Rh1DG079800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0018654
Physical Location & Seq
Reverse (-)
14545562 .. 14548738
3177 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG079800.1

Sequence Viewer

Length: 321 bp
ATGCGCCACCGCTTAGTGGCCGTACGGAAGAGTCCCGACTGGGTTACTTTCGCGGGTCGGCGGTCGAGAAACGGGTCGAGCATCTGGGATAGGGACCTTGGAGACGGAACCGATGGCGAATCTCCATCTACTCTAAGTTCAAAGAGGGACCTTGGGCTCTTCGGCGAAGTTGAGATCGGAGAGGAGATCGAAGCAGAGGAGCGGCTCCGATGGATTCTAGGCGTGAAAGGGTCCGAGGGGTGTTGGTACGAAGTGGGTGTAGAACGAGGTCAGAGCCGGAGTCACTGTGGAGAACGAGGTCGCTGCCTTCTTGGGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.89

Weight (kDa)

6.74

Isoelectric Point (pI)

70.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 202
AccII CGCG 1 cut(s) 53
AciI CCGC 4 cut(s) 10, 53, 61, 202
AcoI YGGCCR 1 cut(s) 18
AfaI GTAC 2 cut(s) 24, 248
AfiI CCNNNNNNNGG 1 cut(s) 16
AgsI TTSAA 1 cut(s) 141
Alw26I GTCTC 1 cut(s) 96
AoxI GGCC 1 cut(s) 18
ApeKI GCWGC 1 cut(s) 303
AspLEI GCGC 1 cut(s) 6
AspS9I GGNCC 3 cut(s) 94, 148, 231
AvaII GGWCC 3 cut(s) 94, 148, 231
BanII GRGCYC 1 cut(s) 159
BbvI GCAGC 1 cut(s) 290
BccI CCATC 3 cut(s) 107, 133, 204
BceAI ACGGC 1 cut(s) 5
BcgI CGANNNNNNTGC 2 cut(s) 285, 319
BcoDI GTCTC 1 cut(s) 96
BfaI CTAG 1 cut(s) 218
BisI GCNGC 2 cut(s) 203, 304
BlsI GCNGC 2 cut(s) 204, 305
Bme18I GGWCC 3 cut(s) 94, 148, 231
BmgT120I GGNCC 3 cut(s) 94, 148, 231
BmiI GGNNCC 5 cut(s) 95, 109, 149, 206, 232
BmrI ACTGGG 1 cut(s) 49
BmsI GCATC 1 cut(s) 90
BmuI ACTGGG 1 cut(s) 49
BsaJI CCNNGG 3 cut(s) 97, 151, 234
BsaXI ACNNNNNCTCC 2 cut(s) 271, 301
Bsc4I CCNNNNNNNGG 1 cut(s) 16
Bse1I ACTGG 1 cut(s) 44
BseDI CCNNGG 3 cut(s) 97, 151, 234
BseLI CCNNNNNNNGG 1 cut(s) 16
BseNI ACTGG 1 cut(s) 44
BseRI GAGGAG 2 cut(s) 197, 212
BseXI GCAGC 1 cut(s) 290
Bsh1236I CGCG 1 cut(s) 53
Bsh1285I CGRYCG 1 cut(s) 65
BshFI GGCC 1 cut(s) 20
BsiEI CGRYCG 1 cut(s) 65
BsiSI CCGG 1 cut(s) 277
BsiWI CGTACG 1 cut(s) 22
BslFI GGGAC 3 cut(s) 18, 107, 161
BslI CCNNNNNNNGG 1 cut(s) 16
BsmAI GTCTC 1 cut(s) 96
BsmBI CGTCTC 1 cut(s) 96
BsmFI GGGAC 3 cut(s) 18, 107, 161
BsnI GGCC 1 cut(s) 20
Bsp1286I GDGCHC 1 cut(s) 159
Bsp143I GATC 2 cut(s) 174, 186
BspACI CCGC 4 cut(s) 10, 53, 61, 202
BspANI GGCC 1 cut(s) 20
BspFNI CGCG 1 cut(s) 53
BspLI GGNNCC 5 cut(s) 95, 109, 149, 206, 232
BspQI GCTCTTC 1 cut(s) 164
BsrBI CCGCTC 1 cut(s) 202
BsrI ACTGG 1 cut(s) 44
BssECI CCNNGG 3 cut(s) 97, 151, 234
BssMI GATC 2 cut(s) 174, 186
BssT1I CCWWGG 2 cut(s) 97, 151
Bst4CI ACNGT 1 cut(s) 287
Bst6I CTCTTC 2 cut(s) 23, 164
BstDEI CTNAG 2 cut(s) 13, 134
BstFNI CGCG 1 cut(s) 53
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 2 cut(s) 177, 189
BstMAI GTCTC 1 cut(s) 96
BstMBI GATC 2 cut(s) 174, 186
BstMCI CGRYCG 1 cut(s) 65
BstUI CGCG 1 cut(s) 53
BstV1I GCAGC 1 cut(s) 290
BsuRI GGCC 1 cut(s) 20
BtsIMutI CAGTG 1 cut(s) 283
CfoI GCGC 1 cut(s) 6
Cfr13I GGNCC 3 cut(s) 94, 148, 231
Csp6I GTAC 2 cut(s) 23, 247
CviJI RGCY 4 cut(s) 20, 157, 205, 276
CviKI_1 RGCY 4 cut(s) 20, 157, 205, 276
CviQI GTAC 2 cut(s) 23, 247
DdeI CTNAG 2 cut(s) 13, 134
DpnI GATC 2 cut(s) 176, 188
DpnII GATC 2 cut(s) 174, 186
EaeI YGGCCR 1 cut(s) 18
Eam1104I CTCTTC 2 cut(s) 23, 164
EarI CTCTTC 2 cut(s) 23, 164
Eco130I CCWWGG 2 cut(s) 97, 151
Eco24I GRGCYC 1 cut(s) 159
Eco47I GGWCC 3 cut(s) 94, 148, 231
EcoO109I RGGNCCY 2 cut(s) 94, 148
EcoT14I CCWWGG 2 cut(s) 97, 151
EcoT38I GRGCYC 1 cut(s) 159
ErhI CCWWGG 2 cut(s) 97, 151
Esp3I CGTCTC 1 cut(s) 96
FaqI GGGAC 3 cut(s) 18, 107, 161
FauI CCCGC 1 cut(s) 46
Fnu4HI GCNGC 2 cut(s) 203, 304
FriOI GRGCYC 1 cut(s) 159
Fsp4HI GCNGC 2 cut(s) 203, 304
FspBI CTAG 1 cut(s) 218
GlaI GCGC 1 cut(s) 5
GluI GCNGC 2 cut(s) 203, 304
HaeIII GGCC 1 cut(s) 20
HapII CCGG 1 cut(s) 277
HhaI GCGC 1 cut(s) 6
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HinfI GANTC 4 cut(s) 31, 119, 214, 280
HpaII CCGG 1 cut(s) 277
Hpy188I TCNGA 4 cut(s) 179, 209, 235, 273
Hpy188III TCNNGA 2 cut(s) 35, 66
HpyAV CCTTC 1 cut(s) 317
HpyCH4III ACNGT 1 cut(s) 287
HpyF3I CTNAG 2 cut(s) 13, 134
HspAI GCGC 1 cut(s) 4
Kzo9I GATC 2 cut(s) 174, 186
LguI GCTCTTC 1 cut(s) 164
LmnI GCTCC 2 cut(s) 199, 210
LpnPI CCDG 3 cut(s) 25, 70, 290
Lsp1109I GCAGC 1 cut(s) 290
LweI GCATC 1 cut(s) 90
MaeI CTAG 1 cut(s) 218
MaeIII GTNAC 2 cut(s) 43, 281
MalI GATC 2 cut(s) 176, 188
MbiI CCGCTC 1 cut(s) 202
MboI GATC 2 cut(s) 174, 186
MboII GAAGA 2 cut(s) 40, 151
MhlI GDGCHC 1 cut(s) 159
MlyI GAGTC 2 cut(s) 40, 289
MnlI CCTC 6 cut(s) 138, 175, 190, 229, 260, 290
MspI CCGG 1 cut(s) 277
MvnI CGCG 1 cut(s) 53
NdeII GATC 2 cut(s) 174, 186
NlaIV GGNNCC 5 cut(s) 95, 109, 149, 206, 232
NmuCI GTSAC 1 cut(s) 281
PciSI GCTCTTC 1 cut(s) 164
PfeI GAWTC 2 cut(s) 119, 214
Pfl23II CGTACG 1 cut(s) 22
PkrI GCNGC 2 cut(s) 204, 305
PleI GAGTC 2 cut(s) 39, 288
PpsI GAGTC 2 cut(s) 39, 288
PpuMI RGGWCCY 2 cut(s) 94, 148
Psp5II RGGWCCY 2 cut(s) 94, 148
PspLI CGTACG 1 cut(s) 22
PspN4I GGNNCC 5 cut(s) 95, 109, 149, 206, 232
PspPI GGNCC 3 cut(s) 94, 148, 231
PspPPI RGGWCCY 2 cut(s) 94, 148
RsaI GTAC 2 cut(s) 24, 248
RsaNI GTAC 2 cut(s) 23, 247
SapI GCTCTTC 1 cut(s) 164
SatI GCNGC 2 cut(s) 203, 304
Sau3AI GATC 2 cut(s) 174, 186
Sau96I GGNCC 3 cut(s) 94, 148, 231
SchI GAGTC 2 cut(s) 40, 289
SduI GDGCHC 1 cut(s) 159
SetI ASST 4 cut(s) 99, 153, 271, 301
SfaNI GCATC 1 cut(s) 90
SinI GGWCC 3 cut(s) 94, 148, 231
SsiI CCGC 4 cut(s) 10, 53, 61, 202
SspMI CTAG 1 cut(s) 218
StyI CCWWGG 2 cut(s) 97, 151
TaaI ACNGT 1 cut(s) 287
TaqI TCGA 3 cut(s) 65, 77, 189
TauI GCSGC 1 cut(s) 205
TfiI GAWTC 2 cut(s) 119, 214
TscAI CASTG 1 cut(s) 290
TseFI GTSAC 1 cut(s) 281
TseI GCWGC 1 cut(s) 303
Tsp45I GTSAC 1 cut(s) 281
TspGWI ACGGA 2 cut(s) 40, 120
TspRI CASTG 1 cut(s) 290
VpaK11BI GGWCC 3 cut(s) 94, 148, 231
XspI CTAG 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.