Rmu_sc0003033.1_g000018

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003033.1
OG0018022
Physical Location & Seq
Forward (+)
79411 .. 80847
1437 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003033.1_g000018.1.cds

Sequence Viewer

Length: 1437 bp
atggagaggaagactatctcccgtagagtcaactcatcaccactgagcttctcctcctccgccgcggaaacagtcgccgacatcgaagaacttctaacagaaatccttctctgtgtgccagctcgatcagttgttcgtctcaaatgcatctccaagcattggttctctctaatctcaaaccccgagttccgtcaccgccacaccctccgaaacccgaaccccaaagtctctgctttcttctcccacacaacccaagatttcaccttcatttctctccataaaaacccatctgggtctttcccacctcgtcatttcgtccaggaccttcaccctggtaaccatgaacgctctatcaaccccttcaaaagtctcaacatctttaatagtttcgttcaaggcgatcggaatgggtttgggctgaagattcttcagtcctgcaatggcctctttctgtgcattccattttctacacacaaaagaagacattatcattccatctattttggcaatcccacatcacaatatcattctatctatgttgtcaatcccacctccaaccaattcttggctctttcgcctccgagggctgggaagagcacagaattcgtgcgatatgctctggcttttgacccttccaagtcgcctcattacaaggtggtctgccttagtactacccgcaagcacaattgggtgcaccaggtggatgtttattcgtctgagactcgatcttggaggcttctcgagacgccttacgcctccagggaccttgatatgcacttggatggcaggagcagggaaggaggtgtgtactgcaacggcgcgattcattggataagagacgaaacagagctgcccattcgtgttggtgaggatggaaacagtttggtaagagagaacgctgatttggtacattactatgacattgctgaagaacgtttgggacttgccattcctagtgcccctctggttgtaactggaaactatcctcctaagtttccgaaatttgatcatagatattttggggagtctggtgatcatttgtatttgattgatgtatataaggactcttcgtcaaaaaataatatatataaggattgtaatgctgactttgatgtcatggagatggggaagggctactctggctggtttgtcaagtatcatgttgatcttaatcccgtagttgctgcattccgtggcaattatgatcacttttctcgtttttatgtcttgtttcttggtggagagagaaaagaagaacaagatcaacagcaacaggaggaggtttcttcatctcttttgttccatgttcctggtaaggtcatatcttatcatcttagacataagacctttaagacatatgtggacttggctattaaggactattttctagttgggggatataattatccttacatggagactttagcttctgtgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

478

Amino Acids

54.98

Weight (kDa)

8.48

Isoelectric Point (pI)

51.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018022)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g06960 FvH4_4g06960
rosa_chinensis RchiOBHm_Chr4g0399001
rosa_laevigata RLG00000009302
rosa_multiflora Rmu_sc0003033.1_g000018
rosa_roxburghii Rroxscaffold_5G00344060
rosa_rugosa Rorug04G0013600
rosa_samantha Rh4AG091400 Rh4BG089100 Rh4DG084200
rosa_wichuraiana Rw4G007570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1112
AccB7I CCANNNNNTGG 2 cut(s) 159, 565
AccII CGCG 2 cut(s) 65, 821
AciI CCGC 5 cut(s) 60, 63, 65, 196, 676
AclI AACGTT 1 cut(s) 934
AcsI RAATTY 2 cut(s) 602, 1001
AcuI CTGAAG 3 cut(s) 413, 440, 948
AcyI GRCGYC 1 cut(s) 746
AdeI CACNNNGTG 1 cut(s) 700
AfaI GTAC 3 cut(s) 670, 809, 909
AfiI CCNNNNNNNGG 3 cut(s) 159, 565, 587
AgsI TTSAA 2 cut(s) 364, 395
AhdI GACNNNNNGTC 1 cut(s) 1069
AjnI CCWGG 5 cut(s) 318, 331, 696, 758, 1309
AjuI GAANNNNNNNTTGG 4 cut(s) 146, 178, 887, 919
AluBI AGCT 4 cut(s) 48, 122, 850, 1427
AluI AGCT 4 cut(s) 48, 122, 850, 1427
Alw21I GWGCWC 2 cut(s) 599, 696
Alw26I GTCTC 7 cut(s) 143, 232, 374, 713, 737, 831, 1412
Alw44I GTGCAC 1 cut(s) 692
Ama87I CYCGRG 2 cut(s) 182, 740
AoxI GGCC 1 cut(s) 442
ApaLI GTGCAC 1 cut(s) 692
ApeKI GCWGC 2 cut(s) 850, 1184
ApoI RAATTY 2 cut(s) 602, 1001
Asp700I GAANNNNTTC 2 cut(s) 90, 105
AspLEI GCGC 1 cut(s) 821
AspS9I GGNCC 2 cut(s) 322, 763
AsuHPI GGTGA 6 cut(s) 30, 185, 253, 320, 878, 1043
AvaI CYCGRG 2 cut(s) 182, 740
AvaII GGWCC 2 cut(s) 322, 763
BaeGI GKGCMC 2 cut(s) 696, 961
BbsI GAAGAC 2 cut(s) 17, 487
Bbv12I GWGCWC 2 cut(s) 599, 696
BbvI GCAGC 2 cut(s) 837, 1171
BccI CCATC 5 cut(s) 295, 503, 776, 866, 1117
BceAI ACGGC 1 cut(s) 832
BcgI CGANNNNNNTGC 2 cut(s) 586, 620
BciT130I CCWGG 5 cut(s) 320, 333, 698, 760, 1311
BclI TGATCA 3 cut(s) 1006, 1033, 1204
BcoDI GTCTC 7 cut(s) 143, 232, 374, 713, 737, 831, 1412
BfaI CTAG 2 cut(s) 954, 1388
BisI GCNGC 3 cut(s) 63, 851, 1185
BlsI GCNGC 3 cut(s) 64, 852, 1186
BmcAI AGTACT 1 cut(s) 670
Bme1390I CCNGG 5 cut(s) 320, 333, 698, 760, 1311
Bme18I GGWCC 2 cut(s) 322, 763
BmeRI GACNNNNNGTC 1 cut(s) 1069
BmeT110I CYCGRG 2 cut(s) 182, 740
BmgT120I GGNCC 2 cut(s) 322, 763
BmiI GGNNCC 1 cut(s) 764
BmrFI CCNGG 5 cut(s) 320, 333, 698, 760, 1311
BmsI GCATC 1 cut(s) 156
BpiI GAAGAC 2 cut(s) 17, 487
BpmI CTGGAG 1 cut(s) 742
BsaBI GATNNNNATC 1 cut(s) 1170
BsaHI GRCGYC 1 cut(s) 746
BsaJI CCNNGG 5 cut(s) 63, 331, 581, 759, 1192
Bsc4I CCNNNNNNNGG 3 cut(s) 159, 565, 587
Bse1I ACTGG 1 cut(s) 979
Bse3DI GCAATG 2 cut(s) 445, 921
Bse8I GATNNNNATC 1 cut(s) 1170
BseBI CCWGG 5 cut(s) 320, 333, 698, 760, 1311
BseDI CCNNGG 5 cut(s) 63, 331, 581, 759, 1192
BseGI GGATG 3 cut(s) 709, 787, 877
BseJI GATNNNNATC 1 cut(s) 1170
BseLI CCNNNNNNNGG 3 cut(s) 159, 565, 587
BseMI GCAATG 2 cut(s) 445, 921
BseMII CTCAG 2 cut(s) 35, 708
BseNI ACTGG 1 cut(s) 979
BseRI GAGGAG 3 cut(s) 43, 46, 1292
BseSI GKGCMC 2 cut(s) 696, 961
BseXI GCAGC 2 cut(s) 837, 1171
BseYI CCCAGC 1 cut(s) 587
Bsh1236I CGCG 2 cut(s) 65, 821
Bsh1285I CGRYCG 1 cut(s) 403
BshFI GGCC 1 cut(s) 444
BsiEI CGRYCG 1 cut(s) 403
BsiHKAI GWGCWC 2 cut(s) 599, 696
BsiHKCI CYCGRG 2 cut(s) 182, 740
BslFI GGGAC 2 cut(s) 776, 954
BslI CCNNNNNNNGG 3 cut(s) 159, 565, 587
BsmAI GTCTC 7 cut(s) 143, 232, 374, 713, 737, 831, 1412
BsmBI CGTCTC 3 cut(s) 143, 737, 831
BsmFI GGGAC 2 cut(s) 776, 954
BsmI GAATGC 2 cut(s) 456, 1187
BsnI GGCC 1 cut(s) 444
BsoBI CYCGRG 2 cut(s) 182, 740
Bsp1286I GDGCHC 3 cut(s) 599, 696, 961
Bsp143I GATC 8 cut(s) 125, 400, 725, 1006, 1033, 1165, 1204, 1261
BspACI CCGC 5 cut(s) 60, 63, 65, 196, 676
BspANI GGCC 1 cut(s) 444
BspCNI CTCAG 2 cut(s) 36, 709
BspFNI CGCG 2 cut(s) 65, 821
BspLI GGNNCC 1 cut(s) 764
BspQI GCTCTTC 1 cut(s) 587
BsrDI GCAATG 2 cut(s) 445, 921
BsrI ACTGG 1 cut(s) 979
BssECI CCNNGG 5 cut(s) 63, 331, 581, 759, 1192
BssMI GATC 8 cut(s) 125, 400, 725, 1006, 1033, 1165, 1204, 1261
BssNI GRCGYC 1 cut(s) 746
Bst2UI CCWGG 5 cut(s) 320, 333, 698, 760, 1311
Bst4CI ACNGT 2 cut(s) 73, 881
Bst6I CTCTTC 2 cut(s) 587, 1072
BstACI GRCGYC 1 cut(s) 746
BstC8I GCNNGC 2 cut(s) 120, 680
BstDEI CTNAG 5 cut(s) 44, 665, 717, 990, 1334
BstDSI CCRYGG 2 cut(s) 63, 1192
BstEII GGTNACC 1 cut(s) 335
BstF5I GGATG 3 cut(s) 709, 787, 877
BstFNI CGCG 2 cut(s) 65, 821
BstHHI GCGC 1 cut(s) 821
BstKTI GATC 8 cut(s) 128, 403, 728, 1009, 1036, 1168, 1207, 1264
BstMAI GTCTC 7 cut(s) 143, 232, 374, 713, 737, 831, 1412
BstMBI GATC 8 cut(s) 125, 400, 725, 1006, 1033, 1165, 1204, 1261
BstMCI CGRYCG 1 cut(s) 403
BstMWI GCNNNNNNNGC 1 cut(s) 1140
BstNI CCWGG 5 cut(s) 320, 333, 698, 760, 1311
BstPI GGTNACC 1 cut(s) 335
BstSCI CCNGG 5 cut(s) 318, 331, 696, 758, 1309
BstSLI GKGCMC 2 cut(s) 696, 961
BstUI CGCG 2 cut(s) 65, 821
BstV1I GCAGC 2 cut(s) 837, 1171
BstV2I GAAGAC 2 cut(s) 17, 487
BstXI CCANNNNNNTGG 1 cut(s) 1310
BsuRI GGCC 1 cut(s) 444
BtgI CCRYGG 2 cut(s) 63, 1192
BtsCI GGATG 3 cut(s) 709, 787, 877
BtsIMutI CAGTG 1 cut(s) 41
Cac8I GCNNGC 2 cut(s) 120, 680
CfoI GCGC 1 cut(s) 821
Cfr13I GGNCC 2 cut(s) 322, 763
Cfr42I CCGCGG 1 cut(s) 66
CseI GACGC 1 cut(s) 754
CsiI ACCWGGT 1 cut(s) 696
Csp6I GTAC 3 cut(s) 669, 808, 908
CviAII CATG 5 cut(s) 341, 1117, 1160, 1304, 1414
CviQI GTAC 3 cut(s) 669, 808, 908
DdeI CTNAG 5 cut(s) 44, 665, 717, 990, 1334
DpnI GATC 8 cut(s) 127, 402, 727, 1008, 1035, 1167, 1206, 1263
DpnII GATC 8 cut(s) 125, 400, 725, 1006, 1033, 1165, 1204, 1261
DraIII CACNNNGTG 1 cut(s) 700
DrdI GACNNNNNNGTC 1 cut(s) 1112
DriI GACNNNNNGTC 1 cut(s) 1069
DseDI GACNNNNNNGTC 1 cut(s) 1112
Eam1104I CTCTTC 2 cut(s) 587, 1072
Eam1105I GACNNNNNGTC 1 cut(s) 1069
EarI CTCTTC 2 cut(s) 587, 1072
EciI GGCGGA 1 cut(s) 49
Eco47I GGWCC 2 cut(s) 322, 763
Eco57I CTGAAG 3 cut(s) 413, 440, 948
Eco88I CYCGRG 2 cut(s) 182, 740
Eco91I GGTNACC 1 cut(s) 335
EcoO109I RGGNCCY 2 cut(s) 322, 763
EcoO65I GGTNACC 1 cut(s) 335
EcoRI GAATTC 1 cut(s) 602
EcoRII CCWGG 5 cut(s) 318, 331, 696, 758, 1309
EcoT22I ATGCAT 1 cut(s) 149
Esp3I CGTCTC 3 cut(s) 143, 737, 831
FaeI CATG 5 cut(s) 344, 1120, 1163, 1307, 1417
FaqI GGGAC 2 cut(s) 776, 954
FatI CATG 5 cut(s) 340, 1116, 1159, 1303, 1413
FauI CCCGC 1 cut(s) 683
FauNDI CATATG 1 cut(s) 1357
FbaI TGATCA 3 cut(s) 1006, 1033, 1204
Fnu4HI GCNGC 3 cut(s) 63, 851, 1185
FokI GGATG 3 cut(s) 716, 794, 884
Fsp4HI GCNGC 3 cut(s) 63, 851, 1185
FspBI CTAG 2 cut(s) 954, 1388
GlaI GCGC 1 cut(s) 820
GluI GCNGC 3 cut(s) 63, 851, 1185
GsaI CCCAGC 1 cut(s) 591
GsuI CTGGAG 1 cut(s) 742
HaeIII GGCC 1 cut(s) 444
HgaI GACGC 1 cut(s) 754
HhaI GCGC 1 cut(s) 821
Hin1I GRCGYC 1 cut(s) 746
Hin1II CATG 5 cut(s) 344, 1120, 1163, 1307, 1417
Hin6I GCGC 1 cut(s) 819
HinP1I GCGC 1 cut(s) 819
HincII GTYRAC 1 cut(s) 31
HindII GTYRAC 1 cut(s) 31
HinfI GANTC 6 cut(s) 27, 424, 721, 823, 1025, 1064
HphI GGTGA 6 cut(s) 30, 185, 253, 320, 878, 1043
Hpy166II GTNNAC 4 cut(s) 31, 694, 808, 1363
Hpy188I TCNGA 5 cut(s) 209, 405, 582, 718, 999
Hpy188III TCNNGA 2 cut(s) 740, 742
Hpy8I GTNNAC 4 cut(s) 31, 694, 808, 1363
HpyAV CCTTC 7 cut(s) 116, 274, 335, 370, 642, 791, 1123
HpyCH4III ACNGT 2 cut(s) 73, 881
HpyCH4IV ACGT 1 cut(s) 934
HpyCH4V TGCA 7 cut(s) 147, 438, 456, 694, 775, 813, 1187
HpyF10VI GCNNNNNNNGC 1 cut(s) 1140
HpyF3I CTNAG 5 cut(s) 44, 665, 717, 990, 1334
HpySE526I ACGT 1 cut(s) 934
Hsp92I GRCGYC 1 cut(s) 746
Hsp92II CATG 5 cut(s) 344, 1120, 1163, 1307, 1417
HspAI GCGC 1 cut(s) 819
Ksp22I TGATCA 3 cut(s) 1006, 1033, 1204
KspI CCGCGG 1 cut(s) 66
Kzo9I GATC 8 cut(s) 125, 400, 725, 1006, 1033, 1165, 1204, 1261
LguI GCTCTTC 1 cut(s) 587
LmnI GCTCC 1 cut(s) 789
Lsp1109I GCAGC 2 cut(s) 837, 1171
LweI GCATC 1 cut(s) 156
MabI ACCWGGT 1 cut(s) 696
MaeI CTAG 2 cut(s) 954, 1388
MaeII ACGT 1 cut(s) 934
MaeIII GTNAC 3 cut(s) 191, 335, 970
MalI GATC 8 cut(s) 127, 402, 727, 1008, 1035, 1167, 1206, 1263
MboI GATC 8 cut(s) 125, 400, 725, 1006, 1033, 1165, 1204, 1261
MfeI CAATTG 1 cut(s) 685
MhlI GDGCHC 3 cut(s) 599, 696, 961
MluCI AATT 6 cut(s) 560, 602, 685, 1001, 1198, 1402
MlyI GAGTC 4 cut(s) 36, 715, 1034, 1058
MmeI TCCRAC 1 cut(s) 579
Mph1103I ATGCAT 1 cut(s) 149
MroXI GAANNNNTTC 2 cut(s) 90, 105
MseI TTAA 4 cut(s) 381, 1170, 1350, 1374
MslI CAYNNNNRTG 3 cut(s) 780, 915, 1121
MspA1I CMGCKG 1 cut(s) 65
MspR9I CCNGG 5 cut(s) 320, 333, 698, 760, 1311
MunI CAATTG 1 cut(s) 685
Mva1269I GAATGC 2 cut(s) 456, 1187
MvaI CCWGG 5 cut(s) 320, 333, 698, 760, 1311
MvnI CGCG 2 cut(s) 65, 821
MwoI GCNNNNNNNGC 1 cut(s) 1140
NdeI CATATG 1 cut(s) 1357
NdeII GATC 8 cut(s) 125, 400, 725, 1006, 1033, 1165, 1204, 1261
NlaIII CATG 5 cut(s) 344, 1120, 1163, 1307, 1417
NlaIV GGNNCC 1 cut(s) 764
NmuCI GTSAC 1 cut(s) 191
NsiI ATGCAT 1 cut(s) 149
PaeR7I CTCGAG 1 cut(s) 740
PciSI GCTCTTC 1 cut(s) 587
PcsI WCGNNNNNNNCGW 2 cut(s) 81, 396
PctI GAATGC 2 cut(s) 456, 1187
PdmI GAANNNNTTC 2 cut(s) 90, 105
PfeI GAWTC 2 cut(s) 424, 823
PflMI CCANNNNNTGG 2 cut(s) 159, 565
PfoI TCCNGGA 1 cut(s) 318
PkrI GCNGC 3 cut(s) 64, 852, 1186
Ple19I CGATCG 1 cut(s) 403
PleI GAGTC 4 cut(s) 35, 715, 1033, 1058
PpsI GAGTC 4 cut(s) 35, 715, 1033, 1058
PpuMI RGGWCCY 2 cut(s) 322, 763
Psp1406I AACGTT 1 cut(s) 934
Psp5II RGGWCCY 2 cut(s) 322, 763
Psp6I CCWGG 5 cut(s) 318, 331, 696, 758, 1309
PspEI GGTNACC 1 cut(s) 335
PspFI CCCAGC 1 cut(s) 587
PspGI CCWGG 5 cut(s) 318, 331, 696, 758, 1309
PspN4I GGNNCC 1 cut(s) 764
PspPI GGNCC 2 cut(s) 322, 763
PspPPI RGGWCCY 2 cut(s) 322, 763
PvuI CGATCG 1 cut(s) 403
RsaI GTAC 3 cut(s) 670, 809, 909
RsaNI GTAC 3 cut(s) 669, 808, 908
RseI CAYNNNNRTG 3 cut(s) 780, 915, 1121
SacII CCGCGG 1 cut(s) 66
SapI GCTCTTC 1 cut(s) 587
SaqAI TTAA 4 cut(s) 381, 1170, 1350, 1374
SatI GCNGC 3 cut(s) 63, 851, 1185
Sau3AI GATC 8 cut(s) 125, 400, 725, 1006, 1033, 1165, 1204, 1261
Sau96I GGNCC 2 cut(s) 322, 763
ScaI AGTACT 1 cut(s) 670
SchI GAGTC 4 cut(s) 36, 715, 1034, 1058
ScrFI CCNGG 5 cut(s) 320, 333, 698, 760, 1311
SduI GDGCHC 3 cut(s) 599, 696, 961
SexAI ACCWGGT 1 cut(s) 696
SfaNI GCATC 1 cut(s) 156
Sfr274I CTCGAG 1 cut(s) 740
Sfr303I CCGCGG 1 cut(s) 66
SgrBI CCGCGG 1 cut(s) 66
SinI GGWCC 2 cut(s) 322, 763
SlaI CTCGAG 1 cut(s) 740
SmiMI CAYNNNNRTG 3 cut(s) 780, 915, 1121
SmlI CTYRAG 1 cut(s) 740
SmoI CTYRAG 1 cut(s) 740
Sse9I AATT 6 cut(s) 560, 602, 685, 1001, 1198, 1402
SsiI CCGC 5 cut(s) 60, 63, 65, 196, 676
SspMI CTAG 2 cut(s) 954, 1388
StyD4I CCNGG 5 cut(s) 318, 331, 696, 758, 1309
TaaI ACNGT 2 cut(s) 73, 881
TaiI ACGT 1 cut(s) 937
TaqI TCGA 4 cut(s) 84, 124, 724, 741
TasI AATT 6 cut(s) 560, 602, 685, 1001, 1198, 1402
TatI WGTACW 2 cut(s) 668, 807
TauI GCSGC 1 cut(s) 65
TfiI GAWTC 2 cut(s) 424, 823
Tru1I TTAA 4 cut(s) 381, 1170, 1350, 1374
Tru9I TTAA 4 cut(s) 381, 1170, 1350, 1374
TscAI CASTG 1 cut(s) 48
TseFI GTSAC 1 cut(s) 191
TseI GCWGC 2 cut(s) 850, 1184
Tsp45I GTSAC 1 cut(s) 191
TspDTI ATGAA 4 cut(s) 256, 357, 815, 1278
TspGWI ACGGA 2 cut(s) 179, 1181
TspRI CASTG 1 cut(s) 48
Van91I CCANNNNNTGG 2 cut(s) 159, 565
VneI GTGCAC 1 cut(s) 692
VpaK11BI GGWCC 2 cut(s) 322, 763
XapI RAATTY 2 cut(s) 602, 1001
XcmI CCANNNNNNNNNTGG 1 cut(s) 562
XhoI CTCGAG 1 cut(s) 740
XmnI GAANNNNTTC 2 cut(s) 90, 105
XspI CTAG 2 cut(s) 954, 1388
ZrmI AGTACT 1 cut(s) 670
Zsp2I ATGCAT 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.