Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003071.1

Orthogroup ID

OG0018589

Physical Location & Seq

Genomic Coordinates Reverse (-)

18541 .. 20496

Gene Structure 1956 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003071.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

atggaagagtacgtcagagaagctccccgtgtctcaatagttcgcaaggaggagagacttgctgatgaggttaggaagctacagaatgctggggctaatatgcctcctgacctcagggtaagtgcatttccttctgggacaactgggaaggcggttgggaatggcggctatggtagaagtgggcggttgattgctgcaagtggagggcttgtggagaagagtggcatgttttcaaagccactttctaagaagtcaggggaggttgggatcacaattgatcacttgcataggctcaatccaaagaatgtgtctgcttggaatatgaagaggctaatgaatatagtaaaatataggcatcttaccacactagatgagcagattctggattcaaccaaggatgagggtgagggtgatactaagatcaaaagtgaagttgaggcaaaggttgccgcgaaaaagatatttcgcaatgtggctaggcctggctccaagtatgtttccttttattcccttttggtcaattgctttagagaacggagagcacttgctttgactctaactgacagcaaaacagcggtgaacagacttcgacgcgtggtggacgtattagttagcattattattataattatatggctgcttgtgctggataagaaggagcactggtatcctgcaccaatgttcatattaaaggaagtggaagaattaaataggatgaggttttccatatggctgtcacatagaatgaacttccaagacatgggagaaaagtgggcaaggagagcccgtttacttgaagagatagtacggatcctccaggagcttgacattgagtatcgcttgcggcccattgacataaatgtccgtggcatgcctcccacggccaccactcttcctccgtctaatttcacagcaaccacaagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008381 GO:0009506 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

308

Amino Acids

35.03

Weight (kDa)

9.9

Isoelectric Point (pI)

37.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018589)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0390441
rosa_multiflora	Rmu_co8155526.1_g000001 Rmu_sc0003071.1_g000008 Rmu_sc0009053.1_g000002
rosa_samantha	Rh4CG035500 Rh5AG363200 Rh6BG236100
rosa_wichuraiana	Rw5G034190 Rw5G034250 Rw6G020250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	626
AasI	GACNNNNNNGTC	1 cut(s)	860
AccB7I	CCANNNNNTGG	1 cut(s)	760
AccII	CGCG	2 cut(s)	452, 594
AciI	CCGC	6 cut(s)	152, 165, 184, 450, 575, 844
AclWI	GGATC	3 cut(s)	275, 805, 818
AcoI	YGGCCR	1 cut(s)	882
AfaI	GTAC	2 cut(s)	11, 807
AfiI	CCNNNNNNNGG	1 cut(s)	760
AflIII	ACRYGT	1 cut(s)	592
AgsI	TTSAA	3 cut(s)	234, 390, 797
AjnI	CCWGG	2 cut(s)	481, 816
AluBI	AGCT	4 cut(s)	23, 79, 823, 924
AluI	AGCT	4 cut(s)	23, 79, 823, 924
Alw21I	GWGCWC	2 cut(s)	544, 663
Alw26I	GTCTC	2 cut(s)	37, 49
AlwI	GGATC	3 cut(s)	275, 805, 818
AlwNI	CAGNNNCTG	1 cut(s)	382
AoxI	GGCC	3 cut(s)	479, 845, 882
ApeKI	GCWGC	2 cut(s)	194, 637
ArsI	GACNNNNNNTTYG	2 cut(s)	293, 325
AspS9I	GGNCC	1 cut(s)	846
AsuHPI	GGTGA	3 cut(s)	416, 422, 589
AxyI	CCTNAGG	1 cut(s)	113
BamHI	GGATCC	1 cut(s)	810
BanII	GRGCYC	1 cut(s)	787
BarI	GAAGNNNNNNTAC	2 cut(s)	789, 821
Bbv12I	GWGCWC	2 cut(s)	544, 663
BbvI	GCAGC	2 cut(s)	181, 624
BceAI	ACGGC	1 cut(s)	897
BciT130I	CCWGG	2 cut(s)	483, 818
BciVI	GTATCC	1 cut(s)	678
BclI	TGATCA	1 cut(s)	277
BcoDI	GTCTC	2 cut(s)	37, 49
BfaI	CTAG	2 cut(s)	368, 477
BfmI	CTRYAG	1 cut(s)	80
BfuI	GTATCC	1 cut(s)	678
BisI	GCNGC	5 cut(s)	166, 195, 450, 638, 845
BlsI	GCNGC	5 cut(s)	167, 196, 451, 639, 846
Bme1390I	CCNGG	2 cut(s)	483, 818
BmgT120I	GGNCC	1 cut(s)	846
BmiI	GGNNCC	2 cut(s)	487, 812
BmrFI	CCNGG	2 cut(s)	483, 818
BmrI	ACTGGG	1 cut(s)	153
BmsI	GCATC	1 cut(s)	364
BmuI	ACTGGG	1 cut(s)	153
BpmI	CTGGAG	1 cut(s)	800
BsaJI	CCNNGG	3 cut(s)	393, 865, 879
Bsc4I	CCNNNNNNNGG	1 cut(s)	760
Bse1I	ACTGG	2 cut(s)	148, 668
Bse21I	CCTNAGG	1 cut(s)	113
Bse3DI	GCAATG	1 cut(s)	475
BseBI	CCWGG	2 cut(s)	483, 818
BseDI	CCNNGG	3 cut(s)	393, 865, 879
BseGI	GGATG	2 cut(s)	403, 720
BseLI	CCNNNNNNNGG	1 cut(s)	760
BseMI	GCAATG	1 cut(s)	475
BseMII	CTCAG	1 cut(s)	127
BseNI	ACTGG	2 cut(s)	148, 668
BseRI	GAGGAG	1 cut(s)	65
BseXI	GCAGC	2 cut(s)	181, 624
BseYI	CCCAGC	1 cut(s)	89
BsgI	GTGCAG	1 cut(s)	657
Bsh1236I	CGCG	2 cut(s)	452, 594
BshFI	GGCC	3 cut(s)	481, 847, 884
BsiHKAI	GWGCWC	2 cut(s)	544, 663
BslFI	GGGAC	1 cut(s)	151
BslI	CCNNNNNNNGG	1 cut(s)	760
BsmAI	GTCTC	2 cut(s)	37, 49
BsmFI	GGGAC	1 cut(s)	151
BsmI	GAATGC	1 cut(s)	91
BsnI	GGCC	3 cut(s)	481, 847, 884
Bsp1286I	GDGCHC	3 cut(s)	544, 663, 787
Bsp143I	GATC	4 cut(s)	267, 277, 420, 810
BspACI	CCGC	6 cut(s)	152, 165, 184, 450, 575, 844
BspANI	GGCC	3 cut(s)	481, 847, 884
BspCNI	CTCAG	1 cut(s)	126
BspFNI	CGCG	2 cut(s)	452, 594
BspLI	GGNNCC	2 cut(s)	487, 812
BspPI	GGATC	3 cut(s)	275, 805, 818
BsrDI	GCAATG	1 cut(s)	475
BsrI	ACTGG	2 cut(s)	148, 668
BssECI	CCNNGG	3 cut(s)	393, 865, 879
BssMI	GATC	4 cut(s)	267, 277, 420, 810
BssT1I	CCWWGG	1 cut(s)	393
Bst2UI	CCWGG	2 cut(s)	483, 818
Bst6I	CTCTTC	4 cut(s)	212, 320, 792, 897
BstAPI	GCANNNNNTGC	1 cut(s)	446
BstC8I	GCNNGC	2 cut(s)	842, 872
BstDEI	CTNAG	3 cut(s)	113, 246, 417
BstDSI	CCRYGG	2 cut(s)	865, 879
BstF5I	GGATG	2 cut(s)	403, 720
BstFNI	CGCG	2 cut(s)	452, 594
BstKTI	GATC	4 cut(s)	270, 280, 423, 813
BstMAI	GTCTC	2 cut(s)	37, 49
BstMBI	GATC	4 cut(s)	267, 277, 420, 810
BstMWI	GCNNNNNNNGC	3 cut(s)	446, 643, 782
BstNI	CCWGG	2 cut(s)	483, 818
BstNSI	RCATGY	2 cut(s)	229, 874
BstSCI	CCNGG	2 cut(s)	481, 816
BstSFI	CTRYAG	1 cut(s)	80
BstUI	CGCG	2 cut(s)	452, 594
BstV1I	GCAGC	2 cut(s)	181, 624
BstX2I	RGATCY	1 cut(s)	810
BstYI	RGATCY	1 cut(s)	810
Bsu36I	CCTNAGG	1 cut(s)	113
BsuI	GTATCC	1 cut(s)	678
BsuRI	GGCC	3 cut(s)	481, 847, 884
BtgI	CCRYGG	2 cut(s)	865, 879
BtsCI	GGATG	2 cut(s)	403, 720
BtsIMutI	CAGTG	1 cut(s)	661
Cac8I	GCNNGC	2 cut(s)	842, 872
CaiI	CAGNNNCTG	1 cut(s)	382
Cfr13I	GGNCC	1 cut(s)	846
CseI	GACGC	1 cut(s)	600
Csp6I	GTAC	2 cut(s)	10, 806
CviAII	CATG	3 cut(s)	226, 760, 871
CviQI	GTAC	2 cut(s)	10, 806
DdeI	CTNAG	3 cut(s)	113, 246, 417
DpnI	GATC	4 cut(s)	269, 279, 422, 812
DpnII	GATC	4 cut(s)	267, 277, 420, 810
DrdI	GACNNNNNNGTC	1 cut(s)	860
DseDI	GACNNNNNNGTC	1 cut(s)	860
EaeI	YGGCCR	1 cut(s)	882
Eam1104I	CTCTTC	4 cut(s)	212, 320, 792, 897
EarI	CTCTTC	4 cut(s)	212, 320, 792, 897
Eco130I	CCWWGG	1 cut(s)	393
Eco147I	AGGCCT	1 cut(s)	481
Eco24I	GRGCYC	1 cut(s)	787
Eco81I	CCTNAGG	1 cut(s)	113
EcoRII	CCWGG	2 cut(s)	481, 816
EcoT14I	CCWWGG	1 cut(s)	393
EcoT38I	GRGCYC	1 cut(s)	787
ErhI	CCWWGG	1 cut(s)	393
FaeI	CATG	3 cut(s)	229, 763, 874
FaqI	GGGAC	1 cut(s)	151
FatI	CATG	3 cut(s)	225, 759, 870
FauNDI	CATATG	1 cut(s)	728
FbaI	TGATCA	1 cut(s)	277
Fnu4HI	GCNGC	5 cut(s)	166, 195, 450, 638, 845
FokI	GGATG	2 cut(s)	410, 727
FriOI	GRGCYC	1 cut(s)	787
Fsp4HI	GCNGC	5 cut(s)	166, 195, 450, 638, 845
FspBI	CTAG	2 cut(s)	368, 477
GluI	GCNGC	5 cut(s)	166, 195, 450, 638, 845
GsaI	CCCAGC	1 cut(s)	93
GsuI	CTGGAG	1 cut(s)	800
HaeIII	GGCC	3 cut(s)	481, 847, 884
HgaI	GACGC	1 cut(s)	600
Hin1II	CATG	3 cut(s)	229, 763, 874
HinfI	GANTC	3 cut(s)	379, 386, 553
HphI	GGTGA	3 cut(s)	416, 422, 589
Hpy166II	GTNNAC	3 cut(s)	580, 601, 791
Hpy188I	TCNGA	1 cut(s)	17
Hpy188III	TCNNGA	2 cut(s)	107, 383
Hpy8I	GTNNAC	3 cut(s)	580, 601, 791
Hpy99I	CGWCG	1 cut(s)	594
HpyAV	CCTTC	3 cut(s)	141, 142, 649
HpyCH4IV	ACGT	2 cut(s)	12, 603
HpyCH4V	TGCA	4 cut(s)	125, 197, 286, 674
HpyF10VI	GCNNNNNNNGC	3 cut(s)	446, 643, 782
HpyF3I	CTNAG	3 cut(s)	113, 246, 417
HpySE526I	ACGT	2 cut(s)	12, 603
Hsp92II	CATG	3 cut(s)	229, 763, 874
Ksp22I	TGATCA	1 cut(s)	277
Kzo9I	GATC	4 cut(s)	267, 277, 420, 810
LmnI	GCTCC	4 cut(s)	28, 491, 658, 820
Lsp1109I	GCAGC	2 cut(s)	181, 624
LweI	GCATC	1 cut(s)	364
MaeI	CTAG	2 cut(s)	368, 477
MaeII	ACGT	2 cut(s)	12, 603
MaeIII	GTNAC	1 cut(s)	735
MalI	GATC	4 cut(s)	269, 279, 422, 812
MboI	GATC	4 cut(s)	267, 277, 420, 810
MboII	GAAGA	6 cut(s)	17, 229, 337, 713, 809, 884
MfeI	CAATTG	2 cut(s)	273, 520
MflI	RGATCY	1 cut(s)	810
MhlI	GDGCHC	3 cut(s)	544, 663, 787
MluCI	AATT	5 cut(s)	273, 520, 627, 704, 904
MluI	ACGCGT	1 cut(s)	592
MlyI	GAGTC	1 cut(s)	547
MseI	TTAA	2 cut(s)	689, 707
MspA1I	CMGCKG	1 cut(s)	575
MspR9I	CCNGG	2 cut(s)	483, 818
MunI	CAATTG	2 cut(s)	273, 520
Mva1269I	GAATGC	1 cut(s)	91
MvaI	CCWGG	2 cut(s)	483, 818
MvnI	CGCG	2 cut(s)	452, 594
MwoI	GCNNNNNNNGC	3 cut(s)	446, 643, 782
NdeI	CATATG	1 cut(s)	728
NdeII	GATC	4 cut(s)	267, 277, 420, 810
NlaIII	CATG	3 cut(s)	229, 763, 874
NlaIV	GGNNCC	2 cut(s)	487, 812
NmuCI	GTSAC	1 cut(s)	735
NspI	RCATGY	2 cut(s)	229, 874
PaeI	GCATGC	1 cut(s)	874
PceI	AGGCCT	1 cut(s)	481
PctI	GAATGC	1 cut(s)	91
PfeI	GAWTC	2 cut(s)	379, 386
PflMI	CCANNNNNTGG	1 cut(s)	760
PfoI	TCCNGGA	1 cut(s)	816
PkrI	GCNGC	5 cut(s)	167, 196, 451, 639, 846
PleI	GAGTC	1 cut(s)	547
PpsI	GAGTC	1 cut(s)	547
PsiI	TTATAA	1 cut(s)	626
Psp6I	CCWGG	2 cut(s)	481, 816
PspFI	CCCAGC	1 cut(s)	89
PspGI	CCWGG	2 cut(s)	481, 816
PspN4I	GGNNCC	2 cut(s)	487, 812
PspPI	GGNCC	1 cut(s)	846
PstNI	CAGNNNCTG	1 cut(s)	382
PsuI	RGATCY	1 cut(s)	810
RsaI	GTAC	2 cut(s)	11, 807
RsaNI	GTAC	2 cut(s)	10, 806
SaqAI	TTAA	2 cut(s)	689, 707
SatI	GCNGC	5 cut(s)	166, 195, 450, 638, 845
Sau3AI	GATC	4 cut(s)	267, 277, 420, 810
Sau96I	GGNCC	1 cut(s)	846
SchI	GAGTC	1 cut(s)	547
ScrFI	CCNGG	2 cut(s)	483, 818
SduI	GDGCHC	3 cut(s)	544, 663, 787
SfaNI	GCATC	1 cut(s)	364
SfcI	CTRYAG	1 cut(s)	80
SphI	GCATGC	1 cut(s)	874
Sse9I	AATT	5 cut(s)	273, 520, 627, 704, 904
SseBI	AGGCCT	1 cut(s)	481
SsiI	CCGC	6 cut(s)	152, 165, 184, 450, 575, 844
SspMI	CTAG	2 cut(s)	368, 477
StuI	AGGCCT	1 cut(s)	481
StyD4I	CCNGG	2 cut(s)	481, 816
StyI	CCWWGG	1 cut(s)	393
TaiI	ACGT	2 cut(s)	15, 606
TaqI	TCGA	1 cut(s)	589
TasI	AATT	5 cut(s)	273, 520, 627, 704, 904
TauI	GCSGC	3 cut(s)	168, 452, 847
TfiI	GAWTC	2 cut(s)	379, 386
Tru1I	TTAA	2 cut(s)	689, 707
Tru9I	TTAA	2 cut(s)	689, 707
TscAI	CASTG	1 cut(s)	668
TseFI	GTSAC	1 cut(s)	735
TseI	GCWGC	2 cut(s)	194, 637
Tsp45I	GTSAC	1 cut(s)	735
TspDTI	ATGAA	4 cut(s)	338, 350, 673, 761
TspGWI	ACGGA	4 cut(s)	550, 823, 854, 888
TspRI	CASTG	1 cut(s)	668
Van91I	CCANNNNNTGG	1 cut(s)	760
XceI	RCATGY	2 cut(s)	229, 874
XspI	CTAG	2 cut(s)	368, 477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.