Rmu_sc0002934.1_g000054

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002934.1
OG0018654
Physical Location & Seq
Forward (+)
215911 .. 218793
2883 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002934.1_g000054.1.cds

Sequence Viewer

Length: 624 bp
atgcagagggaccttgggctctttgacgatggaggagttcaaatcggagaggagatcgaagcagaggagcggctctggtggcttctggtcatgaaagggtcagagtgtgggagactgggagtgaaagggtcggagaggtgttggtacgaagtgggtgtagaacgaggtcagagccggagccactgtgaagaacgaggtcgctgccttcatgcactctggggttgctgcttctcacaccagttggtagtttccgtcagtatggacggggagtggagaagaggaagaaggagaacagtggagaaagaagataagaaagaagacggaggaaattttggaaaaaaactgaagcaggggtattctcgtcaatttacacaatggataccttacgtggcgctgagctggaaaggagtgactgacacgtcatcaagcaaccggaggaaatggaggagatggaccgccaacatcgtatcgttgacgactcctgaagaggcctgccgcctgtcgttgctctctaagaacttcaagttagcggcggaatccgacgccgtttgggacaagttccttccgcctgagacacccacgatcctgtcccagtccggcgaatctggattattggccgcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0030246 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

207

Amino Acids

23.59

Weight (kDa)

8.47

Isoelectric Point (pI)

57.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 418
AccBSI CCGCTC 1 cut(s) 70
AciI CCGC 7 cut(s) 70, 456, 496, 530, 533, 566, 618
AclWI GGATC 1 cut(s) 577
AcoI YGGCCR 1 cut(s) 615
AcsI RAATTY 1 cut(s) 328
AcuI CTGAAG 2 cut(s) 365, 504
AcyI GRCGYC 1 cut(s) 543
AfaI GTAC 1 cut(s) 146
AflIII ACRYGT 1 cut(s) 417
AgsI TTSAA 2 cut(s) 41, 523
AjiI CACGTC 1 cut(s) 420
AluBI AGCT 1 cut(s) 399
AluI AGCT 1 cut(s) 399
Alw26I GTCTC 2 cut(s) 106, 566
AlwI GGATC 1 cut(s) 577
AoxI GGCC 2 cut(s) 489, 615
ApeKI GCWGC 2 cut(s) 201, 225
ApoI RAATTY 1 cut(s) 328
AspLEI GCGC 1 cut(s) 394
AspS9I GGNCC 2 cut(s) 10, 453
AvaII GGWCC 2 cut(s) 10, 453
BanII GRGCYC 1 cut(s) 21
BbsI GAAGAC 1 cut(s) 324
BbvI GCAGC 2 cut(s) 188, 212
BccI CCATC 2 cut(s) 23, 444
BceAI ACGGC 1 cut(s) 530
BcgI CGANNNNNNTGC 2 cut(s) 183, 217
BciVI GTATCC 1 cut(s) 372
BcoDI GTCTC 2 cut(s) 106, 566
BfoI RGCGCY 1 cut(s) 395
BfuI GTATCC 1 cut(s) 372
BisI GCNGC 6 cut(s) 71, 202, 226, 496, 531, 618
BlpI GCTNAGC 1 cut(s) 395
BlsI GCNGC 6 cut(s) 72, 203, 227, 497, 532, 619
Bme18I GGWCC 2 cut(s) 10, 453
BmgBI CACGTC 1 cut(s) 420
BmgT120I GGNCC 2 cut(s) 10, 453
BmiI GGNNCC 2 cut(s) 11, 179
BmrI ACTGGG 2 cut(s) 125, 586
BmuI ACTGGG 2 cut(s) 125, 586
BpiI GAAGAC 1 cut(s) 324
Bpu1102I GCTNAGC 1 cut(s) 395
BsaAI YACGTR 1 cut(s) 388
BsaHI GRCGYC 1 cut(s) 543
BsaJI CCNNGG 1 cut(s) 13
BsaWI WCCGGW 1 cut(s) 432
BsaXI ACNNNNNCTCC 2 cut(s) 169, 199
Bse1I ACTGG 3 cut(s) 120, 238, 592
BseDI CCNNGG 1 cut(s) 13
BseMII CTCAG 2 cut(s) 386, 561
BseNI ACTGG 3 cut(s) 120, 238, 592
BseRI GAGGAG 4 cut(s) 48, 65, 80, 460
BseXI GCAGC 2 cut(s) 188, 212
BshFI GGCC 2 cut(s) 491, 617
BsiSI CCGG 3 cut(s) 175, 433, 597
BslFI GGGAC 3 cut(s) 23, 566, 574
BsmAI GTCTC 2 cut(s) 106, 566
BsmFI GGGAC 3 cut(s) 23, 566, 574
BsnI GGCC 2 cut(s) 491, 617
Bsp1286I GDGCHC 1 cut(s) 21
Bsp143I GATC 2 cut(s) 54, 582
Bsp1720I GCTNAGC 1 cut(s) 395
BspACI CCGC 7 cut(s) 70, 456, 496, 530, 533, 566, 618
BspANI GGCC 2 cut(s) 491, 617
BspCNI CTCAG 2 cut(s) 387, 562
BspHI TCATGA 1 cut(s) 90
BspLI GGNNCC 2 cut(s) 11, 179
BspPI GGATC 1 cut(s) 577
BsrBI CCGCTC 1 cut(s) 70
BsrI ACTGG 3 cut(s) 120, 238, 592
BssECI CCNNGG 1 cut(s) 13
BssMI GATC 2 cut(s) 54, 582
BssNI GRCGYC 1 cut(s) 543
BssT1I CCWWGG 1 cut(s) 13
Bst4CI ACNGT 2 cut(s) 185, 295
Bst6I CTCTTC 2 cut(s) 271, 480
BstACI GRCGYC 1 cut(s) 543
BstBAI YACGTR 1 cut(s) 388
BstC8I GCNNGC 1 cut(s) 493
BstDEI CTNAG 3 cut(s) 395, 513, 570
BstH2I RGCGCY 1 cut(s) 395
BstHHI GCGC 1 cut(s) 394
BstKTI GATC 2 cut(s) 57, 585
BstMAI GTCTC 2 cut(s) 106, 566
BstMBI GATC 2 cut(s) 54, 582
BstMWI GCNNNNNNNGC 1 cut(s) 79
BstV1I GCAGC 2 cut(s) 188, 212
BstV2I GAAGAC 1 cut(s) 324
BsuI GTATCC 1 cut(s) 372
BsuRI GGCC 2 cut(s) 491, 617
BtrI CACGTC 1 cut(s) 420
BtsIMutI CAGTG 2 cut(s) 181, 300
Cac8I GCNNGC 1 cut(s) 493
CciI TCATGA 1 cut(s) 90
CfoI GCGC 1 cut(s) 394
Cfr13I GGNCC 2 cut(s) 10, 453
CseI GACGC 1 cut(s) 551
Csp6I GTAC 1 cut(s) 145
CviAII CATG 2 cut(s) 91, 209
CviJI RGCY 8 cut(s) 19, 73, 82, 174, 180, 399, 491, 617
CviKI_1 RGCY 8 cut(s) 19, 73, 82, 174, 180, 399, 491, 617
CviQI GTAC 1 cut(s) 145
DdeI CTNAG 3 cut(s) 395, 513, 570
DpnI GATC 2 cut(s) 56, 584
DpnII GATC 2 cut(s) 54, 582
DrdI GACNNNNNNGTC 1 cut(s) 418
DseDI GACNNNNNNGTC 1 cut(s) 418
EaeI YGGCCR 1 cut(s) 615
Eam1104I CTCTTC 2 cut(s) 271, 480
EarI CTCTTC 2 cut(s) 271, 480
EciI GGCGGA 2 cut(s) 548, 555
Eco130I CCWWGG 1 cut(s) 13
Eco147I AGGCCT 1 cut(s) 491
Eco24I GRGCYC 1 cut(s) 21
Eco47I GGWCC 2 cut(s) 10, 453
Eco57I CTGAAG 2 cut(s) 365, 504
EcoO109I RGGNCCY 1 cut(s) 10
EcoT14I CCWWGG 1 cut(s) 13
EcoT38I GRGCYC 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 13
FaeI CATG 2 cut(s) 94, 212
FaiI YATR 3 cut(s) 92, 210, 260
FaqI GGGAC 3 cut(s) 23, 566, 574
FatI CATG 2 cut(s) 90, 208
Fnu4HI GCNGC 6 cut(s) 71, 202, 226, 496, 531, 618
FriOI GRGCYC 1 cut(s) 21
Fsp4HI GCNGC 6 cut(s) 71, 202, 226, 496, 531, 618
GlaI GCGC 1 cut(s) 393
GluI GCNGC 6 cut(s) 71, 202, 226, 496, 531, 618
HaeII RGCGCY 1 cut(s) 395
HaeIII GGCC 2 cut(s) 491, 617
HapII CCGG 3 cut(s) 175, 433, 597
HgaI GACGC 1 cut(s) 551
HhaI GCGC 1 cut(s) 394
Hin1I GRCGYC 1 cut(s) 543
Hin1II CATG 2 cut(s) 94, 212
Hin6I GCGC 1 cut(s) 392
HinP1I GCGC 1 cut(s) 392
HincII GTYRAC 1 cut(s) 474
HindII GTYRAC 1 cut(s) 474
HinfI GANTC 3 cut(s) 478, 536, 602
HpaII CCGG 3 cut(s) 175, 433, 597
Hpy166II GTNNAC 1 cut(s) 474
Hpy188I TCNGA 5 cut(s) 47, 103, 133, 171, 541
Hpy188III TCNNGA 3 cut(s) 91, 482, 606
Hpy8I GTNNAC 1 cut(s) 474
Hpy99I CGWCG 1 cut(s) 545
HpyAV CCTTC 3 cut(s) 215, 279, 572
HpyCH4III ACNGT 2 cut(s) 185, 295
HpyCH4IV ACGT 2 cut(s) 387, 419
HpyCH4V TGCA 2 cut(s) 4, 212
HpyF10VI GCNNNNNNNGC 1 cut(s) 79
HpyF3I CTNAG 3 cut(s) 395, 513, 570
HpySE526I ACGT 2 cut(s) 387, 419
Hsp92I GRCGYC 1 cut(s) 543
Hsp92II CATG 2 cut(s) 94, 212
HspAI GCGC 1 cut(s) 392
Kzo9I GATC 2 cut(s) 54, 582
LmnI GCTCC 2 cut(s) 67, 177
Lsp1109I GCAGC 2 cut(s) 188, 212
MaeII ACGT 2 cut(s) 387, 419
MaeIII GTNAC 1 cut(s) 409
MalI GATC 2 cut(s) 56, 584
MbiI CCGCTC 1 cut(s) 70
MboI GATC 2 cut(s) 54, 582
MboII GAAGA 6 cut(s) 200, 288, 294, 317, 329, 497
MhlI GDGCHC 1 cut(s) 21
MluCI AATT 2 cut(s) 328, 365
MlyI GAGTC 1 cut(s) 472
MmeI TCCRAC 2 cut(s) 111, 564
MspI CCGG 3 cut(s) 175, 433, 597
MwoI GCNNNNNNNGC 1 cut(s) 79
NdeII GATC 2 cut(s) 54, 582
NlaIII CATG 2 cut(s) 94, 212
NlaIV GGNNCC 2 cut(s) 11, 179
NmuCI GTSAC 1 cut(s) 409
PagI TCATGA 1 cut(s) 90
PceI AGGCCT 1 cut(s) 491
PfeI GAWTC 2 cut(s) 536, 602
PkrI GCNGC 6 cut(s) 72, 203, 227, 497, 532, 619
PleI GAGTC 1 cut(s) 472
PpsI GAGTC 1 cut(s) 472
Ppu21I YACGTR 1 cut(s) 388
PpuMI RGGWCCY 1 cut(s) 10
Psp5II RGGWCCY 1 cut(s) 10
PspN4I GGNNCC 2 cut(s) 11, 179
PspPI GGNCC 2 cut(s) 10, 453
PspPPI RGGWCCY 1 cut(s) 10
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
SatI GCNGC 6 cut(s) 71, 202, 226, 496, 531, 618
Sau3AI GATC 2 cut(s) 54, 582
Sau96I GGNCC 2 cut(s) 10, 453
SchI GAGTC 1 cut(s) 472
SduI GDGCHC 1 cut(s) 21
SetI ASST 8 cut(s) 15, 140, 169, 199, 385, 390, 401, 422
SinI GGWCC 2 cut(s) 10, 453
Sse9I AATT 2 cut(s) 328, 365
SseBI AGGCCT 1 cut(s) 491
SsiI CCGC 7 cut(s) 70, 456, 496, 530, 533, 566, 618
StuI AGGCCT 1 cut(s) 491
StyI CCWWGG 1 cut(s) 13
TaaI ACNGT 2 cut(s) 185, 295
TaiI ACGT 2 cut(s) 390, 422
TaqI TCGA 1 cut(s) 57
TasI AATT 2 cut(s) 328, 365
TauI GCSGC 4 cut(s) 73, 498, 533, 620
TfiI GAWTC 2 cut(s) 536, 602
TscAI CASTG 2 cut(s) 188, 300
TseFI GTSAC 1 cut(s) 409
TseI GCWGC 2 cut(s) 201, 225
Tsp45I GTSAC 1 cut(s) 409
TspDTI ATGAA 2 cut(s) 107, 197
TspGWI ACGGA 2 cut(s) 241, 336
TspRI CASTG 2 cut(s) 188, 300
VpaK11BI GGWCC 2 cut(s) 10, 453
XapI RAATTY 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.