Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009053.1

Orthogroup ID

OG0018589

Physical Location & Seq

Genomic Coordinates Forward (+)

16723 .. 18045

Gene Structure 1323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009053.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

atgagtctctttgaaggggcctctgacagcaagagaatcagcaaaacttccttgaaaaattgggtggtcaattgctttagagaacggagagcacttgctttgactctaactgacaccaaaacagcggtgaacagacttcgacgcgtggtggacgtattagttagcattattattataattatatggctgcttgtgctagatattgtcaccagagccaatattgtttatgcaacttctcagcttgtgattgtggcctttgtttttggtaactcatgcaagacagtctttgaagcagtcatatttctattcgtgatgcacccctttgacgtgggagatcgatgtgaaattgaaggagttcagatggttgtagaggagatgaatatcttaactacagtttttctaagtccggactcaggagatgctgttgagttctgtgtccatatagccactccagcagataagattgctgttatgaagcaaagaatgataagttacattgaaaataagaaggagcactggtatcctgcaccaatgttcatattaaaggaagtggaagaattaaataggatgaggtttgccatatggctgtcacatagaatgaacttccaagacatgggagaaaagtgggcaaggagagcccttttacttgaagagatagtacggatcctccaggagcttgacattgagtatcgtttgcggcccattgacataaacgtccgtggcatgcctcccacggccaccactctgcctccctctaatttcacagcaaccacaagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008381 GO:0009506 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

259

Amino Acids

29.74

Weight (kDa)

6.91

Isoelectric Point (pI)

50.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018589)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0390441
rosa_multiflora	Rmu_co8155526.1_g000001 Rmu_sc0003071.1_g000008 Rmu_sc0009053.1_g000002
rosa_samantha	Rh4CG035500 Rh5AG363200 Rh6BG236100
rosa_wichuraiana	Rw5G034190 Rw5G034250 Rw6G020250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	176
AasI	GACNNNNNNGTC	1 cut(s)	713
AccB7I	CCANNNNNTGG	1 cut(s)	613
AccII	CGCG	1 cut(s)	144
AccIII	TCCGGA	1 cut(s)	406
AciI	CCGC	2 cut(s)	125, 697
AclWI	GGATC	2 cut(s)	658, 671
AcoI	YGGCCR	1 cut(s)	735
AfaI	GTAC	1 cut(s)	660
AfiI	CCNNNNNNNGG	2 cut(s)	413, 613
AflIII	ACRYGT	1 cut(s)	142
AgsI	TTSAA	6 cut(s)	14, 55, 290, 350, 500, 650
AjiI	CACGTC	1 cut(s)	328
AjnI	CCWGG	1 cut(s)	669
AluBI	AGCT	3 cut(s)	241, 676, 777
AluI	AGCT	3 cut(s)	241, 676, 777
Alw21I	GWGCWC	2 cut(s)	94, 516
Alw26I	GTCTC	1 cut(s)	11
AlwI	GGATC	2 cut(s)	658, 671
Aor13HI	TCCGGA	1 cut(s)	406
AoxI	GGCC	4 cut(s)	18, 252, 698, 735
ApeKI	GCWGC	1 cut(s)	187
Asp700I	GAANNNNTTC	1 cut(s)	354
AspS9I	GGNCC	2 cut(s)	18, 699
AsuHPI	GGTGA	2 cut(s)	139, 199
BamHI	GGATCC	1 cut(s)	663
BanII	GRGCYC	1 cut(s)	640
BarI	GAAGNNNNNNTAC	2 cut(s)	642, 674
Bbv12I	GWGCWC	2 cut(s)	94, 516
BbvI	GCAGC	1 cut(s)	174
BccI	CCATC	1 cut(s)	355
BceAI	ACGGC	1 cut(s)	750
BciT130I	CCWGG	1 cut(s)	671
BciVI	GTATCC	1 cut(s)	531
BcoDI	GTCTC	1 cut(s)	11
BfaI	CTAG	1 cut(s)	197
BfmI	CTRYAG	1 cut(s)	390
BfuI	GTATCC	1 cut(s)	531
BisI	GCNGC	2 cut(s)	188, 698
BlsI	GCNGC	2 cut(s)	189, 699
Bme1390I	CCNGG	1 cut(s)	671
BmgBI	CACGTC	1 cut(s)	328
BmgT120I	GGNCC	2 cut(s)	18, 699
BmiI	GGNNCC	2 cut(s)	19, 665
BmrFI	CCNGG	1 cut(s)	671
BmsI	GCATC	2 cut(s)	303, 409
BpmI	CTGGAG	2 cut(s)	435, 653
Bsa29I	ATCGAT	1 cut(s)	337
BsaBI	GATNNNNATC	1 cut(s)	380
BsaJI	CCNNGG	2 cut(s)	718, 732
BsaWI	WCCGGW	1 cut(s)	406
BsaXI	ACNNNNNCTCC	8 cut(s)	408, 438, 503, 533, 651, 681, 733, 763
Bsc4I	CCNNNNNNNGG	2 cut(s)	413, 613
Bse1I	ACTGG	1 cut(s)	521
Bse8I	GATNNNNATC	1 cut(s)	380
BseAI	TCCGGA	1 cut(s)	406
BseBI	CCWGG	1 cut(s)	671
BseCI	ATCGAT	1 cut(s)	337
BseDI	CCNNGG	2 cut(s)	718, 732
BseGI	GGATG	1 cut(s)	573
BseJI	GATNNNNATC	1 cut(s)	380
BseLI	CCNNNNNNNGG	2 cut(s)	413, 613
BseMII	CTCAG	2 cut(s)	251, 426
BseNI	ACTGG	1 cut(s)	521
BseRI	GAGGAG	1 cut(s)	386
BseXI	GCAGC	1 cut(s)	174
BsgI	GTGCAG	1 cut(s)	510
Bsh1236I	CGCG	1 cut(s)	144
BshFI	GGCC	4 cut(s)	20, 254, 700, 737
BshVI	ATCGAT	1 cut(s)	337
BsiHKAI	GWGCWC	2 cut(s)	94, 516
BsiSI	CCGG	1 cut(s)	407
BslI	CCNNNNNNNGG	2 cut(s)	413, 613
BsmAI	GTCTC	1 cut(s)	11
BsnI	GGCC	4 cut(s)	20, 254, 700, 737
Bsp1286I	GDGCHC	3 cut(s)	94, 516, 640
Bsp13I	TCCGGA	1 cut(s)	406
Bsp143I	GATC	2 cut(s)	334, 663
BspACI	CCGC	2 cut(s)	125, 697
BspANI	GGCC	4 cut(s)	20, 254, 700, 737
BspCNI	CTCAG	2 cut(s)	250, 425
BspDI	ATCGAT	1 cut(s)	337
BspEI	TCCGGA	1 cut(s)	406
BspFNI	CGCG	1 cut(s)	144
BspLI	GGNNCC	2 cut(s)	19, 665
BspPI	GGATC	2 cut(s)	658, 671
BsrI	ACTGG	1 cut(s)	521
BssECI	CCNNGG	2 cut(s)	718, 732
BssMI	GATC	2 cut(s)	334, 663
Bst2UI	CCWGG	1 cut(s)	671
Bst4CI	ACNGT	2 cut(s)	283, 394
Bst6I	CTCTTC	1 cut(s)	645
BstC8I	GCNNGC	1 cut(s)	725
BstDEI	CTNAG	3 cut(s)	237, 401, 412
BstDSI	CCRYGG	2 cut(s)	718, 732
BstF5I	GGATG	1 cut(s)	573
BstFNI	CGCG	1 cut(s)	144
BstKTI	GATC	2 cut(s)	337, 666
BstMAI	GTCTC	1 cut(s)	11
BstMBI	GATC	2 cut(s)	334, 663
BstMWI	GCNNNNNNNGC	3 cut(s)	193, 452, 635
BstNI	CCWGG	1 cut(s)	671
BstNSI	RCATGY	1 cut(s)	727
BstSCI	CCNGG	1 cut(s)	669
BstSFI	CTRYAG	1 cut(s)	390
BstUI	CGCG	1 cut(s)	144
BstV1I	GCAGC	1 cut(s)	174
BstX2I	RGATCY	1 cut(s)	663
BstYI	RGATCY	1 cut(s)	663
Bsu15I	ATCGAT	1 cut(s)	337
BsuI	GTATCC	1 cut(s)	531
BsuRI	GGCC	4 cut(s)	20, 254, 700, 737
BsuTUI	ATCGAT	1 cut(s)	337
BtgI	CCRYGG	2 cut(s)	718, 732
BtrI	CACGTC	1 cut(s)	328
BtsCI	GGATG	1 cut(s)	573
BtsIMutI	CAGTG	1 cut(s)	514
Cac8I	GCNNGC	1 cut(s)	725
Cfr13I	GGNCC	2 cut(s)	18, 699
ClaI	ATCGAT	1 cut(s)	337
CseI	GACGC	1 cut(s)	150
Csp6I	GTAC	1 cut(s)	659
CviAII	CATG	3 cut(s)	273, 613, 724
CviQI	GTAC	1 cut(s)	659
DdeI	CTNAG	3 cut(s)	237, 401, 412
DpnI	GATC	2 cut(s)	336, 665
DpnII	GATC	2 cut(s)	334, 663
DrdI	GACNNNNNNGTC	1 cut(s)	713
DseDI	GACNNNNNNGTC	1 cut(s)	713
EaeI	YGGCCR	1 cut(s)	735
Eam1104I	CTCTTC	1 cut(s)	645
EarI	CTCTTC	1 cut(s)	645
Eco24I	GRGCYC	1 cut(s)	640
EcoO109I	RGGNCCY	1 cut(s)	18
EcoRII	CCWGG	1 cut(s)	669
EcoT38I	GRGCYC	1 cut(s)	640
FaeI	CATG	3 cut(s)	276, 616, 727
FalI	AAGNNNNNCTT	2 cut(s)	269, 301
FatI	CATG	3 cut(s)	272, 612, 723
FauNDI	CATATG	1 cut(s)	581
Fnu4HI	GCNGC	2 cut(s)	188, 698
FokI	GGATG	1 cut(s)	580
FriOI	GRGCYC	1 cut(s)	640
Fsp4HI	GCNGC	2 cut(s)	188, 698
FspBI	CTAG	1 cut(s)	197
GluI	GCNGC	2 cut(s)	188, 698
GsuI	CTGGAG	2 cut(s)	435, 653
HaeIII	GGCC	4 cut(s)	20, 254, 700, 737
HapII	CCGG	1 cut(s)	407
HgaI	GACGC	1 cut(s)	150
Hin1II	CATG	3 cut(s)	276, 616, 727
HinfI	GANTC	4 cut(s)	4, 36, 103, 410
HpaII	CCGG	1 cut(s)	407
HphI	GGTGA	2 cut(s)	139, 199
Hpy166II	GTNNAC	2 cut(s)	130, 151
Hpy188I	TCNGA	2 cut(s)	25, 360
Hpy188III	TCNNGA	3 cut(s)	310, 407, 414
Hpy8I	GTNNAC	2 cut(s)	130, 151
Hpy99I	CGWCG	1 cut(s)	144
HpyAV	CCTTC	3 cut(s)	8, 344, 502
HpyCH4III	ACNGT	2 cut(s)	283, 394
HpyCH4IV	ACGT	3 cut(s)	153, 327, 714
HpyCH4V	TGCA	4 cut(s)	230, 276, 316, 527
HpyF10VI	GCNNNNNNNGC	3 cut(s)	193, 452, 635
HpyF3I	CTNAG	3 cut(s)	237, 401, 412
HpySE526I	ACGT	3 cut(s)	153, 327, 714
Hsp92II	CATG	3 cut(s)	276, 616, 727
Kpn2I	TCCGGA	1 cut(s)	406
Kzo9I	GATC	2 cut(s)	334, 663
LmnI	GCTCC	2 cut(s)	511, 673
LpnPI	CCDG	8 cut(s)	223, 399, 420, 465, 502, 537, 656, 683
Lsp1109I	GCAGC	1 cut(s)	174
LweI	GCATC	2 cut(s)	303, 409
MaeI	CTAG	1 cut(s)	197
MaeII	ACGT	3 cut(s)	153, 327, 714
MaeIII	GTNAC	4 cut(s)	205, 266, 491, 588
MalI	GATC	2 cut(s)	336, 665
MboI	GATC	2 cut(s)	334, 663
MboII	GAAGA	2 cut(s)	566, 662
MfeI	CAATTG	1 cut(s)	70
MflI	RGATCY	1 cut(s)	663
MhlI	GDGCHC	3 cut(s)	94, 516, 640
MluCI	AATT	6 cut(s)	58, 70, 177, 345, 557, 757
MluI	ACGCGT	1 cut(s)	142
MlyI	GAGTC	3 cut(s)	13, 97, 404
MnlI	CCTC	7 cut(s)	31, 364, 564, 677, 738, 759, 763
MroI	TCCGGA	1 cut(s)	406
MroXI	GAANNNNTTC	1 cut(s)	354
MseI	TTAA	3 cut(s)	386, 542, 560
MspA1I	CMGCKG	1 cut(s)	125
MspI	CCGG	1 cut(s)	407
MspR9I	CCNGG	1 cut(s)	671
MunI	CAATTG	1 cut(s)	70
MvaI	CCWGG	1 cut(s)	671
MvnI	CGCG	1 cut(s)	144
MwoI	GCNNNNNNNGC	3 cut(s)	193, 452, 635
NdeI	CATATG	1 cut(s)	581
NdeII	GATC	2 cut(s)	334, 663
NlaIII	CATG	3 cut(s)	276, 616, 727
NlaIV	GGNNCC	2 cut(s)	19, 665
NmuCI	GTSAC	2 cut(s)	205, 588
NspI	RCATGY	1 cut(s)	727
PaeI	GCATGC	1 cut(s)	727
PdmI	GAANNNNTTC	1 cut(s)	354
PfeI	GAWTC	1 cut(s)	36
PflMI	CCANNNNNTGG	1 cut(s)	613
PfoI	TCCNGGA	1 cut(s)	669
PkrI	GCNGC	2 cut(s)	189, 699
PleI	GAGTC	3 cut(s)	12, 97, 404
PpsI	GAGTC	3 cut(s)	12, 97, 404
PsiI	TTATAA	1 cut(s)	176
Psp6I	CCWGG	1 cut(s)	669
PspGI	CCWGG	1 cut(s)	669
PspN4I	GGNNCC	2 cut(s)	19, 665
PspPI	GGNCC	2 cut(s)	18, 699
PsuI	RGATCY	1 cut(s)	663
RsaI	GTAC	1 cut(s)	660
RsaNI	GTAC	1 cut(s)	659
SaqAI	TTAA	3 cut(s)	386, 542, 560
SatI	GCNGC	2 cut(s)	188, 698
Sau3AI	GATC	2 cut(s)	334, 663
Sau96I	GGNCC	2 cut(s)	18, 699
SchI	GAGTC	3 cut(s)	13, 97, 404
ScrFI	CCNGG	1 cut(s)	671
SduI	GDGCHC	3 cut(s)	94, 516, 640
SetI	ASST	7 cut(s)	156, 243, 330, 575, 678, 717, 779
SfaNI	GCATC	2 cut(s)	303, 409
SfcI	CTRYAG	1 cut(s)	390
SphI	GCATGC	1 cut(s)	727
Sse9I	AATT	6 cut(s)	58, 70, 177, 345, 557, 757
SsiI	CCGC	2 cut(s)	125, 697
SspI	AATATT	1 cut(s)	220
SspMI	CTAG	1 cut(s)	197
StyD4I	CCNGG	1 cut(s)	669
TaaI	ACNGT	2 cut(s)	283, 394
TaiI	ACGT	3 cut(s)	156, 330, 717
TaqI	TCGA	2 cut(s)	139, 337
TasI	AATT	6 cut(s)	58, 70, 177, 345, 557, 757
TauI	GCSGC	1 cut(s)	700
TfiI	GAWTC	1 cut(s)	36
Tru1I	TTAA	3 cut(s)	386, 542, 560
Tru9I	TTAA	3 cut(s)	386, 542, 560
TscAI	CASTG	1 cut(s)	521
TseFI	GTSAC	2 cut(s)	205, 588
TseI	GCWGC	1 cut(s)	187
Tsp45I	GTSAC	2 cut(s)	205, 588
TspDTI	ATGAA	4 cut(s)	392, 488, 526, 614
TspGWI	ACGGA	3 cut(s)	100, 676, 707
TspRI	CASTG	1 cut(s)	521
Van91I	CCANNNNNTGG	1 cut(s)	613
XceI	RCATGY	1 cut(s)	727
XmnI	GAANNNNTTC	1 cut(s)	354
XspI	CTAG	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.