Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002935.1

Orthogroup ID

OG0019029

Physical Location & Seq

Genomic Coordinates Forward (+)

57631 .. 59315

Gene Structure 1685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

atgtccttctcccccacccctaaagcgtatcgatgtcctgctcccccaaatcgattcaaccttatcagaggtctggaagcggtcgtaggcaacaacaatttgatatctcccccaatttctaagcggaaaatctttgtgcttccagattccagcattgttgacagggaaagtggttgttgtgatttcaccattgataagcttgatgcacgatcagtgcttaaagctggcaaaacatggggtttctgctgctttcttggatctggacaacctgatagaattgtggaaaatcaagcaatgagaggcatgtacaacataatatacgtttgccctgagacaatattaagactgataaaaccactccaaaagttggcagaaatacgtggaattgctctttttgcaattgatgaagtgcattgtgtttcaaagtggggccatgattttcggcctgactacaggagattgtctgagttgcgaaagaacttcagtgctagcaatttaaaattcttaaaattcgatataccactgatggcattaactgctaccgccacaattcaggttcgtgaagacattcttaagtcattgtccatgtcaaaggaaacaaaagttgtgcttacttcatttttccggccgaatctaaggttcagggtacagcatagtagaacatcaacatcatcatatgagaatgatttttatgacttgatagacatgtatacgggcaagagaggaaaaggtgaaaagaaacaaatgatcatctcagaagaagtaaacgaagcgctggacagctcatctaacagtagtatgtcagaggctgattgcatttcagagcatgatttggacaatatcgaggatggtaattccgacagacatgatgaagcaatttcactccaggaaaatggttcaagtgcttcaaagggaagggagctgtcagttgactacttggaaaatgatgttgacatctttcagagtgttaatgattgggatggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C RecQ_Zn_bind

Protein Analysis

328

Amino Acids

37.03

Weight (kDa)

5.69

Isoelectric Point (pI)

40.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	81 - 187	4e-08	DEAD/DEAH box helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019029)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0295551
rosa_laevigata	RLG00000009400
rosa_multiflora	Rmu_sc0002935.1_g000010 Rmu_sc0016819.1_g000001 Rmu_sc0031479.1_g000001
rosa_samantha	Rh5BG325300 Rh5BG493900 Rh5DG336100 Rh6CG379700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	367
AccI	GTMKAC	1 cut(s)	710
AciI	CCGC	3 cut(s)	80, 124, 543
AclWI	GGATC	1 cut(s)	265
AcoI	YGGCCR	1 cut(s)	626
AcsI	RAATTY	2 cut(s)	500, 509
AcuI	CTGAAG	1 cut(s)	466
AfaI	GTAC	2 cut(s)	308, 648
AfeI	AGCGCT	1 cut(s)	774
AfiI	CCNNNNNNNGG	1 cut(s)	367
AflII	CTTAAG	1 cut(s)	572
AflIII	ACRYGT	1 cut(s)	705
AgsI	TTSAA	4 cut(s)	58, 423, 900, 909
AjnI	CCWGG	1 cut(s)	885
AluBI	AGCT	4 cut(s)	199, 224, 783, 922
AluI	AGCT	4 cut(s)	199, 224, 783, 922
Alw26I	GTCTC	1 cut(s)	326
AlwI	GGATC	1 cut(s)	265
AlwNI	CAGNNNCTG	1 cut(s)	809
Aor51HI	AGCGCT	1 cut(s)	774
AoxI	GGCC	3 cut(s)	430, 443, 626
ApeKI	GCWGC	1 cut(s)	246
ApoI	RAATTY	2 cut(s)	500, 509
Asp700I	GAANNNNTTC	1 cut(s)	567
AspLEI	GCGC	1 cut(s)	775
AspS9I	GGNCC	1 cut(s)	430
AsuHPI	GGTGA	2 cut(s)	178, 743
AsuNHI	GCTAGC	1 cut(s)	488
BbsI	GAAGAC	1 cut(s)	570
BbvI	GCAGC	1 cut(s)	233
BccI	CCATC	3 cut(s)	520, 842, 974
BciT130I	CCWGG	1 cut(s)	887
BclI	TGATCA	1 cut(s)	747
BcoDI	GTCTC	1 cut(s)	326
BfaI	CTAG	1 cut(s)	489
BfmI	CTRYAG	1 cut(s)	451
BfoI	RGCGCY	1 cut(s)	776
BfrI	CTTAAG	1 cut(s)	572
BisI	GCNGC	1 cut(s)	247
BlsI	GCNGC	1 cut(s)	248
Bme1390I	CCNGG	1 cut(s)	887
BmgT120I	GGNCC	1 cut(s)	430
BmiI	GGNNCC	1 cut(s)	431
BmrFI	CCNGG	1 cut(s)	887
BmsI	GCATC	1 cut(s)	193
BmtI	GCTAGC	1 cut(s)	492
BpiI	GAAGAC	1 cut(s)	570
BpmI	CTGGAG	1 cut(s)	869
Bsa29I	ATCGAT	2 cut(s)	31, 52
BsaAI	YACGTR	1 cut(s)	380
Bsc4I	CCNNNNNNNGG	1 cut(s)	367
Bse3DI	GCAATG	1 cut(s)	300
BseBI	CCWGG	1 cut(s)	887
BseCI	ATCGAT	2 cut(s)	31, 52
BseGI	GGATG	2 cut(s)	853, 985
BseLI	CCNNNNNNNGG	1 cut(s)	367
BseMI	GCAATG	1 cut(s)	300
BseMII	CTCAG	3 cut(s)	321, 456, 768
BseX3I	CGGCCG	1 cut(s)	626
BseXI	GCAGC	1 cut(s)	233
Bsh1285I	CGRYCG	2 cut(s)	84, 629
BshFI	GGCC	3 cut(s)	432, 445, 628
BshVI	ATCGAT	2 cut(s)	31, 52
BsiEI	CGRYCG	2 cut(s)	84, 629
BsiSI	CCGG	1 cut(s)	625
BslI	CCNNNNNNNGG	1 cut(s)	367
BsmAI	GTCTC	1 cut(s)	326
BsnI	GGCC	3 cut(s)	432, 445, 628
Bsp1407I	TGTACA	1 cut(s)	306
Bsp143I	GATC	3 cut(s)	209, 257, 747
BspACI	CCGC	3 cut(s)	80, 124, 543
BspANI	GGCC	3 cut(s)	432, 445, 628
BspCNI	CTCAG	3 cut(s)	322, 457, 767
BspDI	ATCGAT	2 cut(s)	31, 52
BspLI	GGNNCC	1 cut(s)	431
BspOI	GCTAGC	1 cut(s)	492
BspPI	GGATC	1 cut(s)	265
BspTI	CTTAAG	1 cut(s)	572
BsrDI	GCAATG	1 cut(s)	300
BsrGI	TGTACA	1 cut(s)	306
BssMI	GATC	3 cut(s)	209, 257, 747
BssNAI	GTATAC	1 cut(s)	711
Bst1107I	GTATAC	1 cut(s)	711
Bst2UI	CCWGG	1 cut(s)	887
Bst4CI	ACNGT	1 cut(s)	794
BstAFI	CTTAAG	1 cut(s)	572
BstAPI	GCANNNNNTGC	1 cut(s)	536
BstAUI	TGTACA	1 cut(s)	306
BstBAI	YACGTR	1 cut(s)	380
BstC8I	GCNNGC	2 cut(s)	226, 490
BstDEI	CTNAG	5 cut(s)	120, 330, 465, 635, 754
BstF5I	GGATG	2 cut(s)	853, 985
BstH2I	RGCGCY	1 cut(s)	776
BstHHI	GCGC	1 cut(s)	775
BstKTI	GATC	3 cut(s)	212, 260, 750
BstMAI	GTCTC	1 cut(s)	326
BstMBI	GATC	3 cut(s)	209, 257, 747
BstMCI	CGRYCG	2 cut(s)	84, 629
BstMWI	GCNNNNNNNGC	2 cut(s)	395, 536
BstNI	CCWGG	1 cut(s)	887
BstNSI	RCATGY	2 cut(s)	307, 709
BstSCI	CCNGG	1 cut(s)	885
BstSFI	CTRYAG	1 cut(s)	451
BstV1I	GCAGC	1 cut(s)	233
BstV2I	GAAGAC	1 cut(s)	570
BstX2I	RGATCY	1 cut(s)	257
BstXI	CCANNNNNNTGG	1 cut(s)	893
BstYI	RGATCY	1 cut(s)	257
BstZ17I	GTATAC	1 cut(s)	711
BstZI	CGGCCG	1 cut(s)	626
Bsu15I	ATCGAT	2 cut(s)	31, 52
BsuRI	GGCC	3 cut(s)	432, 445, 628
BsuTUI	ATCGAT	2 cut(s)	31, 52
BtsCI	GGATG	2 cut(s)	853, 985
BtsIMutI	CAGTG	3 cut(s)	219, 490, 521
Cac8I	GCNNGC	2 cut(s)	226, 490
CaiI	CAGNNNCTG	1 cut(s)	809
CfoI	GCGC	1 cut(s)	775
Cfr13I	GGNCC	1 cut(s)	430
ClaI	ATCGAT	2 cut(s)	31, 52
Csp6I	GTAC	2 cut(s)	307, 647
CviAII	CATG	7 cut(s)	234, 304, 434, 586, 706, 827, 866
CviJI	RGCY	8 cut(s)	199, 224, 432, 445, 628, 783, 809, 922
CviKI_1	RGCY	8 cut(s)	199, 224, 432, 445, 628, 783, 809, 922
CviQI	GTAC	2 cut(s)	307, 647
DdeI	CTNAG	5 cut(s)	120, 330, 465, 635, 754
DpnI	GATC	3 cut(s)	211, 259, 749
DpnII	GATC	3 cut(s)	209, 257, 747
DraI	TTTAAA	1 cut(s)	498
EaeI	YGGCCR	1 cut(s)	626
EagI	CGGCCG	1 cut(s)	626
EclXI	CGGCCG	1 cut(s)	626
Eco32I	GATATC	1 cut(s)	105
Eco47III	AGCGCT	1 cut(s)	774
Eco52I	CGGCCG	1 cut(s)	626
Eco57I	CTGAAG	1 cut(s)	466
EcoRII	CCWGG	1 cut(s)	885
EcoRV	GATATC	1 cut(s)	105
FaeI	CATG	7 cut(s)	237, 307, 437, 589, 709, 830, 869
FalI	AAGNNNNNCTT	4 cut(s)	555, 587, 594, 626
FatI	CATG	7 cut(s)	233, 303, 433, 585, 705, 826, 865
FauNDI	CATATG	1 cut(s)	676
FbaI	TGATCA	1 cut(s)	747
FblI	GTMKAC	1 cut(s)	710
Fnu4HI	GCNGC	1 cut(s)	247
FokI	GGATG	1 cut(s)	860
Fsp4HI	GCNGC	1 cut(s)	247
FspBI	CTAG	1 cut(s)	489
GlaI	GCGC	1 cut(s)	774
GluI	GCNGC	1 cut(s)	247
GsuI	CTGGAG	1 cut(s)	869
HaeII	RGCGCY	1 cut(s)	776
HaeIII	GGCC	3 cut(s)	432, 445, 628
HapII	CCGG	1 cut(s)	625
HhaI	GCGC	1 cut(s)	775
Hin1II	CATG	7 cut(s)	237, 307, 437, 589, 709, 830, 869
Hin6I	GCGC	1 cut(s)	773
HinP1I	GCGC	1 cut(s)	773
HincII	GTYRAC	3 cut(s)	160, 931, 952
HindII	GTYRAC	3 cut(s)	160, 931, 952
HindIII	AAGCTT	1 cut(s)	197
HinfI	GANTC	3 cut(s)	54, 146, 631
HpaII	CCGG	1 cut(s)	625
HphI	GGTGA	2 cut(s)	178, 743
Hpy166II	GTNNAC	5 cut(s)	160, 711, 766, 931, 952
Hpy188I	TCNGA	7 cut(s)	68, 466, 757, 805, 823, 859, 963
Hpy188III	TCNNGA	4 cut(s)	74, 143, 261, 560
Hpy8I	GTNNAC	5 cut(s)	160, 711, 766, 931, 952
HpyAV	CCTTC	2 cut(s)	16, 909
HpyCH4III	ACNGT	1 cut(s)	794
HpyCH4IV	ACGT	2 cut(s)	321, 379
HpyCH4V	TGCA	4 cut(s)	206, 398, 412, 816
HpyF10VI	GCNNNNNNNGC	2 cut(s)	395, 536
HpyF3I	CTNAG	5 cut(s)	120, 330, 465, 635, 754
HpySE526I	ACGT	2 cut(s)	321, 379
Hsp92II	CATG	7 cut(s)	237, 307, 437, 589, 709, 830, 869
HspAI	GCGC	1 cut(s)	773
Ksp22I	TGATCA	1 cut(s)	747
Kzo9I	GATC	3 cut(s)	209, 257, 747
LmnI	GCTCC	2 cut(s)	46, 919
Lsp1109I	GCAGC	1 cut(s)	233
LweI	GCATC	1 cut(s)	193
MaeI	CTAG	1 cut(s)	489
MaeII	ACGT	2 cut(s)	321, 379
MalI	GATC	3 cut(s)	211, 259, 749
MboI	GATC	3 cut(s)	209, 257, 747
MboII	GAAGA	2 cut(s)	575, 770
MfeI	CAATTG	1 cut(s)	399
MflI	RGATCY	1 cut(s)	257
MmeI	TCCRAC	1 cut(s)	882
MnlI	CCTC	5 cut(s)	62, 293, 716, 799, 838
MroXI	GAANNNNTTC	1 cut(s)	567
MseI	TTAA	7 cut(s)	219, 341, 497, 506, 533, 573, 969
MspCI	CTTAAG	1 cut(s)	572
MspI	CCGG	1 cut(s)	625
MspR9I	CCNGG	1 cut(s)	887
MunI	CAATTG	1 cut(s)	399
MvaI	CCWGG	1 cut(s)	887
MwoI	GCNNNNNNNGC	2 cut(s)	395, 536
NdeI	CATATG	1 cut(s)	676
NdeII	GATC	3 cut(s)	209, 257, 747
NheI	GCTAGC	1 cut(s)	488
NlaIII	CATG	7 cut(s)	237, 307, 437, 589, 709, 830, 869
NlaIV	GGNNCC	1 cut(s)	431
NspI	RCATGY	2 cut(s)	307, 709
PciI	ACATGT	1 cut(s)	705
PdmI	GAANNNNTTC	1 cut(s)	567
PfeI	GAWTC	3 cut(s)	54, 146, 631
PflMI	CCANNNNNTGG	1 cut(s)	367
PfoI	TCCNGGA	1 cut(s)	885
PkrI	GCNGC	1 cut(s)	248
Ppu21I	YACGTR	1 cut(s)	380
PscI	ACATGT	1 cut(s)	705
Psp6I	CCWGG	1 cut(s)	885
PspGI	CCWGG	1 cut(s)	885
PspN4I	GGNNCC	1 cut(s)	431
PspPI	GGNCC	1 cut(s)	430
PstNI	CAGNNNCTG	1 cut(s)	809
PsuI	RGATCY	1 cut(s)	257
RsaI	GTAC	2 cut(s)	308, 648
RsaNI	GTAC	2 cut(s)	307, 647
SaqAI	TTAA	7 cut(s)	219, 341, 497, 506, 533, 573, 969
SatI	GCNGC	1 cut(s)	247
Sau3AI	GATC	3 cut(s)	209, 257, 747
Sau96I	GGNCC	1 cut(s)	430
ScrFI	CCNGG	1 cut(s)	887
SfaNI	GCATC	1 cut(s)	193
SfcI	CTRYAG	1 cut(s)	451
SmlI	CTYRAG	1 cut(s)	572
SmoI	CTYRAG	1 cut(s)	572
SsiI	CCGC	3 cut(s)	80, 124, 543
SspI	AATATT	1 cut(s)	339
SspMI	CTAG	1 cut(s)	489
StyD4I	CCNGG	1 cut(s)	885
TaaI	ACNGT	1 cut(s)	794
TaiI	ACGT	2 cut(s)	324, 382
TaqI	TCGA	4 cut(s)	31, 52, 513, 843
TatI	WGTACW	1 cut(s)	306
TfiI	GAWTC	3 cut(s)	54, 146, 631
Tru1I	TTAA	7 cut(s)	219, 341, 497, 506, 533, 573, 969
Tru9I	TTAA	7 cut(s)	219, 341, 497, 506, 533, 573, 969
TscAI	CASTG	3 cut(s)	219, 490, 528
TseI	GCWGC	1 cut(s)	246
TspDTI	ATGAA	3 cut(s)	420, 606, 885
TspRI	CASTG	3 cut(s)	219, 490, 528
Van91I	CCANNNNNTGG	1 cut(s)	367
Vha464I	CTTAAG	1 cut(s)	572
XapI	RAATTY	2 cut(s)	500, 509
XceI	RCATGY	2 cut(s)	307, 709
XmiI	GTMKAC	1 cut(s)	710
XmnI	GAANNNNTTC	1 cut(s)	567
XspI	CTAG	1 cut(s)	489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.