Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0018589

Physical Location & Seq

Genomic Coordinates Reverse (-)

61352220 .. 61354162

Gene Structure 1943 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG363200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGCCTCCTGACCTCAGGGCAAGTGCATTTCCTTCTAGGACAACTGGGAAGGTGGTTGGGAATGGCGGCTATGGTAGAAGTGGGCGGTTGATTGCTGCAAGTGGAGGGCTTGTGGAGAAGAGTGGCATGTTTTCAAAGCCACTTTCAAAGAAGTCAGGGGAGGTTGGGATCACAATTGATCACTTGCATAGGCTCAATCCAAAGAATGTGTTTGCTTGGAATATGAAGAGGCTAATGAATATAGTAAAATATGGGCATCTTACCACACTAGATGAGCAGATTCTGGATTCAACCAAGGATGAGGGTGAGGGTGATACTAAGATCAAAAGTGAAGTTGAGGCAAAGGTTGCCGCGAAAAAGATATTTCGCAATGTGGCTAGGCCTGGCTCCAAAATGAACTTCCAAGACATGGGAGAAAAGTGGGCAAGGAGAGCCCGTTTACTTGAAGAGATAGTACGGATCCTCCAGGAGCTTAACATTGAGTATCGTTTGCGGCCCATTGACATAAATGTCCGTGGCATGCCTCCCACGGCCACCACTCTTCCTCCGTCTAATTTCACAGCAACCACAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008381 GO:0009506 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

191

Amino Acids

21.15

Weight (kDa)

10.03

Isoelectric Point (pI)

41.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018589)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0390441
rosa_multiflora	Rmu_co8155526.1_g000001 Rmu_sc0003071.1_g000008 Rmu_sc0009053.1_g000002
rosa_samantha	Rh4CG035500 Rh5AG363200 Rh6BG236100
rosa_wichuraiana	Rw5G034190 Rw5G034250 Rw6G020250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	509
AccB7I	CCANNNNNTGG	1 cut(s)	409
AccII	CGCG	1 cut(s)	353
AciI	CCGC	4 cut(s)	66, 85, 351, 493
AclWI	GGATC	3 cut(s)	176, 454, 467
AcoI	YGGCCR	1 cut(s)	531
AfaI	GTAC	1 cut(s)	456
AfiI	CCNNNNNNNGG	1 cut(s)	409
AgsI	TTSAA	4 cut(s)	135, 147, 291, 446
AjnI	CCWGG	2 cut(s)	382, 465
AjuI	GAANNNNNNNTTGG	2 cut(s)	383, 415
AluBI	AGCT	2 cut(s)	472, 573
AluI	AGCT	2 cut(s)	472, 573
AlwI	GGATC	3 cut(s)	176, 454, 467
AlwNI	CAGNNNCTG	1 cut(s)	283
AoxI	GGCC	3 cut(s)	380, 494, 531
ApeKI	GCWGC	1 cut(s)	95
AspS9I	GGNCC	1 cut(s)	495
AsuHPI	GGTGA	2 cut(s)	317, 323
AxyI	CCTNAGG	1 cut(s)	14
BamHI	GGATCC	1 cut(s)	459
BanII	GRGCYC	1 cut(s)	436
BarI	GAAGNNNNNNTAC	2 cut(s)	438, 470
BbvI	GCAGC	1 cut(s)	82
BceAI	ACGGC	1 cut(s)	546
BciT130I	CCWGG	2 cut(s)	384, 467
BclI	TGATCA	1 cut(s)	178
BfaI	CTAG	3 cut(s)	36, 269, 378
BisI	GCNGC	4 cut(s)	67, 96, 351, 494
BlsI	GCNGC	4 cut(s)	68, 97, 352, 495
Bme1390I	CCNGG	2 cut(s)	384, 467
BmgT120I	GGNCC	1 cut(s)	495
BmiI	GGNNCC	2 cut(s)	388, 461
BmrFI	CCNGG	2 cut(s)	384, 467
BmrI	ACTGGG	1 cut(s)	54
BmsI	GCATC	1 cut(s)	265
BmuI	ACTGGG	1 cut(s)	54
BpmI	CTGGAG	1 cut(s)	449
BsaJI	CCNNGG	3 cut(s)	294, 514, 528
BsaXI	ACNNNNNCTCC	8 cut(s)	96, 126, 421, 447, 451, 477, 529, 559
Bsc4I	CCNNNNNNNGG	1 cut(s)	409
Bse1I	ACTGG	1 cut(s)	49
Bse21I	CCTNAGG	1 cut(s)	14
Bse3DI	GCAATG	1 cut(s)	376
BseBI	CCWGG	2 cut(s)	384, 467
BseDI	CCNNGG	3 cut(s)	294, 514, 528
BseGI	GGATG	1 cut(s)	304
BseLI	CCNNNNNNNGG	1 cut(s)	409
BseMI	GCAATG	1 cut(s)	376
BseMII	CTCAG	1 cut(s)	28
BseNI	ACTGG	1 cut(s)	49
BseXI	GCAGC	1 cut(s)	82
Bsh1236I	CGCG	1 cut(s)	353
BshFI	GGCC	3 cut(s)	382, 496, 533
BslI	CCNNNNNNNGG	1 cut(s)	409
BsnI	GGCC	3 cut(s)	382, 496, 533
Bsp1286I	GDGCHC	1 cut(s)	436
Bsp143I	GATC	4 cut(s)	168, 178, 321, 459
BspACI	CCGC	4 cut(s)	66, 85, 351, 493
BspANI	GGCC	3 cut(s)	382, 496, 533
BspCNI	CTCAG	1 cut(s)	27
BspFNI	CGCG	1 cut(s)	353
BspLI	GGNNCC	2 cut(s)	388, 461
BspPI	GGATC	3 cut(s)	176, 454, 467
BsrDI	GCAATG	1 cut(s)	376
BsrI	ACTGG	1 cut(s)	49
BssECI	CCNNGG	3 cut(s)	294, 514, 528
BssMI	GATC	4 cut(s)	168, 178, 321, 459
BssT1I	CCWWGG	1 cut(s)	294
Bst2UI	CCWGG	2 cut(s)	384, 467
Bst6I	CTCTTC	4 cut(s)	113, 221, 441, 546
BstAPI	GCANNNNNTGC	1 cut(s)	347
BstC8I	GCNNGC	1 cut(s)	521
BstDEI	CTNAG	2 cut(s)	14, 318
BstDSI	CCRYGG	2 cut(s)	514, 528
BstF5I	GGATG	1 cut(s)	304
BstFNI	CGCG	1 cut(s)	353
BstKTI	GATC	4 cut(s)	171, 181, 324, 462
BstMBI	GATC	4 cut(s)	168, 178, 321, 459
BstMWI	GCNNNNNNNGC	2 cut(s)	347, 431
BstNI	CCWGG	2 cut(s)	384, 467
BstNSI	RCATGY	2 cut(s)	130, 523
BstSCI	CCNGG	2 cut(s)	382, 465
BstUI	CGCG	1 cut(s)	353
BstV1I	GCAGC	1 cut(s)	82
BstX2I	RGATCY	1 cut(s)	459
BstYI	RGATCY	1 cut(s)	459
Bsu36I	CCTNAGG	1 cut(s)	14
BsuRI	GGCC	3 cut(s)	382, 496, 533
BtgI	CCRYGG	2 cut(s)	514, 528
BtsCI	GGATG	1 cut(s)	304
Cac8I	GCNNGC	1 cut(s)	521
CaiI	CAGNNNCTG	1 cut(s)	283
Cfr13I	GGNCC	1 cut(s)	495
Csp6I	GTAC	1 cut(s)	455
CviAII	CATG	3 cut(s)	127, 409, 520
CviQI	GTAC	1 cut(s)	455
DdeI	CTNAG	2 cut(s)	14, 318
DpnI	GATC	4 cut(s)	170, 180, 323, 461
DpnII	GATC	4 cut(s)	168, 178, 321, 459
DrdI	GACNNNNNNGTC	1 cut(s)	509
DseDI	GACNNNNNNGTC	1 cut(s)	509
EaeI	YGGCCR	1 cut(s)	531
Eam1104I	CTCTTC	4 cut(s)	113, 221, 441, 546
EarI	CTCTTC	4 cut(s)	113, 221, 441, 546
Eco130I	CCWWGG	1 cut(s)	294
Eco147I	AGGCCT	1 cut(s)	382
Eco24I	GRGCYC	1 cut(s)	436
Eco81I	CCTNAGG	1 cut(s)	14
EcoRII	CCWGG	2 cut(s)	382, 465
EcoT14I	CCWWGG	1 cut(s)	294
EcoT38I	GRGCYC	1 cut(s)	436
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	3 cut(s)	130, 412, 523
FaiI	YATR	9 cut(s)	72, 128, 189, 224, 242, 252, 410, 506, 521
FatI	CATG	3 cut(s)	126, 408, 519
FbaI	TGATCA	1 cut(s)	178
Fnu4HI	GCNGC	4 cut(s)	67, 96, 351, 494
FokI	GGATG	1 cut(s)	311
FriOI	GRGCYC	1 cut(s)	436
Fsp4HI	GCNGC	4 cut(s)	67, 96, 351, 494
FspBI	CTAG	3 cut(s)	36, 269, 378
GluI	GCNGC	4 cut(s)	67, 96, 351, 494
GsuI	CTGGAG	1 cut(s)	449
HaeIII	GGCC	3 cut(s)	382, 496, 533
Hin1II	CATG	3 cut(s)	130, 412, 523
HinfI	GANTC	2 cut(s)	280, 287
HphI	GGTGA	2 cut(s)	317, 323
Hpy166II	GTNNAC	1 cut(s)	440
Hpy188III	TCNNGA	2 cut(s)	8, 284
Hpy8I	GTNNAC	1 cut(s)	440
HpyAV	CCTTC	2 cut(s)	42, 43
HpyCH4V	TGCA	3 cut(s)	26, 98, 187
HpyF10VI	GCNNNNNNNGC	2 cut(s)	347, 431
HpyF3I	CTNAG	2 cut(s)	14, 318
Hsp92II	CATG	3 cut(s)	130, 412, 523
Ksp22I	TGATCA	1 cut(s)	178
Kzo9I	GATC	4 cut(s)	168, 178, 321, 459
LmnI	GCTCC	2 cut(s)	392, 469
LpnPI	CCDG	8 cut(s)	21, 30, 141, 269, 369, 396, 452, 479
Lsp1109I	GCAGC	1 cut(s)	82
LweI	GCATC	1 cut(s)	265
MaeI	CTAG	3 cut(s)	36, 269, 378
MalI	GATC	4 cut(s)	170, 180, 323, 461
MboI	GATC	4 cut(s)	168, 178, 321, 459
MboII	GAAGA	4 cut(s)	130, 238, 458, 533
MfeI	CAATTG	1 cut(s)	174
MflI	RGATCY	1 cut(s)	459
MhlI	GDGCHC	1 cut(s)	436
MluCI	AATT	2 cut(s)	174, 553
MseI	TTAA	1 cut(s)	474
MspR9I	CCNGG	2 cut(s)	384, 467
MunI	CAATTG	1 cut(s)	174
MvaI	CCWGG	2 cut(s)	384, 467
MvnI	CGCG	1 cut(s)	353
MwoI	GCNNNNNNNGC	2 cut(s)	347, 431
NdeII	GATC	4 cut(s)	168, 178, 321, 459
NlaIII	CATG	3 cut(s)	130, 412, 523
NlaIV	GGNNCC	2 cut(s)	388, 461
NspI	RCATGY	2 cut(s)	130, 523
PaeI	GCATGC	1 cut(s)	523
PceI	AGGCCT	1 cut(s)	382
PfeI	GAWTC	2 cut(s)	280, 287
PflMI	CCANNNNNTGG	1 cut(s)	409
PfoI	TCCNGGA	1 cut(s)	465
PkrI	GCNGC	4 cut(s)	68, 97, 352, 495
Psp6I	CCWGG	2 cut(s)	382, 465
PspGI	CCWGG	2 cut(s)	382, 465
PspN4I	GGNNCC	2 cut(s)	388, 461
PspPI	GGNCC	1 cut(s)	495
PstNI	CAGNNNCTG	1 cut(s)	283
PsuI	RGATCY	1 cut(s)	459
RsaI	GTAC	1 cut(s)	456
RsaNI	GTAC	1 cut(s)	455
SaqAI	TTAA	1 cut(s)	474
SatI	GCNGC	4 cut(s)	67, 96, 351, 494
Sau3AI	GATC	4 cut(s)	168, 178, 321, 459
Sau96I	GGNCC	1 cut(s)	495
ScrFI	CCNGG	2 cut(s)	384, 467
SduI	GDGCHC	1 cut(s)	436
SetI	ASST	6 cut(s)	15, 54, 165, 348, 474, 575
SfaNI	GCATC	1 cut(s)	265
SphI	GCATGC	1 cut(s)	523
Sse9I	AATT	2 cut(s)	174, 553
SseBI	AGGCCT	1 cut(s)	382
SsiI	CCGC	4 cut(s)	66, 85, 351, 493
SspMI	CTAG	3 cut(s)	36, 269, 378
StuI	AGGCCT	1 cut(s)	382
StyD4I	CCNGG	2 cut(s)	382, 465
StyI	CCWWGG	1 cut(s)	294
TasI	AATT	2 cut(s)	174, 553
TauI	GCSGC	3 cut(s)	69, 353, 496
TfiI	GAWTC	2 cut(s)	280, 287
Tru1I	TTAA	1 cut(s)	474
Tru9I	TTAA	1 cut(s)	474
TseI	GCWGC	1 cut(s)	95
TspDTI	ATGAA	3 cut(s)	239, 251, 410
TspGWI	ACGGA	3 cut(s)	472, 503, 537
Van91I	CCANNNNNTGG	1 cut(s)	409
XceI	RCATGY	2 cut(s)	130, 523
XspI	CTAG	3 cut(s)	36, 269, 378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.