Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0018589

Physical Location & Seq

Genomic Coordinates Reverse (-)

40520283 .. 40522838

Gene Structure 2556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G020250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGCCTCCTGACCTCAGGGCAAGTGCATTTCCTTCTGGGACAACTGGGAAGGCGGTTGGGAATGGCGGCTCTGGTAGAAGTGGGCGGTTGATTGCTGCAAGTGGAGGGCTTGTGGGGAAGAGTGGCATGTTTTCAAAGCCACTTTCCAAGAAGTCAGGGGAGGTTGGGATCACCATTGATCACTTGCATAGGCTCAATCCAAAGAATGTGTCTGCTTGGAATATGAAGAGGCTAATGAATATAGTAAAATATGGGCATCTTACCACACTGGATGAGCAGATTCTGGATTCAACCAAGGATGAGGGTGAGGGTGATACTAAGATCAAAAGTGAAGTTGAGGCAAAGGCTGCCGCGAAAAAGATATTTCGCAATGTGGCTAGGCCTGGCTCCAAGCACATCTACCTGGAGGATTTGTTGCGTTTCATGCAAGAAGACGAGGCTTTAAAGACCATGAGTCTCTTTGAAGGGGCCTCTGACAGCAAGAGAATCAGCAAAACTTCCTTGAAAAATTGGGTGGTCAATTGCTTTAGAGAACGGAGAGCACTTGCTTTGACTCTAACTGACACCAAAACAGCGGTGAACAGACTTCGACGCGTGGTGGACGTATTAGTTAGCATTATTATTATAATTATATGGCTGCTTGTGCTGGATATTGTCACCAGAGCCAATATTGTTTATGCAACTTCTCAGCTTGTGATTGTGGCCTTTGTTTTTGGTAACTCATGCAAGACAGTCTTTGAAGCAGTCATATTTCTATTCGTGATGCACCCCTTTGACGTGGGAGATCGATGTGAAATTGAAGGAGTTCAGATGGTTGTAGAGGAGATGAATATCTTAACTACAGTTTTTCTAAGGTATGACAACGTAAAAATCGTGTACCCAAACAGTACCCTTGCAACTAAGCCCATCAATAACTTCTATCGTAGTCCGGACTCAGGAGATGCTGTTGAGTTCTGTGTCCATATAGCCACTCCAGCAGATAAGATTGCTGTTATGAAGCAAAGAATGATAAGTTACATTGAAAATAAGAAGGAGCACTGGTATCCTGCACCAATGTTCATATTAAAGGAAGTGGAAGAATTAAATAGGATGAGGTTTGCCATTTGGCTGTCACATAGAATGAACTTCCAAGACATGGGAGAAAAGTGGGCAAGGAGAGCCCTTTTACTTGAAGAGATAGTACGGATCCTCCAGGAGCTTGACATTGAGTATCGTTTGCGGCCCATTGACATAAACGTCCGTGGCATGCCTCCCACGGCCACCACTCTGCCTCCCTCTAATTTCACAGCAACCACAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008381 GO:0009506 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

433

Amino Acids

48.77

Weight (kDa)

9.3

Isoelectric Point (pI)

42.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MS_channel_2nd	PF00924	250 - 306	4e-11	Mechanosensitive ion channel, beta-domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018589)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0390441
rosa_multiflora	Rmu_co8155526.1_g000001 Rmu_sc0003071.1_g000008 Rmu_sc0009053.1_g000002
rosa_samantha	Rh4CG035500 Rh5AG363200 Rh6BG236100
rosa_wichuraiana	Rw5G034190 Rw5G034250 Rw6G020250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	626
AasI	GACNNNNNNGTC	1 cut(s)	1235
AccB7I	CCANNNNNTGG	1 cut(s)	1135
AccII	CGCG	2 cut(s)	353, 594
AccIII	TCCGGA	1 cut(s)	928
AciI	CCGC	6 cut(s)	53, 66, 85, 351, 575, 1219
AclWI	GGATC	3 cut(s)	176, 1180, 1193
AcoI	YGGCCR	1 cut(s)	1257
AfaI	GTAC	3 cut(s)	878, 889, 1182
AfiI	CCNNNNNNNGG	2 cut(s)	935, 1135
AflIII	ACRYGT	1 cut(s)	592
AgsI	TTSAA	8 cut(s)	135, 291, 464, 505, 740, 800, 1022, 1172
AhdI	GACNNNNNGTC	1 cut(s)	453
AjiI	CACGTC	1 cut(s)	778
AjnI	CCWGG	3 cut(s)	382, 402, 1191
AluBI	AGCT	3 cut(s)	691, 1198, 1299
AluI	AGCT	3 cut(s)	691, 1198, 1299
Alw21I	GWGCWC	2 cut(s)	544, 1038
Alw26I	GTCTC	1 cut(s)	461
AlwI	GGATC	3 cut(s)	176, 1180, 1193
AlwNI	CAGNNNCTG	1 cut(s)	283
Aor13HI	TCCGGA	1 cut(s)	928
AoxI	GGCC	5 cut(s)	380, 468, 702, 1220, 1257
ApeKI	GCWGC	3 cut(s)	95, 347, 637
ArsI	GACNNNNNNTTYG	2 cut(s)	194, 226
Asp700I	GAANNNNTTC	1 cut(s)	804
AspS9I	GGNCC	2 cut(s)	468, 1221
AsuHPI	GGTGA	5 cut(s)	163, 317, 323, 589, 649
AxyI	CCTNAGG	1 cut(s)	14
BamHI	GGATCC	1 cut(s)	1185
BanII	GRGCYC	1 cut(s)	1162
BarI	GAAGNNNNNNTAC	2 cut(s)	1164, 1196
BbsI	GAAGAC	1 cut(s)	438
Bbv12I	GWGCWC	2 cut(s)	544, 1038
BbvI	GCAGC	3 cut(s)	82, 334, 624
BccI	CCATC	2 cut(s)	805, 914
BceAI	ACGGC	1 cut(s)	1272
BciT130I	CCWGG	3 cut(s)	384, 404, 1193
BciVI	GTATCC	1 cut(s)	1053
BclI	TGATCA	1 cut(s)	178
BcoDI	GTCTC	1 cut(s)	461
BfaI	CTAG	1 cut(s)	378
BfmI	CTRYAG	1 cut(s)	840
BfuI	GTATCC	1 cut(s)	1053
BisI	GCNGC	6 cut(s)	67, 96, 348, 351, 638, 1220
BlsI	GCNGC	6 cut(s)	68, 97, 349, 352, 639, 1221
Bme1390I	CCNGG	3 cut(s)	384, 404, 1193
BmeRI	GACNNNNNGTC	1 cut(s)	453
BmgBI	CACGTC	1 cut(s)	778
BmgT120I	GGNCC	2 cut(s)	468, 1221
BmiI	GGNNCC	3 cut(s)	388, 469, 1187
BmrFI	CCNGG	3 cut(s)	384, 404, 1193
BmrI	ACTGGG	1 cut(s)	54
BmsI	GCATC	3 cut(s)	265, 753, 931
BmuI	ACTGGG	1 cut(s)	54
BpiI	GAAGAC	1 cut(s)	438
BpmI	CTGGAG	3 cut(s)	425, 957, 1175
Bsa29I	ATCGAT	1 cut(s)	787
BsaBI	GATNNNNATC	1 cut(s)	830
BsaJI	CCNNGG	3 cut(s)	294, 1240, 1254
BsaWI	WCCGGW	1 cut(s)	928
Bsc4I	CCNNNNNNNGG	2 cut(s)	935, 1135
Bse1I	ACTGG	3 cut(s)	49, 273, 1043
Bse21I	CCTNAGG	1 cut(s)	14
Bse3DI	GCAATG	1 cut(s)	376
Bse8I	GATNNNNATC	1 cut(s)	830
BseAI	TCCGGA	1 cut(s)	928
BseBI	CCWGG	3 cut(s)	384, 404, 1193
BseCI	ATCGAT	1 cut(s)	787
BseDI	CCNNGG	3 cut(s)	294, 1240, 1254
BseGI	GGATG	3 cut(s)	277, 304, 1095
BseJI	GATNNNNATC	1 cut(s)	830
BseLI	CCNNNNNNNGG	2 cut(s)	935, 1135
BseMI	GCAATG	1 cut(s)	376
BseMII	CTCAG	3 cut(s)	28, 701, 948
BseNI	ACTGG	3 cut(s)	49, 273, 1043
BseRI	GAGGAG	1 cut(s)	836
BseXI	GCAGC	3 cut(s)	82, 334, 624
BsgI	GTGCAG	1 cut(s)	1032
Bsh1236I	CGCG	2 cut(s)	353, 594
BshFI	GGCC	5 cut(s)	382, 470, 704, 1222, 1259
BshVI	ATCGAT	1 cut(s)	787
BsiHKAI	GWGCWC	2 cut(s)	544, 1038
BsiSI	CCGG	1 cut(s)	929
BslFI	GGGAC	1 cut(s)	52
BslI	CCNNNNNNNGG	2 cut(s)	935, 1135
BsmAI	GTCTC	1 cut(s)	461
BsmFI	GGGAC	1 cut(s)	52
BsnI	GGCC	5 cut(s)	382, 470, 704, 1222, 1259
Bsp1286I	GDGCHC	3 cut(s)	544, 1038, 1162
Bsp13I	TCCGGA	1 cut(s)	928
Bsp143I	GATC	5 cut(s)	168, 178, 321, 784, 1185
BspACI	CCGC	6 cut(s)	53, 66, 85, 351, 575, 1219
BspANI	GGCC	5 cut(s)	382, 470, 704, 1222, 1259
BspCNI	CTCAG	3 cut(s)	27, 700, 947
BspDI	ATCGAT	1 cut(s)	787
BspEI	TCCGGA	1 cut(s)	928
BspFNI	CGCG	2 cut(s)	353, 594
BspLI	GGNNCC	3 cut(s)	388, 469, 1187
BspPI	GGATC	3 cut(s)	176, 1180, 1193
BsrDI	GCAATG	1 cut(s)	376
BsrI	ACTGG	3 cut(s)	49, 273, 1043
BssECI	CCNNGG	3 cut(s)	294, 1240, 1254
BssMI	GATC	5 cut(s)	168, 178, 321, 784, 1185
BssT1I	CCWWGG	1 cut(s)	294
Bst2UI	CCWGG	3 cut(s)	384, 404, 1193
Bst4CI	ACNGT	3 cut(s)	733, 844, 887
Bst6I	CTCTTC	3 cut(s)	113, 221, 1167
BstAPI	GCANNNNNTGC	1 cut(s)	347
BstC8I	GCNNGC	1 cut(s)	1247
BstDEI	CTNAG	6 cut(s)	14, 318, 687, 851, 900, 934
BstDSI	CCRYGG	2 cut(s)	1240, 1254
BstF5I	GGATG	3 cut(s)	277, 304, 1095
BstFNI	CGCG	2 cut(s)	353, 594
BstKTI	GATC	5 cut(s)	171, 181, 324, 787, 1188
BstMAI	GTCTC	1 cut(s)	461
BstMBI	GATC	5 cut(s)	168, 178, 321, 784, 1185
BstMWI	GCNNNNNNNGC	5 cut(s)	347, 424, 643, 974, 1157
BstNI	CCWGG	3 cut(s)	384, 404, 1193
BstNSI	RCATGY	2 cut(s)	130, 1249
BstSCI	CCNGG	3 cut(s)	382, 402, 1191
BstSFI	CTRYAG	1 cut(s)	840
BstUI	CGCG	2 cut(s)	353, 594
BstV1I	GCAGC	3 cut(s)	82, 334, 624
BstV2I	GAAGAC	1 cut(s)	438
BstX2I	RGATCY	1 cut(s)	1185
BstYI	RGATCY	1 cut(s)	1185
Bsu15I	ATCGAT	1 cut(s)	787
Bsu36I	CCTNAGG	1 cut(s)	14
BsuI	GTATCC	1 cut(s)	1053
BsuRI	GGCC	5 cut(s)	382, 470, 704, 1222, 1259
BsuTUI	ATCGAT	1 cut(s)	787
BtgI	CCRYGG	2 cut(s)	1240, 1254
BtrI	CACGTC	1 cut(s)	778
BtsCI	GGATG	3 cut(s)	277, 304, 1095
BtsIMutI	CAGTG	2 cut(s)	266, 1036
Cac8I	GCNNGC	1 cut(s)	1247
CaiI	CAGNNNCTG	1 cut(s)	283
Cfr13I	GGNCC	2 cut(s)	468, 1221
ClaI	ATCGAT	1 cut(s)	787
CseI	GACGC	1 cut(s)	600
Csp6I	GTAC	3 cut(s)	877, 888, 1181
CviAII	CATG	6 cut(s)	127, 424, 451, 723, 1135, 1246
CviQI	GTAC	3 cut(s)	877, 888, 1181
DdeI	CTNAG	6 cut(s)	14, 318, 687, 851, 900, 934
DpnI	GATC	5 cut(s)	170, 180, 323, 786, 1187
DpnII	GATC	5 cut(s)	168, 178, 321, 784, 1185
DraI	TTTAAA	1 cut(s)	444
DrdI	GACNNNNNNGTC	1 cut(s)	1235
DriI	GACNNNNNGTC	1 cut(s)	453
DseDI	GACNNNNNNGTC	1 cut(s)	1235
EaeI	YGGCCR	1 cut(s)	1257
Eam1104I	CTCTTC	3 cut(s)	113, 221, 1167
Eam1105I	GACNNNNNGTC	1 cut(s)	453
EarI	CTCTTC	3 cut(s)	113, 221, 1167
Eco130I	CCWWGG	1 cut(s)	294
Eco147I	AGGCCT	1 cut(s)	382
Eco24I	GRGCYC	1 cut(s)	1162
Eco81I	CCTNAGG	1 cut(s)	14
EcoO109I	RGGNCCY	1 cut(s)	468
EcoRII	CCWGG	3 cut(s)	382, 402, 1191
EcoT14I	CCWWGG	1 cut(s)	294
EcoT38I	GRGCYC	1 cut(s)	1162
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	6 cut(s)	130, 427, 454, 726, 1138, 1249
FalI	AAGNNNNNCTT	2 cut(s)	719, 751
FaqI	GGGAC	1 cut(s)	52
FatI	CATG	6 cut(s)	126, 423, 450, 722, 1134, 1245
FbaI	TGATCA	1 cut(s)	178
Fnu4HI	GCNGC	6 cut(s)	67, 96, 348, 351, 638, 1220
FokI	GGATG	3 cut(s)	284, 311, 1102
FriOI	GRGCYC	1 cut(s)	1162
Fsp4HI	GCNGC	6 cut(s)	67, 96, 348, 351, 638, 1220
FspBI	CTAG	1 cut(s)	378
GluI	GCNGC	6 cut(s)	67, 96, 348, 351, 638, 1220
GsuI	CTGGAG	3 cut(s)	425, 957, 1175
HaeIII	GGCC	5 cut(s)	382, 470, 704, 1222, 1259
HapII	CCGG	1 cut(s)	929
HgaI	GACGC	1 cut(s)	600
Hin1II	CATG	6 cut(s)	130, 427, 454, 726, 1138, 1249
HinfI	GANTC	6 cut(s)	280, 287, 454, 486, 553, 932
HpaII	CCGG	1 cut(s)	929
HphI	GGTGA	5 cut(s)	163, 317, 323, 589, 649
Hpy166II	GTNNAC	3 cut(s)	580, 601, 877
Hpy188I	TCNGA	2 cut(s)	475, 810
Hpy188III	TCNNGA	5 cut(s)	8, 284, 760, 929, 936
Hpy8I	GTNNAC	3 cut(s)	580, 601, 877
Hpy99I	CGWCG	1 cut(s)	594
HpyAV	CCTTC	5 cut(s)	42, 43, 458, 794, 1024
HpyCH4III	ACNGT	3 cut(s)	733, 844, 887
HpyCH4IV	ACGT	4 cut(s)	603, 777, 864, 1236
HpyCH4V	TGCA	9 cut(s)	26, 98, 187, 427, 680, 726, 766, 896, 1049
HpyF10VI	GCNNNNNNNGC	5 cut(s)	347, 424, 643, 974, 1157
HpyF3I	CTNAG	6 cut(s)	14, 318, 687, 851, 900, 934
HpySE526I	ACGT	4 cut(s)	603, 777, 864, 1236
Hsp92II	CATG	6 cut(s)	130, 427, 454, 726, 1138, 1249
Kpn2I	TCCGGA	1 cut(s)	928
Ksp22I	TGATCA	1 cut(s)	178
Kzo9I	GATC	5 cut(s)	168, 178, 321, 784, 1185
LmnI	GCTCC	3 cut(s)	392, 1033, 1195
Lsp1109I	GCAGC	3 cut(s)	82, 334, 624
LweI	GCATC	3 cut(s)	265, 753, 931
MaeI	CTAG	1 cut(s)	378
MaeII	ACGT	4 cut(s)	603, 777, 864, 1236
MaeIII	GTNAC	4 cut(s)	655, 716, 1013, 1110
MalI	GATC	5 cut(s)	170, 180, 323, 786, 1187
MboI	GATC	5 cut(s)	168, 178, 321, 784, 1185
MboII	GAAGA	5 cut(s)	130, 238, 443, 1088, 1184
MfeI	CAATTG	1 cut(s)	520
MflI	RGATCY	1 cut(s)	1185
MhlI	GDGCHC	3 cut(s)	544, 1038, 1162
MluCI	AATT	6 cut(s)	508, 520, 627, 795, 1079, 1279
MluI	ACGCGT	1 cut(s)	592
MlyI	GAGTC	3 cut(s)	463, 547, 926
MroI	TCCGGA	1 cut(s)	928
MroXI	GAANNNNTTC	1 cut(s)	804
MseI	TTAA	4 cut(s)	443, 836, 1064, 1082
MspA1I	CMGCKG	1 cut(s)	575
MspI	CCGG	1 cut(s)	929
MspR9I	CCNGG	3 cut(s)	384, 404, 1193
MunI	CAATTG	1 cut(s)	520
MvaI	CCWGG	3 cut(s)	384, 404, 1193
MvnI	CGCG	2 cut(s)	353, 594
MwoI	GCNNNNNNNGC	5 cut(s)	347, 424, 643, 974, 1157
NdeII	GATC	5 cut(s)	168, 178, 321, 784, 1185
NlaIII	CATG	6 cut(s)	130, 427, 454, 726, 1138, 1249
NlaIV	GGNNCC	3 cut(s)	388, 469, 1187
NmuCI	GTSAC	2 cut(s)	655, 1110
NspI	RCATGY	2 cut(s)	130, 1249
PaeI	GCATGC	1 cut(s)	1249
PceI	AGGCCT	1 cut(s)	382
PcsI	WCGNNNNNNNCGW	1 cut(s)	870
PdmI	GAANNNNTTC	1 cut(s)	804
PfeI	GAWTC	3 cut(s)	280, 287, 486
PflMI	CCANNNNNTGG	1 cut(s)	1135
PfoI	TCCNGGA	1 cut(s)	1191
PkrI	GCNGC	6 cut(s)	68, 97, 349, 352, 639, 1221
PleI	GAGTC	3 cut(s)	462, 547, 926
PpsI	GAGTC	3 cut(s)	462, 547, 926
PsiI	TTATAA	1 cut(s)	626
Psp6I	CCWGG	3 cut(s)	382, 402, 1191
PspGI	CCWGG	3 cut(s)	382, 402, 1191
PspN4I	GGNNCC	3 cut(s)	388, 469, 1187
PspPI	GGNCC	2 cut(s)	468, 1221
PstNI	CAGNNNCTG	1 cut(s)	283
PsuI	RGATCY	1 cut(s)	1185
RsaI	GTAC	3 cut(s)	878, 889, 1182
RsaNI	GTAC	3 cut(s)	877, 888, 1181
SaqAI	TTAA	4 cut(s)	443, 836, 1064, 1082
SatI	GCNGC	6 cut(s)	67, 96, 348, 351, 638, 1220
Sau3AI	GATC	5 cut(s)	168, 178, 321, 784, 1185
Sau96I	GGNCC	2 cut(s)	468, 1221
SchI	GAGTC	3 cut(s)	463, 547, 926
ScrFI	CCNGG	3 cut(s)	384, 404, 1193
SduI	GDGCHC	3 cut(s)	544, 1038, 1162
SfaNI	GCATC	3 cut(s)	265, 753, 931
SfcI	CTRYAG	1 cut(s)	840
SphI	GCATGC	1 cut(s)	1249
Sse9I	AATT	6 cut(s)	508, 520, 627, 795, 1079, 1279
SseBI	AGGCCT	1 cut(s)	382
SsiI	CCGC	6 cut(s)	53, 66, 85, 351, 575, 1219
SspI	AATATT	1 cut(s)	670
SspMI	CTAG	1 cut(s)	378
StuI	AGGCCT	1 cut(s)	382
StyD4I	CCNGG	3 cut(s)	382, 402, 1191
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	3 cut(s)	733, 844, 887
TaiI	ACGT	4 cut(s)	606, 780, 867, 1239
TaqI	TCGA	2 cut(s)	589, 787
TasI	AATT	6 cut(s)	508, 520, 627, 795, 1079, 1279
TauI	GCSGC	3 cut(s)	69, 353, 1222
TfiI	GAWTC	3 cut(s)	280, 287, 486
Tru1I	TTAA	4 cut(s)	443, 836, 1064, 1082
Tru9I	TTAA	4 cut(s)	443, 836, 1064, 1082
TscAI	CASTG	2 cut(s)	273, 1043
TseFI	GTSAC	2 cut(s)	655, 1110
TseI	GCWGC	3 cut(s)	95, 347, 637
Tsp45I	GTSAC	2 cut(s)	655, 1110
TspDTI	ATGAA	7 cut(s)	239, 251, 412, 842, 1010, 1048, 1136
TspGWI	ACGGA	3 cut(s)	550, 1198, 1229
TspRI	CASTG	2 cut(s)	273, 1043
Van91I	CCANNNNNTGG	1 cut(s)	1135
XceI	RCATGY	2 cut(s)	130, 1249
XmnI	GAANNNNTTC	1 cut(s)	804
XspI	CTAG	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.