Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0018589

Physical Location & Seq

Genomic Coordinates Reverse (-)

58761710 .. 58763215

Gene Structure 1506 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G034190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGCCTCCTGACCTCAGGGCAAGTGCATTTCCTTCTAGGACAACTGGGAAGGCGGTTGGGAATGGCGGCTATGGTAGAAGTGGGCGGTTGATTGCTGCAAGTGGAGGGCTTGTGGAGAAGAGTGGCATGTTTTCAAAGCCACTTTCCAAGAAGTCAGGGGAGGTTGGGATCACAATCGATCACTTGCATAGGCTCAATCCAAAGAATGTGTCTGCTTGGAATATGAAGAGGCTAATGAATATAGTAAAATATGGGCATCTTACCATACTAGATGAGCAGATTCTGGATTCAACCAAGGATGAGGGTGAGGGTGATACTAAGATCAAAAGTGAAGTTGAGGCAAAGGTTGCCGCGAAAAAGATATTTCGCAATGTGGCTAGGCCTGGCTCCAAAGAACGGAGAGCACTTGCTTTGACTCTAACTGACACCAAAACAGCGGTGAACAGACTTCGACGCATGGTGGACGTATTAGTTAGCATTATTATTATAATTATATGGCTGCTTGTGCTGGATAAGAAGGAGCACTGGTATCCTGCACCAATGTTCATATTAAAGGAAGTGGAAGAATTAAATAGGATGAGGTTTGCCATATGGCTGTCACATAGAATGAACTTCCAAGACATGGGAGAAAAGTGGGCAAGGAGAGCCCGTTTACTTGAAGAGATGCTACGGATCCTCCAGGAGCTTGACATTGAGTATCGTTTGCGGCCCATTGACATAAATGTCCGTGGCATGCCTCCCACGGTCACCACTCTTCCTCCGTCTAATTTCACAGGAACCACAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008381 GO:0009506 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

262

Amino Acids

29.66

Weight (kDa)

10.05

Isoelectric Point (pI)

37.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018589)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0390441
rosa_multiflora	Rmu_co8155526.1_g000001 Rmu_sc0003071.1_g000008 Rmu_sc0009053.1_g000002
rosa_samantha	Rh4CG035500 Rh5AG363200 Rh6BG236100
rosa_wichuraiana	Rw5G034190 Rw5G034250 Rw6G020250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	488
AasI	GACNNNNNNGTC	1 cut(s)	722
AccB7I	CCANNNNNTGG	1 cut(s)	622
AccII	CGCG	1 cut(s)	353
AciI	CCGC	6 cut(s)	53, 66, 85, 351, 437, 706
AclWI	GGATC	3 cut(s)	176, 667, 680
AfiI	CCNNNNNNNGG	2 cut(s)	396, 622
AgsI	TTSAA	3 cut(s)	135, 291, 659
AjnI	CCWGG	2 cut(s)	382, 678
AluBI	AGCT	2 cut(s)	685, 786
AluI	AGCT	2 cut(s)	685, 786
Alw21I	GWGCWC	2 cut(s)	406, 525
AlwI	GGATC	3 cut(s)	176, 667, 680
AlwNI	CAGNNNCTG	1 cut(s)	283
AoxI	GGCC	2 cut(s)	380, 707
ApeKI	GCWGC	2 cut(s)	95, 499
ArsI	GACNNNNNNTTYG	2 cut(s)	194, 226
AspS9I	GGNCC	1 cut(s)	708
AsuHPI	GGTGA	4 cut(s)	317, 323, 451, 739
AxyI	CCTNAGG	1 cut(s)	14
BamHI	GGATCC	1 cut(s)	672
BanII	GRGCYC	1 cut(s)	649
BarI	GAAGNNNNNNTAC	2 cut(s)	651, 683
Bbv12I	GWGCWC	2 cut(s)	406, 525
BbvI	GCAGC	2 cut(s)	82, 486
BciT130I	CCWGG	2 cut(s)	384, 680
BciVI	GTATCC	1 cut(s)	540
BfaI	CTAG	3 cut(s)	36, 269, 378
BfuI	GTATCC	1 cut(s)	540
BisI	GCNGC	5 cut(s)	67, 96, 351, 500, 707
BlsI	GCNGC	5 cut(s)	68, 97, 352, 501, 708
Bme1390I	CCNGG	2 cut(s)	384, 680
BmgT120I	GGNCC	1 cut(s)	708
BmiI	GGNNCC	3 cut(s)	388, 674, 778
BmrFI	CCNGG	2 cut(s)	384, 680
BmrI	ACTGGG	1 cut(s)	54
BmsI	GCATC	2 cut(s)	265, 654
BmuI	ACTGGG	1 cut(s)	54
BpmI	CTGGAG	1 cut(s)	662
Bsa29I	ATCGAT	1 cut(s)	177
BsaBI	GATNNNNATC	1 cut(s)	173
BsaJI	CCNNGG	3 cut(s)	294, 727, 741
Bsc4I	CCNNNNNNNGG	2 cut(s)	396, 622
Bse1I	ACTGG	2 cut(s)	49, 530
Bse21I	CCTNAGG	1 cut(s)	14
Bse3DI	GCAATG	1 cut(s)	376
Bse8I	GATNNNNATC	1 cut(s)	173
BseBI	CCWGG	2 cut(s)	384, 680
BseCI	ATCGAT	1 cut(s)	177
BseDI	CCNNGG	3 cut(s)	294, 727, 741
BseGI	GGATG	2 cut(s)	304, 582
BseJI	GATNNNNATC	1 cut(s)	173
BseLI	CCNNNNNNNGG	2 cut(s)	396, 622
BseMI	GCAATG	1 cut(s)	376
BseMII	CTCAG	1 cut(s)	28
BseNI	ACTGG	2 cut(s)	49, 530
BseXI	GCAGC	2 cut(s)	82, 486
BsgI	GTGCAG	1 cut(s)	519
Bsh1236I	CGCG	1 cut(s)	353
BshFI	GGCC	2 cut(s)	382, 709
BshVI	ATCGAT	1 cut(s)	177
BsiHKAI	GWGCWC	2 cut(s)	406, 525
BslI	CCNNNNNNNGG	2 cut(s)	396, 622
BsnI	GGCC	2 cut(s)	382, 709
Bsp1286I	GDGCHC	3 cut(s)	406, 525, 649
Bsp143I	GATC	4 cut(s)	168, 178, 321, 672
BspACI	CCGC	6 cut(s)	53, 66, 85, 351, 437, 706
BspANI	GGCC	2 cut(s)	382, 709
BspCNI	CTCAG	1 cut(s)	27
BspDI	ATCGAT	1 cut(s)	177
BspFNI	CGCG	1 cut(s)	353
BspLI	GGNNCC	3 cut(s)	388, 674, 778
BspPI	GGATC	3 cut(s)	176, 667, 680
BsrDI	GCAATG	1 cut(s)	376
BsrI	ACTGG	2 cut(s)	49, 530
BssECI	CCNNGG	3 cut(s)	294, 727, 741
BssMI	GATC	4 cut(s)	168, 178, 321, 672
BssT1I	CCWWGG	1 cut(s)	294
Bst2UI	CCWGG	2 cut(s)	384, 680
Bst4CI	ACNGT	1 cut(s)	745
Bst6I	CTCTTC	4 cut(s)	113, 221, 654, 759
BstAPI	GCANNNNNTGC	1 cut(s)	347
BstC8I	GCNNGC	1 cut(s)	734
BstDEI	CTNAG	2 cut(s)	14, 318
BstDSI	CCRYGG	2 cut(s)	727, 741
BstEII	GGTNACC	1 cut(s)	745
BstF5I	GGATG	2 cut(s)	304, 582
BstFNI	CGCG	1 cut(s)	353
BstKTI	GATC	4 cut(s)	171, 181, 324, 675
BstMBI	GATC	4 cut(s)	168, 178, 321, 672
BstMWI	GCNNNNNNNGC	3 cut(s)	347, 505, 644
BstNI	CCWGG	2 cut(s)	384, 680
BstNSI	RCATGY	2 cut(s)	130, 736
BstPI	GGTNACC	1 cut(s)	745
BstSCI	CCNGG	2 cut(s)	382, 678
BstUI	CGCG	1 cut(s)	353
BstV1I	GCAGC	2 cut(s)	82, 486
BstX2I	RGATCY	1 cut(s)	672
BstYI	RGATCY	1 cut(s)	672
Bsu15I	ATCGAT	1 cut(s)	177
Bsu36I	CCTNAGG	1 cut(s)	14
BsuI	GTATCC	1 cut(s)	540
BsuRI	GGCC	2 cut(s)	382, 709
BsuTUI	ATCGAT	1 cut(s)	177
BtgI	CCRYGG	2 cut(s)	727, 741
BtsCI	GGATG	2 cut(s)	304, 582
BtsIMutI	CAGTG	1 cut(s)	523
Cac8I	GCNNGC	1 cut(s)	734
CaiI	CAGNNNCTG	1 cut(s)	283
Cfr13I	GGNCC	1 cut(s)	708
ClaI	ATCGAT	1 cut(s)	177
CseI	GACGC	1 cut(s)	462
CviAII	CATG	4 cut(s)	127, 457, 622, 733
DdeI	CTNAG	2 cut(s)	14, 318
DpnI	GATC	4 cut(s)	170, 180, 323, 674
DpnII	GATC	4 cut(s)	168, 178, 321, 672
DrdI	GACNNNNNNGTC	1 cut(s)	722
DseDI	GACNNNNNNGTC	1 cut(s)	722
Eam1104I	CTCTTC	4 cut(s)	113, 221, 654, 759
EarI	CTCTTC	4 cut(s)	113, 221, 654, 759
Eco130I	CCWWGG	1 cut(s)	294
Eco147I	AGGCCT	1 cut(s)	382
Eco24I	GRGCYC	1 cut(s)	649
Eco81I	CCTNAGG	1 cut(s)	14
Eco91I	GGTNACC	1 cut(s)	745
EcoO65I	GGTNACC	1 cut(s)	745
EcoRII	CCWGG	2 cut(s)	382, 678
EcoT14I	CCWWGG	1 cut(s)	294
EcoT38I	GRGCYC	1 cut(s)	649
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	4 cut(s)	130, 460, 625, 736
FatI	CATG	4 cut(s)	126, 456, 621, 732
FauNDI	CATATG	1 cut(s)	590
Fnu4HI	GCNGC	5 cut(s)	67, 96, 351, 500, 707
FokI	GGATG	2 cut(s)	311, 589
FriOI	GRGCYC	1 cut(s)	649
Fsp4HI	GCNGC	5 cut(s)	67, 96, 351, 500, 707
FspBI	CTAG	3 cut(s)	36, 269, 378
GluI	GCNGC	5 cut(s)	67, 96, 351, 500, 707
GsuI	CTGGAG	1 cut(s)	662
HaeIII	GGCC	2 cut(s)	382, 709
HgaI	GACGC	1 cut(s)	462
Hin1II	CATG	4 cut(s)	130, 460, 625, 736
HinfI	GANTC	3 cut(s)	280, 287, 415
HphI	GGTGA	4 cut(s)	317, 323, 451, 739
Hpy166II	GTNNAC	3 cut(s)	442, 463, 653
Hpy188III	TCNNGA	2 cut(s)	8, 284
Hpy8I	GTNNAC	3 cut(s)	442, 463, 653
Hpy99I	CGWCG	1 cut(s)	456
HpyAV	CCTTC	3 cut(s)	42, 43, 511
HpyCH4III	ACNGT	1 cut(s)	745
HpyCH4IV	ACGT	1 cut(s)	465
HpyCH4V	TGCA	4 cut(s)	26, 98, 187, 536
HpyF10VI	GCNNNNNNNGC	3 cut(s)	347, 505, 644
HpyF3I	CTNAG	2 cut(s)	14, 318
HpySE526I	ACGT	1 cut(s)	465
Hsp92II	CATG	4 cut(s)	130, 460, 625, 736
Kzo9I	GATC	4 cut(s)	168, 178, 321, 672
LmnI	GCTCC	3 cut(s)	392, 520, 682
Lsp1109I	GCAGC	2 cut(s)	82, 486
LweI	GCATC	2 cut(s)	265, 654
MaeI	CTAG	3 cut(s)	36, 269, 378
MaeII	ACGT	1 cut(s)	465
MaeIII	GTNAC	2 cut(s)	597, 745
MalI	GATC	4 cut(s)	170, 180, 323, 674
MboI	GATC	4 cut(s)	168, 178, 321, 672
MboII	GAAGA	5 cut(s)	130, 238, 575, 671, 746
MflI	RGATCY	1 cut(s)	672
MhlI	GDGCHC	3 cut(s)	406, 525, 649
MluCI	AATT	3 cut(s)	489, 566, 766
MlyI	GAGTC	1 cut(s)	409
MseI	TTAA	2 cut(s)	551, 569
MspA1I	CMGCKG	1 cut(s)	437
MspR9I	CCNGG	2 cut(s)	384, 680
MvaI	CCWGG	2 cut(s)	384, 680
MvnI	CGCG	1 cut(s)	353
MwoI	GCNNNNNNNGC	3 cut(s)	347, 505, 644
NdeI	CATATG	1 cut(s)	590
NdeII	GATC	4 cut(s)	168, 178, 321, 672
NlaIII	CATG	4 cut(s)	130, 460, 625, 736
NlaIV	GGNNCC	3 cut(s)	388, 674, 778
NmuCI	GTSAC	2 cut(s)	597, 745
NspI	RCATGY	2 cut(s)	130, 736
PaeI	GCATGC	1 cut(s)	736
PceI	AGGCCT	1 cut(s)	382
PfeI	GAWTC	2 cut(s)	280, 287
PflMI	CCANNNNNTGG	1 cut(s)	622
PfoI	TCCNGGA	1 cut(s)	678
PkrI	GCNGC	5 cut(s)	68, 97, 352, 501, 708
PleI	GAGTC	1 cut(s)	409
PpsI	GAGTC	1 cut(s)	409
PsiI	TTATAA	1 cut(s)	488
Psp6I	CCWGG	2 cut(s)	382, 678
PspEI	GGTNACC	1 cut(s)	745
PspGI	CCWGG	2 cut(s)	382, 678
PspN4I	GGNNCC	3 cut(s)	388, 674, 778
PspPI	GGNCC	1 cut(s)	708
PstNI	CAGNNNCTG	1 cut(s)	283
PsuI	RGATCY	1 cut(s)	672
SaqAI	TTAA	2 cut(s)	551, 569
SatI	GCNGC	5 cut(s)	67, 96, 351, 500, 707
Sau3AI	GATC	4 cut(s)	168, 178, 321, 672
Sau96I	GGNCC	1 cut(s)	708
SchI	GAGTC	1 cut(s)	409
ScrFI	CCNGG	2 cut(s)	384, 680
SduI	GDGCHC	3 cut(s)	406, 525, 649
SetI	ASST	7 cut(s)	15, 165, 348, 468, 584, 687, 788
SfaNI	GCATC	2 cut(s)	265, 654
SphI	GCATGC	1 cut(s)	736
Sse9I	AATT	3 cut(s)	489, 566, 766
SseBI	AGGCCT	1 cut(s)	382
SsiI	CCGC	6 cut(s)	53, 66, 85, 351, 437, 706
SspMI	CTAG	3 cut(s)	36, 269, 378
StuI	AGGCCT	1 cut(s)	382
StyD4I	CCNGG	2 cut(s)	382, 678
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	1 cut(s)	745
TaiI	ACGT	1 cut(s)	468
TaqI	TCGA	2 cut(s)	177, 451
TasI	AATT	3 cut(s)	489, 566, 766
TauI	GCSGC	3 cut(s)	69, 353, 709
TfiI	GAWTC	2 cut(s)	280, 287
Tru1I	TTAA	2 cut(s)	551, 569
Tru9I	TTAA	2 cut(s)	551, 569
TscAI	CASTG	1 cut(s)	530
TseFI	GTSAC	2 cut(s)	597, 745
TseI	GCWGC	2 cut(s)	95, 499
Tsp45I	GTSAC	2 cut(s)	597, 745
TspDTI	ATGAA	4 cut(s)	239, 251, 535, 623
TspGWI	ACGGA	4 cut(s)	412, 685, 716, 750
TspRI	CASTG	1 cut(s)	530
Van91I	CCANNNNNTGG	1 cut(s)	622
XceI	RCATGY	2 cut(s)	130, 736
XspI	CTAG	3 cut(s)	36, 269, 378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.