Rh4AG091400

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0018022
Physical Location & Seq
Forward (+)
19282268 .. 19295679
13412 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG091400.1

Sequence Viewer

Length: 1200 bp
ATGGAGAGGAAGACTATCTCCCGTAGAGTCAACTCATCACCACTGAGCTTCTCCTCCTCCGCCGCGGAAACCGTCGCCGACATCGAAGAACTTCTAACAGAAATCCTTCTCTGTGTGCCAGCTCGATCAGTTGTTCGTCTCAAATGCATCTCCAAGCATTGGTTCTCTCTAATCTCAAACCCCGAGTTCCGTCACCGCCACACCCTCCGAAACCCGAACCCCAAAGTCTCTGCTTTCTTCTCCCACACAACCCAAGACTTCACCTTCATTTCTCTCCATAAAAACCCATCTGGGTCTTTCCCACCTCGTCATTTCGTCCAGGACCTTCACCCTGGTAACCATGAACGCTCTATCAACCCCTTCAAAAGTCTCAACATCTTTAATAGTTTCGTCCAAGGCGATCGGAATGGGTTTGGGTTGAAGATTCTTCAGTCCTGCAATGGCCTCTTTCTCTGCATTCCATTTTCTACACACAAAAGCAGACATTATCATTCCATCTATTTTGGCAATCCCACATCACAATATCATTCTATCTATGTTGTCAATCCCACCTCCAACCAATTCTTGGCTCTTTCGCCTCCGAGGGCTGGGAAGAGCACAGAATTCGTGCGGTATGCTCTGGCTTTTGACCCTTCCAAATCGCCTCATTACAAGGTGGTCTGCCTTAGTACTACCCGCAAGCACAATTGGGTGCACCAGGTGGATGTTTATTCGTCCGAGACTCGATCTTGGAGGCTTCTCGAGACGCCTTACGCCTCCAGGGACCTTGATATGCACTTGGATGGCAGGAGCAGGGAAGGAGGTGTGTACTGCAACGGCGCGATTCATTGGATAAGAGACGAAACAGAGCTGCCCATTCGTGTTGGTGAGGATGGAAACAGTTTGGTAAGAGAGAACGCTGATTTGGTACATTACTATGGCATTGCTGAAGAACGTCTGGGACTTGCCATTCCTAGTGCCCCTCTGGTTGTAACTGGAAACTATCCTCCTAAGTTTCCGAAATTTGATCATAGATATTTTGGGGAGTCTGGTGATCATTTGTATTTGATTGATGTATATAAGGACTCTTCGTCGAAAAATAATATATATAAGGATTGTAATGCTGAATTTGATGTCATGGAGATGGGGAAGGACTACTCTGGCTGGTTTGTCAAGAACCGCAGTTTGAAGCCATTGCCTCAAAAGTTTTATGTCTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

399

Amino Acids

45.69

Weight (kDa)

9.0

Isoelectric Point (pI)

51.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 29 - 65 9.4e-06 F-box domain
FBA_1 PF07734 143 - 281 1.8e-10 F-box associated beta propeller domain
FBA_3 PF08268 166 - 270 3.1e-09 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018022)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g06960 FvH4_4g06960
rosa_chinensis RchiOBHm_Chr4g0399001
rosa_laevigata RLG00000009302
rosa_multiflora Rmu_sc0003033.1_g000018
rosa_roxburghii Rroxscaffold_5G00344060
rosa_rugosa Rorug04G0013600
rosa_samantha Rh4AG091400 Rh4BG089100 Rh4DG084200
rosa_wichuraiana Rw4G007570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 159, 565
AccII CGCG 2 cut(s) 65, 821
AciI CCGC 7 cut(s) 60, 63, 65, 196, 610, 676, 1159
AcsI RAATTY 3 cut(s) 602, 1001, 1106
AcuI CTGAAG 2 cut(s) 413, 948
AcyI GRCGYC 1 cut(s) 746
AdeI CACNNNGTG 1 cut(s) 700
AfaI GTAC 3 cut(s) 670, 809, 909
AfiI CCNNNNNNNGG 3 cut(s) 159, 565, 587
AgsI TTSAA 3 cut(s) 364, 421, 1168
AhdI GACNNNNNGTC 1 cut(s) 1069
AjnI CCWGG 4 cut(s) 318, 331, 696, 758
AjuI GAANNNNNNNTTGG 4 cut(s) 146, 178, 887, 919
AluBI AGCT 3 cut(s) 48, 122, 850
AluI AGCT 3 cut(s) 48, 122, 850
Alw21I GWGCWC 2 cut(s) 599, 696
Alw26I GTCTC 6 cut(s) 143, 232, 374, 713, 737, 831
Alw44I GTGCAC 1 cut(s) 692
Ama87I CYCGRG 2 cut(s) 182, 740
AoxI GGCC 1 cut(s) 442
ApaLI GTGCAC 1 cut(s) 692
ApeKI GCWGC 1 cut(s) 850
ApoI RAATTY 3 cut(s) 602, 1001, 1106
Asp700I GAANNNNTTC 2 cut(s) 90, 105
AspLEI GCGC 1 cut(s) 821
AspS9I GGNCC 2 cut(s) 322, 763
AsuHPI GGTGA 6 cut(s) 30, 185, 253, 320, 878, 1043
AvaI CYCGRG 2 cut(s) 182, 740
AvaII GGWCC 2 cut(s) 322, 763
BaeGI GKGCMC 2 cut(s) 696, 961
BbsI GAAGAC 1 cut(s) 17
Bbv12I GWGCWC 2 cut(s) 599, 696
BbvI GCAGC 1 cut(s) 837
BccI CCATC 5 cut(s) 295, 503, 776, 866, 1117
BceAI ACGGC 1 cut(s) 832
BcgI CGANNNNNNTGC 2 cut(s) 586, 620
BciT130I CCWGG 4 cut(s) 320, 333, 698, 760
BclI TGATCA 2 cut(s) 1006, 1033
BcoDI GTCTC 6 cut(s) 143, 232, 374, 713, 737, 831
BfaI CTAG 1 cut(s) 954
BisI GCNGC 2 cut(s) 63, 851
BlsI GCNGC 2 cut(s) 64, 852
BmcAI AGTACT 1 cut(s) 670
Bme1390I CCNGG 4 cut(s) 320, 333, 698, 760
Bme18I GGWCC 2 cut(s) 322, 763
BmeRI GACNNNNNGTC 1 cut(s) 1069
BmeT110I CYCGRG 2 cut(s) 182, 740
BmgT120I GGNCC 2 cut(s) 322, 763
BmiI GGNNCC 1 cut(s) 764
BmrFI CCNGG 4 cut(s) 320, 333, 698, 760
BmsI GCATC 1 cut(s) 156
BpiI GAAGAC 1 cut(s) 17
BpmI CTGGAG 1 cut(s) 742
BsaHI GRCGYC 1 cut(s) 746
BsaJI CCNNGG 5 cut(s) 63, 331, 394, 581, 759
Bsc4I CCNNNNNNNGG 3 cut(s) 159, 565, 587
Bse1I ACTGG 1 cut(s) 979
Bse3DI GCAATG 3 cut(s) 445, 921, 1172
BseBI CCWGG 4 cut(s) 320, 333, 698, 760
BseDI CCNNGG 5 cut(s) 63, 331, 394, 581, 759
BseGI GGATG 3 cut(s) 709, 787, 877
BseLI CCNNNNNNNGG 3 cut(s) 159, 565, 587
BseMI GCAATG 3 cut(s) 445, 921, 1172
BseMII CTCAG 1 cut(s) 35
BseNI ACTGG 1 cut(s) 979
BseRI GAGGAG 2 cut(s) 43, 46
BseSI GKGCMC 2 cut(s) 696, 961
BseXI GCAGC 1 cut(s) 837
BseYI CCCAGC 1 cut(s) 587
Bsh1236I CGCG 2 cut(s) 65, 821
Bsh1285I CGRYCG 1 cut(s) 403
BshFI GGCC 1 cut(s) 444
BsiEI CGRYCG 1 cut(s) 403
BsiHKAI GWGCWC 2 cut(s) 599, 696
BsiHKCI CYCGRG 2 cut(s) 182, 740
BslFI GGGAC 2 cut(s) 776, 954
BslI CCNNNNNNNGG 3 cut(s) 159, 565, 587
BsmAI GTCTC 6 cut(s) 143, 232, 374, 713, 737, 831
BsmBI CGTCTC 3 cut(s) 143, 737, 831
BsmFI GGGAC 2 cut(s) 776, 954
BsmI GAATGC 1 cut(s) 456
BsnI GGCC 1 cut(s) 444
BsoBI CYCGRG 2 cut(s) 182, 740
Bsp1286I GDGCHC 3 cut(s) 599, 696, 961
Bsp143I GATC 5 cut(s) 125, 400, 725, 1006, 1033
BspACI CCGC 7 cut(s) 60, 63, 65, 196, 610, 676, 1159
BspANI GGCC 1 cut(s) 444
BspCNI CTCAG 1 cut(s) 36
BspFNI CGCG 2 cut(s) 65, 821
BspLI GGNNCC 1 cut(s) 764
BspQI GCTCTTC 1 cut(s) 587
BsrDI GCAATG 3 cut(s) 445, 921, 1172
BsrI ACTGG 1 cut(s) 979
BssECI CCNNGG 5 cut(s) 63, 331, 394, 581, 759
BssMI GATC 5 cut(s) 125, 400, 725, 1006, 1033
BssNI GRCGYC 1 cut(s) 746
BssT1I CCWWGG 1 cut(s) 394
Bst2UI CCWGG 4 cut(s) 320, 333, 698, 760
Bst4CI ACNGT 2 cut(s) 73, 881
Bst6I CTCTTC 2 cut(s) 587, 1072
BstACI GRCGYC 1 cut(s) 746
BstC8I GCNNGC 2 cut(s) 120, 680
BstDEI CTNAG 3 cut(s) 44, 665, 990
BstDSI CCRYGG 1 cut(s) 63
BstEII GGTNACC 1 cut(s) 335
BstF5I GGATG 3 cut(s) 709, 787, 877
BstFNI CGCG 2 cut(s) 65, 821
BstHHI GCGC 1 cut(s) 821
BstKTI GATC 5 cut(s) 128, 403, 728, 1009, 1036
BstMAI GTCTC 6 cut(s) 143, 232, 374, 713, 737, 831
BstMBI GATC 5 cut(s) 125, 400, 725, 1006, 1033
BstMCI CGRYCG 1 cut(s) 403
BstNI CCWGG 4 cut(s) 320, 333, 698, 760
BstPI GGTNACC 1 cut(s) 335
BstSCI CCNGG 4 cut(s) 318, 331, 696, 758
BstSLI GKGCMC 2 cut(s) 696, 961
BstUI CGCG 2 cut(s) 65, 821
BstV1I GCAGC 1 cut(s) 837
BstV2I GAAGAC 1 cut(s) 17
BsuRI GGCC 1 cut(s) 444
BtgI CCRYGG 1 cut(s) 63
BtsCI GGATG 3 cut(s) 709, 787, 877
BtsIMutI CAGTG 1 cut(s) 41
Cac8I GCNNGC 2 cut(s) 120, 680
CfoI GCGC 1 cut(s) 821
Cfr13I GGNCC 2 cut(s) 322, 763
Cfr42I CCGCGG 1 cut(s) 66
CseI GACGC 1 cut(s) 754
CsiI ACCWGGT 1 cut(s) 696
Csp6I GTAC 3 cut(s) 669, 808, 908
CviAII CATG 2 cut(s) 341, 1117
CviQI GTAC 3 cut(s) 669, 808, 908
DdeI CTNAG 3 cut(s) 44, 665, 990
DpnI GATC 5 cut(s) 127, 402, 727, 1008, 1035
DpnII GATC 5 cut(s) 125, 400, 725, 1006, 1033
DraIII CACNNNGTG 1 cut(s) 700
DriI GACNNNNNGTC 1 cut(s) 1069
Eam1104I CTCTTC 2 cut(s) 587, 1072
Eam1105I GACNNNNNGTC 1 cut(s) 1069
EarI CTCTTC 2 cut(s) 587, 1072
EciI GGCGGA 1 cut(s) 49
Eco130I CCWWGG 1 cut(s) 394
Eco47I GGWCC 2 cut(s) 322, 763
Eco57I CTGAAG 2 cut(s) 413, 948
Eco88I CYCGRG 2 cut(s) 182, 740
Eco91I GGTNACC 1 cut(s) 335
EcoO109I RGGNCCY 2 cut(s) 322, 763
EcoO65I GGTNACC 1 cut(s) 335
EcoRI GAATTC 1 cut(s) 602
EcoRII CCWGG 4 cut(s) 318, 331, 696, 758
EcoT14I CCWWGG 1 cut(s) 394
EcoT22I ATGCAT 1 cut(s) 149
ErhI CCWWGG 1 cut(s) 394
Esp3I CGTCTC 3 cut(s) 143, 737, 831
FaeI CATG 2 cut(s) 344, 1120
FaqI GGGAC 2 cut(s) 776, 954
FatI CATG 2 cut(s) 340, 1116
FauI CCCGC 1 cut(s) 683
FbaI TGATCA 2 cut(s) 1006, 1033
Fnu4HI GCNGC 2 cut(s) 63, 851
FokI GGATG 3 cut(s) 716, 794, 884
Fsp4HI GCNGC 2 cut(s) 63, 851
FspBI CTAG 1 cut(s) 954
GlaI GCGC 1 cut(s) 820
GluI GCNGC 2 cut(s) 63, 851
GsaI CCCAGC 1 cut(s) 591
GsuI CTGGAG 1 cut(s) 742
HaeIII GGCC 1 cut(s) 444
HgaI GACGC 1 cut(s) 754
HhaI GCGC 1 cut(s) 821
Hin1I GRCGYC 1 cut(s) 746
Hin1II CATG 2 cut(s) 344, 1120
Hin6I GCGC 1 cut(s) 819
HinP1I GCGC 1 cut(s) 819
HincII GTYRAC 1 cut(s) 31
HindII GTYRAC 1 cut(s) 31
HinfI GANTC 6 cut(s) 27, 424, 721, 823, 1025, 1064
HphI GGTGA 6 cut(s) 30, 185, 253, 320, 878, 1043
Hpy166II GTNNAC 3 cut(s) 31, 694, 808
Hpy188I TCNGA 5 cut(s) 209, 405, 582, 718, 999
Hpy188III TCNNGA 3 cut(s) 740, 742, 1153
Hpy8I GTNNAC 3 cut(s) 31, 694, 808
Hpy99I CGWCG 2 cut(s) 77, 1075
HpyAV CCTTC 7 cut(s) 116, 274, 335, 370, 642, 791, 1123
HpyCH4III ACNGT 2 cut(s) 73, 881
HpyCH4IV ACGT 1 cut(s) 934
HpyCH4V TGCA 6 cut(s) 147, 438, 456, 694, 775, 813
HpyF3I CTNAG 3 cut(s) 44, 665, 990
HpySE526I ACGT 1 cut(s) 934
Hsp92I GRCGYC 1 cut(s) 746
Hsp92II CATG 2 cut(s) 344, 1120
HspAI GCGC 1 cut(s) 819
Ksp22I TGATCA 2 cut(s) 1006, 1033
KspI CCGCGG 1 cut(s) 66
Kzo9I GATC 5 cut(s) 125, 400, 725, 1006, 1033
LguI GCTCTTC 1 cut(s) 587
LmnI GCTCC 1 cut(s) 789
Lsp1109I GCAGC 1 cut(s) 837
LweI GCATC 1 cut(s) 156
MabI ACCWGGT 1 cut(s) 696
MaeI CTAG 1 cut(s) 954
MaeII ACGT 1 cut(s) 934
MaeIII GTNAC 3 cut(s) 191, 335, 970
MalI GATC 5 cut(s) 127, 402, 727, 1008, 1035
MboI GATC 5 cut(s) 125, 400, 725, 1006, 1033
MboII GAAGA 8 cut(s) 22, 98, 229, 419, 433, 604, 941, 1059
MfeI CAATTG 1 cut(s) 685
MhlI GDGCHC 3 cut(s) 599, 696, 961
MluCI AATT 5 cut(s) 560, 602, 685, 1001, 1106
MlyI GAGTC 4 cut(s) 36, 715, 1034, 1058
MmeI TCCRAC 1 cut(s) 579
Mph1103I ATGCAT 1 cut(s) 149
MroXI GAANNNNTTC 2 cut(s) 90, 105
MseI TTAA 1 cut(s) 381
MslI CAYNNNNRTG 3 cut(s) 780, 915, 1121
MspA1I CMGCKG 1 cut(s) 65
MspR9I CCNGG 4 cut(s) 320, 333, 698, 760
MunI CAATTG 1 cut(s) 685
Mva1269I GAATGC 1 cut(s) 456
MvaI CCWGG 4 cut(s) 320, 333, 698, 760
MvnI CGCG 2 cut(s) 65, 821
NdeII GATC 5 cut(s) 125, 400, 725, 1006, 1033
NlaIII CATG 2 cut(s) 344, 1120
NlaIV GGNNCC 1 cut(s) 764
NmuCI GTSAC 1 cut(s) 191
NsiI ATGCAT 1 cut(s) 149
PaeR7I CTCGAG 1 cut(s) 740
PciSI GCTCTTC 1 cut(s) 587
PcsI WCGNNNNNNNCGW 2 cut(s) 81, 396
PctI GAATGC 1 cut(s) 456
PdmI GAANNNNTTC 2 cut(s) 90, 105
PfeI GAWTC 2 cut(s) 424, 823
PflMI CCANNNNNTGG 2 cut(s) 159, 565
PfoI TCCNGGA 1 cut(s) 318
PkrI GCNGC 2 cut(s) 64, 852
Ple19I CGATCG 1 cut(s) 403
PleI GAGTC 4 cut(s) 35, 715, 1033, 1058
PpsI GAGTC 4 cut(s) 35, 715, 1033, 1058
PpuMI RGGWCCY 2 cut(s) 322, 763
Psp5II RGGWCCY 2 cut(s) 322, 763
Psp6I CCWGG 4 cut(s) 318, 331, 696, 758
PspEI GGTNACC 1 cut(s) 335
PspFI CCCAGC 1 cut(s) 587
PspGI CCWGG 4 cut(s) 318, 331, 696, 758
PspN4I GGNNCC 1 cut(s) 764
PspPI GGNCC 2 cut(s) 322, 763
PspPPI RGGWCCY 2 cut(s) 322, 763
PvuI CGATCG 1 cut(s) 403
RsaI GTAC 3 cut(s) 670, 809, 909
RsaNI GTAC 3 cut(s) 669, 808, 908
RseI CAYNNNNRTG 3 cut(s) 780, 915, 1121
SacII CCGCGG 1 cut(s) 66
SapI GCTCTTC 1 cut(s) 587
SaqAI TTAA 1 cut(s) 381
SatI GCNGC 2 cut(s) 63, 851
Sau3AI GATC 5 cut(s) 125, 400, 725, 1006, 1033
Sau96I GGNCC 2 cut(s) 322, 763
ScaI AGTACT 1 cut(s) 670
SchI GAGTC 4 cut(s) 36, 715, 1034, 1058
ScrFI CCNGG 4 cut(s) 320, 333, 698, 760
SduI GDGCHC 3 cut(s) 599, 696, 961
SexAI ACCWGGT 1 cut(s) 696
SfaNI GCATC 1 cut(s) 156
Sfr274I CTCGAG 1 cut(s) 740
Sfr303I CCGCGG 1 cut(s) 66
SgrBI CCGCGG 1 cut(s) 66
SinI GGWCC 2 cut(s) 322, 763
SlaI CTCGAG 1 cut(s) 740
SmiMI CAYNNNNRTG 3 cut(s) 780, 915, 1121
SmlI CTYRAG 1 cut(s) 740
SmoI CTYRAG 1 cut(s) 740
Sse9I AATT 5 cut(s) 560, 602, 685, 1001, 1106
SsiI CCGC 7 cut(s) 60, 63, 65, 196, 610, 676, 1159
SspMI CTAG 1 cut(s) 954
StyD4I CCNGG 4 cut(s) 318, 331, 696, 758
StyI CCWWGG 1 cut(s) 394
TaaI ACNGT 2 cut(s) 73, 881
TaiI ACGT 1 cut(s) 937
TaqI TCGA 5 cut(s) 84, 124, 724, 741, 1073
TasI AATT 5 cut(s) 560, 602, 685, 1001, 1106
TatI WGTACW 2 cut(s) 668, 807
TauI GCSGC 1 cut(s) 65
TfiI GAWTC 2 cut(s) 424, 823
Tru1I TTAA 1 cut(s) 381
Tru9I TTAA 1 cut(s) 381
TscAI CASTG 1 cut(s) 48
TseFI GTSAC 1 cut(s) 191
TseI GCWGC 1 cut(s) 850
Tsp45I GTSAC 1 cut(s) 191
TspDTI ATGAA 3 cut(s) 256, 357, 815
TspGWI ACGGA 1 cut(s) 179
TspRI CASTG 1 cut(s) 48
Van91I CCANNNNNTGG 2 cut(s) 159, 565
VneI GTGCAC 1 cut(s) 692
VpaK11BI GGWCC 2 cut(s) 322, 763
XapI RAATTY 3 cut(s) 602, 1001, 1106
XcmI CCANNNNNNNNNTGG 1 cut(s) 562
XhoI CTCGAG 1 cut(s) 740
XmnI GAANNNNTTC 2 cut(s) 90, 105
XspI CTAG 1 cut(s) 954
ZrmI AGTACT 1 cut(s) 670
Zsp2I ATGCAT 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.