Rh6BG100300

B3 DNA binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0018654
Physical Location & Seq
Reverse (-)
15699694 .. 15701783
2090 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG100300.1

Sequence Viewer

Length: 339 bp
ATGCAGAGGGACCTTGGGCTTTTCGGCGACGGCGGAGTTGAGATCGAAGCAGAGGAGTGGCTTCGGTGGCTTCTGGGCGTGAAAGGGTCTGAATGTGGGAGACTGGGAGTGAAAGGGTTGGAGGGGTGTTGGTACGAAGTGGGTGCAGAACGAGGTCGGAGTCGCTGCCTTCTGGGCCAATGTATTAATAAAGTGTCATCTGATAAAGATTCATACACTGAGACCTCTGGGCATCCCTTCCCAACACATTCTGAATATCCTGAAGAAAATGGAAAGACCACCTCAAAGAAAGCAACAAAAGAATGTCAGCCTGCTGATGGATCATGCAAGTCCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

112

Amino Acids

12.27

Weight (kDa)

5.72

Isoelectric Point (pI)

58.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 33
AclWI GGATC 1 cut(s) 328
AcuI CTGAAG 1 cut(s) 282
AfaI GTAC 1 cut(s) 134
AfiI CCNNNNNNNGG 1 cut(s) 317
Alw26I GTCTC 2 cut(s) 94, 215
AlwI GGATC 1 cut(s) 328
AoxI GGCC 1 cut(s) 175
ApeKI GCWGC 1 cut(s) 165
AseI ATTAAT 1 cut(s) 186
AspS9I GGNCC 2 cut(s) 10, 175
AvaII GGWCC 1 cut(s) 10
BbvI GCAGC 1 cut(s) 152
BccI CCATC 1 cut(s) 311
BceAI ACGGC 1 cut(s) 46
BcgI CGANNNNNNTGC 2 cut(s) 125, 159
BcoDI GTCTC 2 cut(s) 94, 215
BglI GCCNNNNNGGC 1 cut(s) 174
BisI GCNGC 1 cut(s) 166
BlsI GCNGC 1 cut(s) 167
Bme18I GGWCC 1 cut(s) 10
BmgT120I GGNCC 2 cut(s) 10, 175
BmiI GGNNCC 1 cut(s) 11
BmrI ACTGGG 1 cut(s) 113
BmsI GCATC 1 cut(s) 241
BmuI ACTGGG 1 cut(s) 113
BsaI GGTCTC 1 cut(s) 215
BsaJI CCNNGG 1 cut(s) 13
Bsc4I CCNNNNNNNGG 1 cut(s) 317
Bse1I ACTGG 1 cut(s) 108
BseDI CCNNGG 1 cut(s) 13
BseGI GGATG 1 cut(s) 232
BseLI CCNNNNNNNGG 1 cut(s) 317
BseMII CTCAG 1 cut(s) 210
BseNI ACTGG 1 cut(s) 108
BseRI GAGGAG 1 cut(s) 68
BseXI GCAGC 1 cut(s) 152
BsgI GTGCAG 1 cut(s) 165
BshFI GGCC 1 cut(s) 177
BslFI GGGAC 1 cut(s) 23
BslI CCNNNNNNNGG 1 cut(s) 317
BsmAI GTCTC 2 cut(s) 94, 215
BsmFI GGGAC 1 cut(s) 23
BsnI GGCC 1 cut(s) 177
Bso31I GGTCTC 1 cut(s) 215
Bsp143I GATC 2 cut(s) 42, 320
BspACI CCGC 1 cut(s) 33
BspANI GGCC 1 cut(s) 177
BspCNI CTCAG 1 cut(s) 211
BspLI GGNNCC 1 cut(s) 11
BspPI GGATC 1 cut(s) 328
BspTNI GGTCTC 1 cut(s) 215
BsrI ACTGG 1 cut(s) 108
BssECI CCNNGG 1 cut(s) 13
BssMI GATC 2 cut(s) 42, 320
BssT1I CCWWGG 1 cut(s) 13
BstC8I GCNNGC 1 cut(s) 312
BstDEI CTNAG 1 cut(s) 219
BstF5I GGATG 1 cut(s) 232
BstKTI GATC 2 cut(s) 45, 323
BstMAI GTCTC 2 cut(s) 94, 215
BstMBI GATC 2 cut(s) 42, 320
BstMWI GCNNNNNNNGC 2 cut(s) 67, 174
BstV1I GCAGC 1 cut(s) 152
BsuRI GGCC 1 cut(s) 177
BtsCI GGATG 1 cut(s) 232
BtsIMutI CAGTG 1 cut(s) 216
Cac8I GCNNGC 1 cut(s) 312
Cfr13I GGNCC 2 cut(s) 10, 175
Csp6I GTAC 1 cut(s) 133
CviAII CATG 1 cut(s) 324
CviJI RGCY 5 cut(s) 19, 61, 70, 177, 310
CviKI_1 RGCY 5 cut(s) 19, 61, 70, 177, 310
CviQI GTAC 1 cut(s) 133
DdeI CTNAG 1 cut(s) 219
DpnI GATC 2 cut(s) 44, 322
DpnII GATC 2 cut(s) 42, 320
EciI GGCGGA 1 cut(s) 48
Eco130I CCWWGG 1 cut(s) 13
Eco31I GGTCTC 1 cut(s) 215
Eco47I GGWCC 1 cut(s) 10
Eco57I CTGAAG 1 cut(s) 282
EcoO109I RGGNCCY 1 cut(s) 10
EcoT14I CCWWGG 1 cut(s) 13
ErhI CCWWGG 1 cut(s) 13
FaeI CATG 1 cut(s) 327
FaiI YATR 2 cut(s) 214, 325
FaqI GGGAC 1 cut(s) 23
FatI CATG 1 cut(s) 323
Fnu4HI GCNGC 1 cut(s) 166
FokI GGATG 1 cut(s) 219
Fsp4HI GCNGC 1 cut(s) 166
GluI GCNGC 1 cut(s) 166
HaeIII GGCC 1 cut(s) 177
Hin1II CATG 1 cut(s) 327
HinfI GANTC 2 cut(s) 160, 209
Hpy188I TCNGA 4 cut(s) 91, 159, 202, 253
Hpy188III TCNNGA 1 cut(s) 260
Hpy99I CGWCG 1 cut(s) 32
HpyAV CCTTC 2 cut(s) 179, 247
HpyCH4V TGCA 3 cut(s) 4, 146, 327
HpyF10VI GCNNNNNNNGC 2 cut(s) 67, 174
HpyF3I CTNAG 1 cut(s) 219
Hsp92II CATG 1 cut(s) 327
Kzo9I GATC 2 cut(s) 42, 320
LpnPI CCDG 6 cut(s) 59, 89, 158, 213, 273, 324
Lsp1109I GCAGC 1 cut(s) 152
LweI GCATC 1 cut(s) 241
MalI GATC 2 cut(s) 44, 322
MboI GATC 2 cut(s) 42, 320
MboII GAAGA 1 cut(s) 275
MlyI GAGTC 1 cut(s) 169
MmeI TCCRAC 2 cut(s) 99, 137
MnlI CCTC 5 cut(s) 46, 115, 146, 235, 292
MseI TTAA 1 cut(s) 186
MwoI GCNNNNNNNGC 2 cut(s) 67, 174
NdeII GATC 2 cut(s) 42, 320
NlaIII CATG 1 cut(s) 327
NlaIV GGNNCC 1 cut(s) 11
PfeI GAWTC 1 cut(s) 209
PkrI GCNGC 1 cut(s) 167
PleI GAGTC 1 cut(s) 168
PpsI GAGTC 1 cut(s) 168
PpuMI RGGWCCY 1 cut(s) 10
PshBI ATTAAT 1 cut(s) 186
Psp5II RGGWCCY 1 cut(s) 10
PspN4I GGNNCC 1 cut(s) 11
PspPI GGNCC 2 cut(s) 10, 175
PspPPI RGGWCCY 1 cut(s) 10
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
SaqAI TTAA 1 cut(s) 186
SatI GCNGC 1 cut(s) 166
Sau3AI GATC 2 cut(s) 42, 320
Sau96I GGNCC 2 cut(s) 10, 175
SchI GAGTC 1 cut(s) 169
SetI ASST 4 cut(s) 15, 157, 227, 284
SfaNI GCATC 1 cut(s) 241
SgeI CNNG 9 cut(s) 26, 86, 91, 116, 164, 185, 240, 272, 323
SinI GGWCC 1 cut(s) 10
SsiI CCGC 1 cut(s) 33
StyI CCWWGG 1 cut(s) 13
TaqI TCGA 1 cut(s) 45
TfiI GAWTC 1 cut(s) 209
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TscAI CASTG 1 cut(s) 223
TseI GCWGC 1 cut(s) 165
TspDTI ATGAA 1 cut(s) 201
TspRI CASTG 1 cut(s) 223
VpaK11BI GGWCC 1 cut(s) 10
VspI ATTAAT 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.