Rroxscaffold_6G00423620

Cell cycle checkpoint control protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0003050
Physical Location & Seq
Reverse (-)
44684150 .. 44688884
4735 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00423620.1

Sequence Viewer

Length: 1290 bp
ATGGAGATCAGTATGAGCGGCAACGCCCTGAAGACCTTCGCTCGCTCCATCACGTGCCTCGCACGTGTCGGCAACGAGCTCGCCATCCAAGCTTCCTCTTCTCAGCTGGCTTTTCACACTCTCAATGCGTCAAGGTCTGCCTATCAATCGATTACATTTAAGCCTGACTTCTTTGATGTCTACAATATTGCTGGTGACCTTGTGCAATGTAGTGTGCTTTTGAAGGCTGTTTGTGCTGTTCTCAGGACACCTATAGGAAGCATAGATCATTTGAGCGTGAATTTGCCTGATCCCGATGCATCAAAAGTGCAATGGACTTTAGAATGCTACAGTGGTATGAGGAAATCCTATTGGATTATTTGCAATGTTGAACCCGACATACAACTTTTGGCACTTGATAGGACAAAATTCCCTAGCAGCCTAGTAGTCAGGCCTCGAGATCTCAACAGATTGCTTGCTAATTTTCAATCATCTCTTCAAGAGATCACTATTTTCGCAACAGAGCCTACTTCCTTATCTTCTGATGCAGCAAGTGAAATTGGAGGAAAAGCTGTTGAACTGAGAAGTTACATTGACCCAACCAAAGACCCTACAGAAGAGTTTGTGCAGTATACCCACACGGGAGACCCTGTAGATGTGACATTTGCCATGAAGGAGTTGAAGGCATTTCTTTCGTTCTGTGAAGGCTGTGAAGTCGAAATTCACTTGTACTTTGAGAAGTCTGGAGAGCCTATTCTGATGGCACCGAGATTTGGCCTTGATGATACTTCCACTTCAAATTTTGATGCTACACTGGTGCTTGCAACCATGCTAGCGTCACAGCAAGGAGCTGCTGAAATGCACATTCAGGATGAGAACGGGATGGGCTCAGAAGCACAGCATCAAAGATTCCGAACAAATGTACCTGAGCATTCATCTGGTCAGACAAGAATGTGGTCTGATCTTACAGGAAGTGGTGCAAAAAATGGTAGTGGTGCGGAAGTAGGACAGGTTCAAGGGGAAAGAGATTTGAATGCCAGTGCACAGAGAGATATTCAGAGGTTTAACACAATGCATATATCAAAGGCTGCATCTGCTAGGGGAAATGAGCCTGTTGGTCTTAATATCTTCGACCCTGTTGAAAAGAATCATATGGAAGAGCCTCAAGATAGGTCAACAATCGTTGGTAATGGCTTTTCACAACGTCATCCGAGCAACTGGGTAGATGCAGATGAAGATGATAACGATGAGGATGGCGAGGAGGATGAAATGTGCATTCAGTCAACGCCACCATACTACGAAGAACACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000076 GO:0000077 GO:0000228 GO:0000278 GO:0000793 GO:0000794 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0007093 GO:0007346 GO:0008150 GO:0008152 GO:0008408 GO:0009314 GO:0009628 GO:0009966 GO:0009967 GO:0009987 GO:0010212 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0016787 GO:0016788 GO:0017124 GO:0019899 GO:0019900 GO:0019901 GO:0019904 GO:0022402 GO:0023051 GO:0023056 GO:0030896 GO:0031570 GO:0031573 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0042826 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044773 GO:0044774 GO:0045786 GO:0045930 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0051726 GO:0065007 GO:0070013 GO:0071214 GO:0071478 GO:0071479 GO:0071704 GO:0080134 GO:0080135 GO:0090304 GO:0090305 GO:0104004 GO:1901360 GO:1902229 GO:1902231 GO:1902531 GO:1902533 GO:1903047 GO:2001020 GO:2001022 GO:2001233 GO:2001235 GO:2001242 GO:2001244
KEGG Pathways
Metabolic & Signaling
ko04218 map04218
Pfam Domains
Protein Families
Rad9

Protein Analysis

429

Amino Acids

47.37

Weight (kDa)

4.66

Isoelectric Point (pI)

40.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad9 PF04139 13 - 270 2.6e-64 Rad9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 742
AccBSI CCGCTC 1 cut(s) 18
AccI GTMKAC 2 cut(s) 180, 611
AciI CCGC 2 cut(s) 18, 977
AclWI GGATC 1 cut(s) 284
AcsI RAATTY 4 cut(s) 280, 407, 699, 778
AcuI CTGAAG 1 cut(s) 50
AcvI CACGTG 2 cut(s) 54, 65
AfaI GTAC 2 cut(s) 710, 903
AfiI CCNNNNNNNGG 1 cut(s) 752
AflIII ACRYGT 1 cut(s) 64
AluBI AGCT 5 cut(s) 79, 92, 106, 551, 830
AluI AGCT 5 cut(s) 79, 92, 106, 551, 830
Alw21I GWGCWC 2 cut(s) 81, 1024
Alw26I GTCTC 1 cut(s) 618
Alw44I GTGCAC 1 cut(s) 1020
AlwI GGATC 1 cut(s) 284
Ama87I CYCGRG 1 cut(s) 435
AoxI GGCC 2 cut(s) 431, 754
ApaLI GTGCAC 1 cut(s) 1020
ApeKI GCWGC 4 cut(s) 417, 527, 830, 1067
ApoI RAATTY 4 cut(s) 280, 407, 699, 778
Asp700I GAANNNNTTC 1 cut(s) 35
AsuHPI GGTGA 1 cut(s) 206
AsuNHI GCTAGC 1 cut(s) 811
AvaI CYCGRG 1 cut(s) 435
BaeGI GKGCMC 1 cut(s) 1024
BaeI ACNNNNGTAYC 2 cut(s) 885, 918
BanI GGYRCC 1 cut(s) 742
BanII GRGCYC 2 cut(s) 81, 869
BbrPI CACGTG 2 cut(s) 54, 65
BbsI GAAGAC 1 cut(s) 38
Bbv12I GWGCWC 2 cut(s) 81, 1024
BbvI GCAGC 4 cut(s) 429, 539, 817, 1054
BccI CCATC 5 cut(s) 56, 92, 733, 856, 1226
BcgI CGANNNNNNTGC 4 cut(s) 61, 95, 654, 688
BcoDI GTCTC 1 cut(s) 618
BfaI CTAG 5 cut(s) 414, 422, 812, 1077, 1288
BfmI CTRYAG 4 cut(s) 252, 328, 591, 630
BglII AGATCT 1 cut(s) 439
BisI GCNGC 5 cut(s) 19, 418, 528, 831, 1068
BlsI GCNGC 5 cut(s) 20, 419, 529, 832, 1069
BmeT110I CYCGRG 1 cut(s) 435
BmiI GGNNCC 1 cut(s) 744
BmrI ACTGGG 1 cut(s) 1207
BmsI GCATC 7 cut(s) 286, 308, 514, 775, 889, 1079, 1195
BmtI GCTAGC 1 cut(s) 815
BmuI ACTGGG 1 cut(s) 1207
BpiI GAAGAC 1 cut(s) 38
BpmI CTGGAG 1 cut(s) 744
Bpu10I CCTNAGC 1 cut(s) 906
BpuEI CTTGAG 1 cut(s) 1128
Bsa29I ATCGAT 1 cut(s) 149
BsaAI YACGTR 2 cut(s) 54, 65
BsaI GGTCTC 1 cut(s) 618
BsaXI ACNNNNNCTCC 2 cut(s) 615, 645
Bsc4I CCNNNNNNNGG 1 cut(s) 752
Bse1I ACTGG 3 cut(s) 798, 1017, 1202
Bse3DI GCAATG 3 cut(s) 212, 317, 370
BseCI ATCGAT 1 cut(s) 149
BseGI GGATG 6 cut(s) 84, 856, 867, 1186, 1237, 1249
BseLI CCNNNNNNNGG 1 cut(s) 752
BseMI GCAATG 3 cut(s) 212, 317, 370
BseMII CTCAG 5 cut(s) 116, 256, 551, 882, 897
BseNI ACTGG 3 cut(s) 798, 1017, 1202
BseRI GAGGAG 1 cut(s) 1253
BseSI GKGCMC 1 cut(s) 1024
BseXI GCAGC 4 cut(s) 429, 539, 817, 1054
BsgI GTGCAG 1 cut(s) 626
BshFI GGCC 2 cut(s) 433, 756
BshNI GGYRCC 1 cut(s) 742
BshVI ATCGAT 1 cut(s) 149
BsiHKAI GWGCWC 2 cut(s) 81, 1024
BsiHKCI CYCGRG 1 cut(s) 435
BslI CCNNNNNNNGG 1 cut(s) 752
BsmAI GTCTC 1 cut(s) 618
BsmI GAATGC 4 cut(s) 329, 910, 1018, 1254
BsnI GGCC 2 cut(s) 433, 756
Bso31I GGTCTC 1 cut(s) 618
BsoBI CYCGRG 1 cut(s) 435
Bsp1286I GDGCHC 3 cut(s) 81, 869, 1024
Bsp143I GATC 6 cut(s) 6, 265, 289, 439, 483, 940
BspACI CCGC 2 cut(s) 18, 977
BspANI GGCC 2 cut(s) 433, 756
BspCNI CTCAG 5 cut(s) 115, 255, 552, 881, 898
BspDI ATCGAT 1 cut(s) 149
BspLI GGNNCC 1 cut(s) 744
BspOI GCTAGC 1 cut(s) 815
BspPI GGATC 1 cut(s) 284
BspQI GCTCTTC 1 cut(s) 1131
BspT107I GGYRCC 1 cut(s) 742
BspTNI GGTCTC 1 cut(s) 618
BsrBI CCGCTC 1 cut(s) 18
BsrDI GCAATG 3 cut(s) 212, 317, 370
BsrI ACTGG 3 cut(s) 798, 1017, 1202
BssMI GATC 6 cut(s) 6, 265, 289, 439, 483, 940
BssNAI GTATAC 1 cut(s) 612
Bst1107I GTATAC 1 cut(s) 612
Bst4CI ACNGT 1 cut(s) 332
Bst6I CTCTTC 4 cut(s) 103, 480, 591, 1131
BstBAI YACGTR 2 cut(s) 54, 65
BstC8I GCNNGC 6 cut(s) 43, 81, 108, 456, 801, 813
BstDEI CTNAG 5 cut(s) 102, 242, 560, 868, 906
BstEII GGTNACC 1 cut(s) 194
BstF5I GGATG 6 cut(s) 84, 856, 867, 1186, 1237, 1249
BstKTI GATC 6 cut(s) 9, 268, 292, 442, 486, 943
BstMAI GTCTC 1 cut(s) 618
BstMBI GATC 6 cut(s) 6, 265, 289, 439, 483, 940
BstMWI GCNNNNNNNGC 3 cut(s) 89, 233, 1073
BstPI GGTNACC 1 cut(s) 194
BstSFI CTRYAG 4 cut(s) 252, 328, 591, 630
BstSLI GKGCMC 1 cut(s) 1024
BstV1I GCAGC 4 cut(s) 429, 539, 817, 1054
BstV2I GAAGAC 1 cut(s) 38
BstX2I RGATCY 1 cut(s) 439
BstYI RGATCY 1 cut(s) 439
BstZ17I GTATAC 1 cut(s) 612
Bsu15I ATCGAT 1 cut(s) 149
BsuRI GGCC 2 cut(s) 433, 756
BsuTUI ATCGAT 1 cut(s) 149
BtsCI GGATG 6 cut(s) 84, 856, 867, 1186, 1237, 1249
BtsIMutI CAGTG 3 cut(s) 337, 791, 1024
Cac8I GCNNGC 6 cut(s) 43, 81, 108, 456, 801, 813
ClaI ATCGAT 1 cut(s) 149
CseI GACGC 2 cut(s) 117, 804
Csp6I GTAC 2 cut(s) 709, 902
CviAII CATG 2 cut(s) 649, 808
CviQI GTAC 2 cut(s) 709, 902
DdeI CTNAG 5 cut(s) 102, 242, 560, 868, 906
DpnI GATC 6 cut(s) 8, 267, 291, 441, 485, 942
DpnII GATC 6 cut(s) 6, 265, 289, 439, 483, 940
Eam1104I CTCTTC 4 cut(s) 103, 480, 591, 1131
EarI CTCTTC 4 cut(s) 103, 480, 591, 1131
Ecl136II GAGCTC 1 cut(s) 79
Eco147I AGGCCT 1 cut(s) 433
Eco24I GRGCYC 2 cut(s) 81, 869
Eco31I GGTCTC 1 cut(s) 618
Eco53kI GAGCTC 1 cut(s) 79
Eco57I CTGAAG 1 cut(s) 50
Eco72I CACGTG 2 cut(s) 54, 65
Eco88I CYCGRG 1 cut(s) 435
Eco91I GGTNACC 1 cut(s) 194
EcoICRI GAGCTC 1 cut(s) 79
EcoO65I GGTNACC 1 cut(s) 194
EcoT22I ATGCAT 2 cut(s) 301, 1056
EcoT38I GRGCYC 2 cut(s) 81, 869
FaeI CATG 2 cut(s) 652, 811
FalI AAGNNNNNCTT 2 cut(s) 152, 184
FatI CATG 2 cut(s) 648, 807
FauNDI CATATG 1 cut(s) 1131
FblI GTMKAC 2 cut(s) 180, 611
Fnu4HI GCNGC 5 cut(s) 19, 418, 528, 831, 1068
FokI GGATG 6 cut(s) 71, 863, 874, 1173, 1244, 1256
FriOI GRGCYC 2 cut(s) 81, 869
Fsp4HI GCNGC 5 cut(s) 19, 418, 528, 831, 1068
FspBI CTAG 5 cut(s) 414, 422, 812, 1077, 1288
GluI GCNGC 5 cut(s) 19, 418, 528, 831, 1068
GsuI CTGGAG 1 cut(s) 744
HaeIII GGCC 2 cut(s) 433, 756
HgaI GACGC 2 cut(s) 117, 804
Hin1II CATG 2 cut(s) 652, 811
HincII GTYRAC 2 cut(s) 1155, 1263
HindII GTYRAC 2 cut(s) 1155, 1263
HindIII AAGCTT 1 cut(s) 90
HinfI GANTC 2 cut(s) 888, 1126
HphI GGTGA 1 cut(s) 206
Hpy166II GTNNAC 5 cut(s) 181, 612, 1022, 1155, 1263
Hpy188I TCNGA 8 cut(s) 523, 738, 871, 893, 924, 940, 1038, 1191
Hpy188III TCNNGA 7 cut(s) 244, 293, 437, 479, 723, 848, 1145
Hpy8I GTNNAC 5 cut(s) 181, 612, 1022, 1155, 1263
HpyAV CCTTC 5 cut(s) 46, 217, 646, 655, 677
HpyCH4III ACNGT 1 cut(s) 332
HpyCH4IV ACGT 3 cut(s) 53, 64, 1183
HpyF10VI GCNNNNNNNGC 3 cut(s) 89, 233, 1073
HpyF3I CTNAG 5 cut(s) 102, 242, 560, 868, 906
HpySE526I ACGT 3 cut(s) 53, 64, 1183
Hsp92II CATG 2 cut(s) 652, 811
Kzo9I GATC 6 cut(s) 6, 265, 289, 439, 483, 940
LguI GCTCTTC 1 cut(s) 1131
LmnI GCTCC 2 cut(s) 50, 827
Lsp1109I GCAGC 4 cut(s) 429, 539, 817, 1054
LweI GCATC 7 cut(s) 286, 308, 514, 775, 889, 1079, 1195
MaeI CTAG 5 cut(s) 414, 422, 812, 1077, 1288
MaeII ACGT 3 cut(s) 53, 64, 1183
MaeIII GTNAC 4 cut(s) 194, 566, 637, 816
MalI GATC 6 cut(s) 8, 267, 291, 441, 485, 942
MbiI CCGCTC 1 cut(s) 18
MboI GATC 6 cut(s) 6, 265, 289, 439, 483, 940
MboII GAAGA 8 cut(s) 43, 90, 467, 510, 608, 1099, 1148, 1226
MflI RGATCY 1 cut(s) 439
MhlI GDGCHC 3 cut(s) 81, 869, 1024
MluCI AATT 6 cut(s) 280, 407, 460, 537, 699, 778
Mph1103I ATGCAT 2 cut(s) 301, 1056
MroXI GAANNNNTTC 1 cut(s) 35
MseI TTAA 3 cut(s) 159, 1044, 1101
MspA1I CMGCKG 1 cut(s) 106
Mva1269I GAATGC 4 cut(s) 329, 910, 1018, 1254
MwoI GCNNNNNNNGC 3 cut(s) 89, 233, 1073
NdeI CATATG 1 cut(s) 1131
NdeII GATC 6 cut(s) 6, 265, 289, 439, 483, 940
NheI GCTAGC 1 cut(s) 811
NlaIII CATG 2 cut(s) 652, 811
NlaIV GGNNCC 1 cut(s) 744
NmuCI GTSAC 3 cut(s) 194, 637, 816
NsiI ATGCAT 2 cut(s) 301, 1056
PaeR7I CTCGAG 1 cut(s) 435
PceI AGGCCT 1 cut(s) 433
PciSI GCTCTTC 1 cut(s) 1131
PctI GAATGC 4 cut(s) 329, 910, 1018, 1254
PdmI GAANNNNTTC 1 cut(s) 35
PfeI GAWTC 2 cut(s) 888, 1126
PkrI GCNGC 5 cut(s) 20, 419, 529, 832, 1069
PmaCI CACGTG 2 cut(s) 54, 65
PmlI CACGTG 2 cut(s) 54, 65
Ppu21I YACGTR 2 cut(s) 54, 65
Psp124BI GAGCTC 1 cut(s) 81
PspCI CACGTG 2 cut(s) 54, 65
PspEI GGTNACC 1 cut(s) 194
PspN4I GGNNCC 1 cut(s) 744
PsrI GAACNNNNNNTAC 4 cut(s) 363, 395, 975, 1007
PsuI RGATCY 1 cut(s) 439
PvuII CAGCTG 1 cut(s) 106
RsaI GTAC 2 cut(s) 710, 903
RsaNI GTAC 2 cut(s) 709, 902
SacI GAGCTC 1 cut(s) 81
SapI GCTCTTC 1 cut(s) 1131
SaqAI TTAA 3 cut(s) 159, 1044, 1101
SatI GCNGC 5 cut(s) 19, 418, 528, 831, 1068
Sau3AI GATC 6 cut(s) 6, 265, 289, 439, 483, 940
SduI GDGCHC 3 cut(s) 81, 869, 1024
SfaNI GCATC 7 cut(s) 286, 308, 514, 775, 889, 1079, 1195
SfcI CTRYAG 4 cut(s) 252, 328, 591, 630
Sfr274I CTCGAG 1 cut(s) 435
SlaI CTCGAG 1 cut(s) 435
SmlI CTYRAG 2 cut(s) 435, 1143
SmoI CTYRAG 2 cut(s) 435, 1143
Sse9I AATT 6 cut(s) 280, 407, 460, 537, 699, 778
SseBI AGGCCT 1 cut(s) 433
SsiI CCGC 2 cut(s) 18, 977
SspI AATATT 1 cut(s) 187
SspMI CTAG 5 cut(s) 414, 422, 812, 1077, 1288
SstI GAGCTC 1 cut(s) 81
StuI AGGCCT 1 cut(s) 433
TaaI ACNGT 1 cut(s) 332
TaiI ACGT 3 cut(s) 56, 67, 1186
TaqI TCGA 4 cut(s) 149, 436, 696, 1110
TasI AATT 6 cut(s) 280, 407, 460, 537, 699, 778
TatI WGTACW 1 cut(s) 708
TauI GCSGC 1 cut(s) 21
TfiI GAWTC 2 cut(s) 888, 1126
Tru1I TTAA 3 cut(s) 159, 1044, 1101
Tru9I TTAA 3 cut(s) 159, 1044, 1101
TscAI CASTG 3 cut(s) 337, 798, 1024
TseFI GTSAC 3 cut(s) 194, 637, 816
TseI GCWGC 4 cut(s) 417, 527, 830, 1067
Tsp45I GTSAC 3 cut(s) 194, 637, 816
TspDTI ATGAA 4 cut(s) 665, 903, 1227, 1260
TspRI CASTG 3 cut(s) 337, 798, 1024
VneI GTGCAC 1 cut(s) 1020
XapI RAATTY 4 cut(s) 280, 407, 699, 778
XhoI CTCGAG 1 cut(s) 435
XmiI GTMKAC 2 cut(s) 180, 611
XmnI GAANNNNTTC 1 cut(s) 35
XspI CTAG 5 cut(s) 414, 422, 812, 1077, 1288
Zsp2I ATGCAT 2 cut(s) 301, 1056
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.