Rh6AG105900

B3 DNA binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0018654
Physical Location & Seq
Reverse (-)
15576101 .. 15576649
549 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG105900.1

Sequence Viewer

Length: 330 bp
ATGTCTTTTTTGCTGAAAAGTACAAGGAACAGATCGACTGGAAGCGCCGTTATGGCAAGTACAAGCCCCAAAAGAAACCGAGGTCGGCGGAGGTTGAAGCGAGCAAAAGGAGCTCTAAGAGGCTATCAAAAATGTAAGATAAGGGATAGAAGACTCTGCTACGAGCTCCAATGTATTAATAAAGTGTCGTCTGATAAAGATTCATGCACTAAGACCTCTGGGCATCCCTTCCCAACACATTCTGAATATCCTGAAGAAAATGGAAAGACCACCTCAAAGAAAGCAACAAAAGAATGTCAGCCTGCTGATGGATCATGCAAGTCCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

109

Amino Acids

12.24

Weight (kDa)

10.21

Isoelectric Point (pI)

70.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 88
AclWI GGATC 1 cut(s) 319
AcuI CTGAAG 1 cut(s) 273
AfaI GTAC 2 cut(s) 22, 61
AfiI CCNNNNNNNGG 1 cut(s) 308
AgsI TTSAA 1 cut(s) 97
AluBI AGCT 2 cut(s) 113, 166
AluI AGCT 2 cut(s) 113, 166
Alw21I GWGCWC 2 cut(s) 115, 168
AlwI GGATC 1 cut(s) 319
AseI ATTAAT 1 cut(s) 177
AspLEI GCGC 1 cut(s) 47
BanII GRGCYC 2 cut(s) 115, 168
BbsI GAAGAC 1 cut(s) 157
Bbv12I GWGCWC 2 cut(s) 115, 168
BccI CCATC 1 cut(s) 302
BceAI ACGGC 1 cut(s) 32
BfoI RGCGCY 1 cut(s) 48
BglI GCCNNNNNGGC 1 cut(s) 53
BmsI GCATC 1 cut(s) 232
BpiI GAAGAC 1 cut(s) 157
BsaJI CCNNGG 1 cut(s) 79
Bsc4I CCNNNNNNNGG 1 cut(s) 308
Bse1I ACTGG 1 cut(s) 43
BseDI CCNNGG 1 cut(s) 79
BseGI GGATG 1 cut(s) 223
BseLI CCNNNNNNNGG 1 cut(s) 308
BseNI ACTGG 1 cut(s) 43
BsiHKAI GWGCWC 2 cut(s) 115, 168
BslI CCNNNNNNNGG 1 cut(s) 308
Bsp1286I GDGCHC 2 cut(s) 115, 168
Bsp143I GATC 2 cut(s) 32, 311
BspACI CCGC 1 cut(s) 88
BspPI GGATC 1 cut(s) 319
BsrI ACTGG 1 cut(s) 43
BssECI CCNNGG 1 cut(s) 79
BssMI GATC 2 cut(s) 32, 311
BstC8I GCNNGC 2 cut(s) 102, 303
BstDEI CTNAG 2 cut(s) 116, 210
BstF5I GGATG 1 cut(s) 223
BstH2I RGCGCY 1 cut(s) 48
BstHHI GCGC 1 cut(s) 47
BstKTI GATC 2 cut(s) 35, 314
BstMBI GATC 2 cut(s) 32, 311
BstMWI GCNNNNNNNGC 2 cut(s) 53, 110
BstV2I GAAGAC 1 cut(s) 157
BtsCI GGATG 1 cut(s) 223
Cac8I GCNNGC 2 cut(s) 102, 303
CfoI GCGC 1 cut(s) 47
Csp6I GTAC 2 cut(s) 21, 60
CviAII CATG 2 cut(s) 204, 315
CviJI RGCY 5 cut(s) 66, 113, 123, 166, 301
CviKI_1 RGCY 5 cut(s) 66, 113, 123, 166, 301
CviQI GTAC 2 cut(s) 21, 60
DdeI CTNAG 2 cut(s) 116, 210
DpnI GATC 2 cut(s) 34, 313
DpnII GATC 2 cut(s) 32, 311
EciI GGCGGA 1 cut(s) 103
Ecl136II GAGCTC 2 cut(s) 113, 166
Eco24I GRGCYC 2 cut(s) 115, 168
Eco53kI GAGCTC 2 cut(s) 113, 166
Eco57I CTGAAG 1 cut(s) 273
EcoICRI GAGCTC 2 cut(s) 113, 166
EcoT38I GRGCYC 2 cut(s) 115, 168
FaeI CATG 2 cut(s) 207, 318
FaiI YATR 3 cut(s) 53, 205, 316
FatI CATG 2 cut(s) 203, 314
FokI GGATG 1 cut(s) 210
FriOI GRGCYC 2 cut(s) 115, 168
GlaI GCGC 1 cut(s) 46
HaeII RGCGCY 1 cut(s) 48
HhaI GCGC 1 cut(s) 47
Hin1II CATG 2 cut(s) 207, 318
Hin6I GCGC 1 cut(s) 45
HinP1I GCGC 1 cut(s) 45
HinfI GANTC 2 cut(s) 153, 200
Hpy188I TCNGA 2 cut(s) 193, 244
Hpy188III TCNNGA 1 cut(s) 251
HpyAV CCTTC 1 cut(s) 238
HpyCH4V TGCA 2 cut(s) 207, 318
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 110
HpyF3I CTNAG 2 cut(s) 116, 210
Hsp92II CATG 2 cut(s) 207, 318
HspAI GCGC 1 cut(s) 45
Kzo9I GATC 2 cut(s) 32, 311
LmnI GCTCC 2 cut(s) 110, 171
LpnPI CCDG 4 cut(s) 24, 204, 264, 315
LweI GCATC 1 cut(s) 232
MalI GATC 2 cut(s) 34, 313
MboI GATC 2 cut(s) 32, 311
MboII GAAGA 2 cut(s) 162, 266
MhlI GDGCHC 2 cut(s) 115, 168
MlyI GAGTC 1 cut(s) 147
MnlI CCTC 5 cut(s) 74, 84, 113, 226, 283
MseI TTAA 1 cut(s) 177
MwoI GCNNNNNNNGC 2 cut(s) 53, 110
NdeII GATC 2 cut(s) 32, 311
NlaIII CATG 2 cut(s) 207, 318
PfeI GAWTC 1 cut(s) 200
PleI GAGTC 1 cut(s) 147
PpsI GAGTC 1 cut(s) 147
PshBI ATTAAT 1 cut(s) 177
Psp124BI GAGCTC 2 cut(s) 115, 168
RsaI GTAC 2 cut(s) 22, 61
RsaNI GTAC 2 cut(s) 21, 60
SacI GAGCTC 2 cut(s) 115, 168
SaqAI TTAA 1 cut(s) 177
Sau3AI GATC 2 cut(s) 32, 311
SchI GAGTC 1 cut(s) 147
SduI GDGCHC 2 cut(s) 115, 168
SetI ASST 6 cut(s) 85, 95, 115, 168, 218, 275
SfaNI GCATC 1 cut(s) 232
SsiI CCGC 1 cut(s) 88
SstI GAGCTC 2 cut(s) 115, 168
TaqI TCGA 1 cut(s) 35
TatI WGTACW 2 cut(s) 20, 59
TfiI GAWTC 1 cut(s) 200
Tru1I TTAA 1 cut(s) 177
Tru9I TTAA 1 cut(s) 177
TspDTI ATGAA 1 cut(s) 192
VspI ATTAAT 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.