Rh1CG275600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0018654
Physical Location & Seq
Reverse (-)
54345742 .. 54346095
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG275600.1

Sequence Viewer

Length: 354 bp
ATGCAGAGGGACCTTGGGCTCTTCGACGACGGCGGAGTTCAGATCGGAGAGGAGATCGAAGAAGAGGAGCAGCTCCGGTGCCTTCTGGGCATGAAAGCGTCGGAGTGTGGGAGACTAGGAGTGAAAGGGTCGGAGGGGTGTTGGTACGAAGTGGGTGTAGAACGAGGTCGGAGCAGGAGCCGGAGCTGCTGTGGAGAACTAGGTCGCTGCCTTCATGCACTCTGGGGTTGCTGCTTCTCACACCAGTTGGTAGTTTCCGTCAGTATGGGTATGTTTTGTAGAAAAGTTCAATTCTTTGAGGTGGTAACCTGCAAAAGGAGGCTTCTTGATCATCTGGGTTTTCTAGATATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

13.17

Weight (kDa)

5.91

Isoelectric Point (pI)

63.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 317
AccB1I GGYRCC 1 cut(s) 78
AciI CCGC 1 cut(s) 33
AfaI GTAC 1 cut(s) 146
AfiI CCNNNNNNNGG 1 cut(s) 315
AgsI TTSAA 1 cut(s) 290
AluBI AGCT 2 cut(s) 73, 186
AluI AGCT 2 cut(s) 73, 186
Alw26I GTCTC 1 cut(s) 106
ApeKI GCWGC 4 cut(s) 70, 186, 207, 231
AspS9I GGNCC 1 cut(s) 10
AvaII GGWCC 1 cut(s) 10
BanI GGYRCC 1 cut(s) 78
BanII GRGCYC 1 cut(s) 21
BbvI GCAGC 4 cut(s) 82, 173, 194, 218
BceAI ACGGC 1 cut(s) 46
BclI TGATCA 1 cut(s) 328
BcoDI GTCTC 1 cut(s) 106
BfaI CTAG 3 cut(s) 116, 200, 344
BfuAI ACCTGC 1 cut(s) 317
BglI GCCNNNNNGGC 1 cut(s) 87
BisI GCNGC 4 cut(s) 71, 187, 208, 232
BlsI GCNGC 4 cut(s) 72, 188, 209, 233
Bme18I GGWCC 1 cut(s) 10
BmgT120I GGNCC 1 cut(s) 10
BmiI GGNNCC 3 cut(s) 11, 80, 179
BsaJI CCNNGG 1 cut(s) 13
BsaWI WCCGGW 1 cut(s) 75
BsaXI ACNNNNNCTCC 2 cut(s) 175, 205
Bsc4I CCNNNNNNNGG 1 cut(s) 315
Bse1I ACTGG 1 cut(s) 244
BseDI CCNNGG 1 cut(s) 13
BseLI CCNNNNNNNGG 1 cut(s) 315
BseNI ACTGG 1 cut(s) 244
BseRI GAGGAG 2 cut(s) 65, 80
BseXI GCAGC 4 cut(s) 82, 173, 194, 218
BshNI GGYRCC 1 cut(s) 78
BsiSI CCGG 2 cut(s) 76, 181
BslFI GGGAC 1 cut(s) 23
BslI CCNNNNNNNGG 1 cut(s) 315
BsmAI GTCTC 1 cut(s) 106
BsmFI GGGAC 1 cut(s) 23
Bsp1286I GDGCHC 1 cut(s) 21
Bsp143I GATC 3 cut(s) 42, 54, 328
BspACI CCGC 1 cut(s) 33
BspLI GGNNCC 3 cut(s) 11, 80, 179
BspMI ACCTGC 1 cut(s) 317
BspQI GCTCTTC 1 cut(s) 26
BspT107I GGYRCC 1 cut(s) 78
BsrI ACTGG 1 cut(s) 244
BssECI CCNNGG 1 cut(s) 13
BssMI GATC 3 cut(s) 42, 54, 328
BssT1I CCWWGG 1 cut(s) 13
Bst6I CTCTTC 2 cut(s) 26, 57
BstEII GGTNACC 1 cut(s) 304
BstENI CCTNNNNNAGG 1 cut(s) 313
BstKTI GATC 3 cut(s) 45, 57, 331
BstMAI GTCTC 1 cut(s) 106
BstMBI GATC 3 cut(s) 42, 54, 328
BstMWI GCNNNNNNNGC 2 cut(s) 87, 186
BstPI GGTNACC 1 cut(s) 304
BstV1I GCAGC 4 cut(s) 82, 173, 194, 218
BveI ACCTGC 1 cut(s) 317
Cfr13I GGNCC 1 cut(s) 10
CseI GACGC 1 cut(s) 87
Csp6I GTAC 1 cut(s) 145
CviAII CATG 2 cut(s) 91, 215
CviJI RGCY 5 cut(s) 19, 73, 180, 186, 322
CviKI_1 RGCY 5 cut(s) 19, 73, 180, 186, 322
CviQI GTAC 1 cut(s) 145
DpnI GATC 3 cut(s) 44, 56, 330
DpnII GATC 3 cut(s) 42, 54, 328
Eam1104I CTCTTC 2 cut(s) 26, 57
EarI CTCTTC 2 cut(s) 26, 57
EciI GGCGGA 1 cut(s) 48
Eco130I CCWWGG 1 cut(s) 13
Eco24I GRGCYC 1 cut(s) 21
Eco47I GGWCC 1 cut(s) 10
Eco91I GGTNACC 1 cut(s) 304
EcoNI CCTNNNNNAGG 1 cut(s) 313
EcoO109I RGGNCCY 1 cut(s) 10
EcoO65I GGTNACC 1 cut(s) 304
EcoT14I CCWWGG 1 cut(s) 13
EcoT38I GRGCYC 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 13
FaeI CATG 2 cut(s) 94, 218
FaiI YATR 4 cut(s) 92, 216, 266, 272
FaqI GGGAC 1 cut(s) 23
FatI CATG 2 cut(s) 90, 214
FbaI TGATCA 1 cut(s) 328
Fnu4HI GCNGC 4 cut(s) 71, 187, 208, 232
FriOI GRGCYC 1 cut(s) 21
Fsp4HI GCNGC 4 cut(s) 71, 187, 208, 232
FspBI CTAG 3 cut(s) 116, 200, 344
GluI GCNGC 4 cut(s) 71, 187, 208, 232
HapII CCGG 2 cut(s) 76, 181
HgaI GACGC 1 cut(s) 87
Hin1II CATG 2 cut(s) 94, 218
HpaII CCGG 2 cut(s) 76, 181
Hpy188I TCNGA 5 cut(s) 42, 47, 103, 133, 171
Hpy188III TCNNGA 2 cut(s) 326, 344
Hpy99I CGWCG 3 cut(s) 29, 32, 103
HpyAV CCTTC 2 cut(s) 92, 221
HpyCH4V TGCA 3 cut(s) 4, 218, 312
HpyF10VI GCNNNNNNNGC 2 cut(s) 87, 186
Hsp92II CATG 2 cut(s) 94, 218
Ksp22I TGATCA 1 cut(s) 328
Kzo9I GATC 3 cut(s) 42, 54, 328
LguI GCTCTTC 1 cut(s) 26
LmnI GCTCC 5 cut(s) 67, 78, 171, 177, 183
LpnPI CCDG 8 cut(s) 71, 89, 160, 194, 208, 257, 320, 322
Lsp1109I GCAGC 4 cut(s) 82, 173, 194, 218
MaeI CTAG 3 cut(s) 116, 200, 344
MaeIII GTNAC 1 cut(s) 304
MalI GATC 3 cut(s) 44, 56, 330
MboI GATC 3 cut(s) 42, 54, 328
MboII GAAGA 3 cut(s) 13, 71, 74
MhlI GDGCHC 1 cut(s) 21
MluCI AATT 1 cut(s) 290
MmeI TCCRAC 3 cut(s) 81, 111, 149
MnlI CCTC 6 cut(s) 43, 58, 127, 158, 292, 312
MspI CCGG 2 cut(s) 76, 181
MwoI GCNNNNNNNGC 2 cut(s) 87, 186
NdeII GATC 3 cut(s) 42, 54, 328
NlaIII CATG 2 cut(s) 94, 218
NlaIV GGNNCC 3 cut(s) 11, 80, 179
PciSI GCTCTTC 1 cut(s) 26
PkrI GCNGC 4 cut(s) 72, 188, 209, 233
PpuMI RGGWCCY 1 cut(s) 10
Psp5II RGGWCCY 1 cut(s) 10
PspEI GGTNACC 1 cut(s) 304
PspN4I GGNNCC 3 cut(s) 11, 80, 179
PspPI GGNCC 1 cut(s) 10
PspPPI RGGWCCY 1 cut(s) 10
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
SapI GCTCTTC 1 cut(s) 26
SatI GCNGC 4 cut(s) 71, 187, 208, 232
Sau3AI GATC 3 cut(s) 42, 54, 328
Sau96I GGNCC 1 cut(s) 10
SduI GDGCHC 1 cut(s) 21
SetI ASST 7 cut(s) 15, 75, 169, 188, 205, 303, 311
SinI GGWCC 1 cut(s) 10
Sse9I AATT 1 cut(s) 290
SsiI CCGC 1 cut(s) 33
SspMI CTAG 3 cut(s) 116, 200, 344
StyI CCWWGG 1 cut(s) 13
TaqI TCGA 2 cut(s) 24, 57
TasI AATT 1 cut(s) 290
TseI GCWGC 4 cut(s) 70, 186, 207, 231
TspDTI ATGAA 2 cut(s) 107, 203
TspGWI ACGGA 1 cut(s) 247
VpaK11BI GGWCC 1 cut(s) 10
XagI CCTNNNNNAGG 1 cut(s) 313
XbaI TCTAGA 1 cut(s) 343
XspI CTAG 3 cut(s) 116, 200, 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.