG 2 cut(s) 50, 891
Eco72I CACGTG 2 cut(s) 54, 65
Eco88I CYCGRG 1 cut(s) 435
EcoICRI GAGCTC 1 cut(s) 79
EcoT22I ATGCAT 3 cut(s) 130, 301, 1092
EcoT38I GRGCYC 1 cut(s) 81
FaeI CATG 2 cut(s) 688, 847
FalI AAGNNNNNCTT 2 cut(s) 152, 184
FaqI GGGAC 1 cut(s) 923
FatI CATG 2 cut(s) 684, 843
FauNDI CATATG 1 cut(s) 1167
FbaI TGATCA 1 cut(s) 955
FblI GTMKAC 2 cut(s) 180, 647
Fnu4HI GCNGC 5 cut(s) 19, 418, 528, 867, 1104
FokI GGATG 6 cut(s) 71, 899, 910, 1209, 1280, 1292
FriOI GRGCYC 1 cut(s) 81
Fsp4HI GCNGC 5 cut(s) 19, 418, 528, 867, 1104
FspBI CTAG 5 cut(s) 414, 422, 848, 1113, 1324
GluI GCNGC 5 cut(s) 19, 418, 528, 867, 1104
GsuI CTGGAG 1 cut(s) 780
HgaI GACGC 2 cut(s) 256, 840
Hin1I GRCGYC 1 cut(s) 248
Hin1II CATG 2 cut(s) 688, 847
HincII GTYRAC 3 cut(s) 196, 1191, 1299
HindII GTYRAC 3 cut(s) 196, 1191, 1299
HindIII AAGCTT 1 cut(s) 90
HinfI GANTC 3 cut(s) 593, 924, 1162
Hpy166II GTNNAC 8 cut(s) 181, 196, 648, 807, 877, 1058, 1191, 1299
Hpy188III TCNNGA 7 cut(s) 293, 437, 479, 759, 794, 884, 1181
Hpy8I GTNNAC 8 cut(s) 181, 196, 648, 807, 877, 1058, 1191, 1299
HpyAV CCTTC 6 cut(s) 46, 217, 528, 682, 691, 713
HpyCH4III ACNGT 1 cut(s) 332
HpyCH4IV ACGT 4 cut(s) 53, 64, 803, 1219
HpyF10VI GCNNNNNNNGC 3 cut(s) 89, 233, 1109
HpyF3I CTNAG 4 cut(s) 102, 242, 560, 942
HpySE526I ACGT 4 cut(s) 53, 64, 803, 1219
Hsp92I GRCGYC 1 cut(s) 248
Hsp92II CATG 2 cut(s) 688, 847
Ksp22I TGATCA 1 cut(s) 955
Kzo9I GATC 7 cut(s) 6, 265, 289, 439, 483, 955, 976
LguI GCTCTTC 1 cut(s) 1167
LmnI GCTCC 2 cut(s) 50, 863
Lsp1109I GCAGC 4 cut(s) 429, 539, 853, 1090
LweI GCATC 7 cut(s) 137, 286, 308, 514, 811, 925, 1115
MaeI CTAG 5 cut(s) 414, 422, 848, 1113, 1324
MaeII ACGT 4 cut(s) 53, 64, 803, 1219
MaeIII GTNAC 3 cut(s) 566, 673, 852
MalI GATC 7 cut(s) 8, 267, 291, 441, 485, 957, 978
MbiI CCGCTC 1 cut(s) 18
MboI GATC 7 cut(s) 6, 265, 289, 439, 483, 955, 976
MboII GAAGA 7 cut(s) 43, 90, 467, 644, 1135, 1184, 1262
MflI RGATCY 1 cut(s) 439
MhlI GDGCHC 3 cut(s) 81, 879, 1060
MluCI AATT 7 cut(s) 280, 407, 460, 537, 611, 735, 814
MlyI GAGTC 1 cut(s) 587
MmeI TCCRAC 1 cut(s) 49
Mph1103I ATGCAT 3 cut(s) 130, 301, 1092
MroXI GAANNNNTTC 1 cut(s) 35
MseI TTAA 3 cut(s) 159, 1080, 1137
MspA1I CMGCKG 1 cut(s) 106
Mva1269I GAATGC 4 cut(s) 329, 946, 1054, 1290
MwoI GCNNNNNNNGC 3 cut(s) 89, 233, 1109
NdeI CATATG 1 cut(s) 1167
NdeII GATC 7 cut(s) 6, 265, 289, 439, 483, 955, 976
NheI GCTAGC 1 cut(s) 847
NlaIII CATG 2 cut(s) 688, 847
NlaIV GGNNCC 1 cut(s) 780
NmuCI GTSAC 2 cut(s) 673, 852
NsiI ATGCAT 3 cut(s) 130, 301, 1092
PaeR7I CTCGAG 1 cut(s) 435
PciSI GCTCTTC 1 cut(s) 1167
PctI GAATGC 4 cut(s) 329, 946, 1054, 1290
PdmI GAANNNNTTC 1 cut(s) 35
PfeI GAWTC 2 cut(s) 924, 1162
PkrI GCNGC 5 cut(s) 20, 419, 529, 868, 1105
PleI GAGTC 1 cut(s) 587
PmaCI CACGTG 2 cut(s) 54, 65
PmlI CACGTG 2 cut(s) 54, 65
PpsI GAGTC 1 cut(s) 587
Ppu21I YACGTR 2 cut(s) 54, 65
Psp124BI GAGCTC 1 cut(s) 81
PspCI CACGTG 2 cut(s) 54, 65
PspN4I GGNNCC 1 cut(s) 780
PsrI GAACNNNNNNTAC 4 cut(s) 363, 395, 1011, 1043
PsuI RGATCY 1 cut(s) 439
PvuII CAGCTG 1 cut(s) 106
RsaI GTAC 2 cut(s) 429, 746
RsaNI GTAC 2 cut(s) 428, 745
SacI GAGCTC 1 cut(s) 81
SapI GCTCTTC 1 cut(s) 1167
SaqAI TTAA 3 cut(s) 159, 1080, 1137
SatI GCNGC 5 cut(s) 19, 418, 528, 867, 1104
Sau3AI GATC 7 cut(s) 6, 265, 289, 439, 483, 955, 976
SchI GAGTC 1 cut(s) 587
SduI GDGCHC 3 cut(s) 81, 879, 1060
SfaNI GCATC 7 cut(s) 137, 286, 308, 514, 811, 925, 1115
SfcI CTRYAG 4 cut(s) 252, 328, 627, 666
Sfr274I CTCGAG 1 cut(s) 435
SlaI CTCGAG 1 cut(s) 435
SmlI CTYRAG 2 cut(s) 435, 1179
SmoI CTYRAG 2 cut(s) 435, 1179
Sse9I AATT 7 cut(s) 280, 407, 460, 537, 611, 735, 814
SsiI CCGC 2 cut(s) 18, 1013
SspMI CTAG 5 cut(s) 414, 422, 848, 1113, 1324
SstI GAGCTC 1 cut(s) 81
TaaI ACNGT 1 cut(s) 332
TaiI ACGT 4 cut(s) 56, 67, 806, 1222
TaqI TCGA 4 cut(s) 149, 436, 732, 1146
TasI AATT 7 cut(s) 280, 407, 460, 537, 611, 735, 814
TatI WGTACW 1 cut(s) 744
TauI GCSGC 1 cut(s) 21
TfiI GAWTC 2 cut(s) 924, 1162
Tru1I TTAA 3 cut(s) 159, 1080, 1137
Tru9I TTAA 3 cut(s) 159, 1080, 1137
TscAI CASTG 3 cut(s) 337, 834, 1060
TseFI GTSAC 2 cut(s) 673, 852
TseI GCWGC 4 cut(s) 417, 527, 866, 1103
Tsp45I GTSAC 2 cut(s) 673, 852
TspDTI ATGAA 4 cut(s) 701, 939, 1263, 1296
TspRI CASTG 3 cut(s) 337, 834, 1060
VneI GTGCAC 2 cut(s) 875, 1056
XapI RAATTY 4 cut(s) 280, 407, 735, 814
XhoI CTCGAG 1 cut(s) 435
XmiI GTMKAC 2 cut(s) 180, 647
XmnI GAANNNNTTC 1 cut(s) 35
XspI CTAG 5 cut(s) 414, 422, 848, 1113, 1324
Zsp2I ATGCAT 3 cut(s) 130, 301, 1092
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.