Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0018589

Physical Location & Seq

Genomic Coordinates Forward (+)

58928707 .. 58930211

Gene Structure 1505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G034250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGCCTCCTGACCTCAGGGCAAGTGCATTTCCTTCTGGGACAACTGGGAAGGCGGTTGGGAATGGCGGCTCTGGTAGAAGTGGGCGGCTCAAACCAAAGAATGTGTCTACTTGGAATATGAAGAGGCTAATGAATATAGTAAAATATGGGCATCTTACCACACTAGATGAGCAGATTCTGGATTCAACCAAGGATGAGGGTGAGGGTGATACTAAGATCAAAAGTGAAGTTGAGGCAAAGGCTGCCACGAAAAAGATATTTCGCAATGTGGCTAGGCCTGGCTCCAAAGAACGGGGAGCACTTGCTTTGACTCTAACTGACACCAAAACAGCGGTGAACAGACTTCGACGCGTGGTGGACTTATTAGTTAGCATTATTATTATAATTATATGGCTGCTTGTGCTGGATAAGAAGGAGCACTGGTATCCTGCACCAATGTTCATATTAAAGGAAGTGGAAGAATTAAATAGGATGAGGTTTGCCATATGGCTGTCACATAGAATGAACTTCCAAGACATGGGAGAAAAGTGGGCAATGAGAGCCCGTTTACTTGAAGAGATAGTACGGATCCTCCAGGAGCTTGACATTGAGTATCGTTTGCGGCCTATTGACATAAATGTCTGTGGCATGCCTCCCACGGCCACCACTCTTCCTCCCTCTAATTTCACAGCAACCACAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008381 GO:0009506 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

227

Amino Acids

25.63

Weight (kDa)

9.74

Isoelectric Point (pI)

35.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018589)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0390441
rosa_multiflora	Rmu_co8155526.1_g000001 Rmu_sc0003071.1_g000008 Rmu_sc0009053.1_g000002
rosa_samantha	Rh4CG035500 Rh5AG363200 Rh6BG236100
rosa_wichuraiana	Rw5G034190 Rw5G034250 Rw6G020250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	383
AasI	GACNNNNNNGTC	1 cut(s)	617
AccB7I	CCANNNNNTGG	1 cut(s)	517
AccI	GTMKAC	1 cut(s)	107
AccII	CGCG	1 cut(s)	351
AciI	CCGC	5 cut(s)	53, 66, 85, 332, 601
AclWI	GGATC	2 cut(s)	562, 575
AcoI	YGGCCR	1 cut(s)	639
AfaI	GTAC	1 cut(s)	564
AfiI	CCNNNNNNNGG	2 cut(s)	291, 517
AflIII	ACRYGT	1 cut(s)	349
AgsI	TTSAA	2 cut(s)	186, 554
AjnI	CCWGG	2 cut(s)	277, 573
AluBI	AGCT	2 cut(s)	580, 681
AluI	AGCT	2 cut(s)	580, 681
Alw21I	GWGCWC	2 cut(s)	301, 420
AlwI	GGATC	2 cut(s)	562, 575
AlwNI	CAGNNNCTG	1 cut(s)	178
AoxI	GGCC	3 cut(s)	275, 602, 639
ApeKI	GCWGC	2 cut(s)	242, 394
ArsI	GACNNNNNNTTYG	2 cut(s)	89, 121
AsuHPI	GGTGA	3 cut(s)	212, 218, 346
AxyI	CCTNAGG	1 cut(s)	14
BamHI	GGATCC	1 cut(s)	567
BanII	GRGCYC	1 cut(s)	544
BarI	GAAGNNNNNNTAC	2 cut(s)	546, 578
Bbv12I	GWGCWC	2 cut(s)	301, 420
BbvI	GCAGC	2 cut(s)	229, 381
BceAI	ACGGC	1 cut(s)	654
BciT130I	CCWGG	2 cut(s)	279, 575
BciVI	GTATCC	1 cut(s)	435
BfaI	CTAG	2 cut(s)	164, 273
BfuI	GTATCC	1 cut(s)	435
BisI	GCNGC	5 cut(s)	67, 86, 243, 395, 602
BlsI	GCNGC	5 cut(s)	68, 87, 244, 396, 603
Bme1390I	CCNGG	2 cut(s)	279, 575
BmiI	GGNNCC	2 cut(s)	283, 569
BmrFI	CCNGG	2 cut(s)	279, 575
BmrI	ACTGGG	1 cut(s)	54
BmsI	GCATC	1 cut(s)	160
BmuI	ACTGGG	1 cut(s)	54
BpmI	CTGGAG	1 cut(s)	557
BsaJI	CCNNGG	2 cut(s)	189, 636
BsaXI	ACNNNNNCTCC	6 cut(s)	407, 437, 555, 585, 637, 667
Bsc4I	CCNNNNNNNGG	2 cut(s)	291, 517
Bse1I	ACTGG	2 cut(s)	49, 425
Bse21I	CCTNAGG	1 cut(s)	14
Bse3DI	GCAATG	2 cut(s)	271, 540
BseBI	CCWGG	2 cut(s)	279, 575
BseDI	CCNNGG	2 cut(s)	189, 636
BseGI	GGATG	2 cut(s)	199, 477
BseLI	CCNNNNNNNGG	2 cut(s)	291, 517
BseMI	GCAATG	2 cut(s)	271, 540
BseMII	CTCAG	1 cut(s)	28
BseNI	ACTGG	2 cut(s)	49, 425
BseXI	GCAGC	2 cut(s)	229, 381
BsgI	GTGCAG	1 cut(s)	414
Bsh1236I	CGCG	1 cut(s)	351
BshFI	GGCC	3 cut(s)	277, 604, 641
BsiHKAI	GWGCWC	2 cut(s)	301, 420
BslFI	GGGAC	1 cut(s)	52
BslI	CCNNNNNNNGG	2 cut(s)	291, 517
BsmFI	GGGAC	1 cut(s)	52
BsnI	GGCC	3 cut(s)	277, 604, 641
Bsp1286I	GDGCHC	3 cut(s)	301, 420, 544
Bsp143I	GATC	2 cut(s)	216, 567
BspACI	CCGC	5 cut(s)	53, 66, 85, 332, 601
BspANI	GGCC	3 cut(s)	277, 604, 641
BspCNI	CTCAG	1 cut(s)	27
BspFNI	CGCG	1 cut(s)	351
BspLI	GGNNCC	2 cut(s)	283, 569
BspPI	GGATC	2 cut(s)	562, 575
BsrDI	GCAATG	2 cut(s)	271, 540
BsrI	ACTGG	2 cut(s)	49, 425
BssECI	CCNNGG	2 cut(s)	189, 636
BssMI	GATC	2 cut(s)	216, 567
BssT1I	CCWWGG	1 cut(s)	189
Bst2UI	CCWGG	2 cut(s)	279, 575
Bst6I	CTCTTC	3 cut(s)	116, 549, 654
BstAPI	GCANNNNNTGC	1 cut(s)	242
BstC8I	GCNNGC	1 cut(s)	629
BstDEI	CTNAG	2 cut(s)	14, 213
BstDSI	CCRYGG	1 cut(s)	636
BstF5I	GGATG	2 cut(s)	199, 477
BstFNI	CGCG	1 cut(s)	351
BstKTI	GATC	2 cut(s)	219, 570
BstMBI	GATC	2 cut(s)	216, 567
BstMWI	GCNNNNNNNGC	3 cut(s)	242, 400, 539
BstNI	CCWGG	2 cut(s)	279, 575
BstNSI	RCATGY	1 cut(s)	631
BstSCI	CCNGG	2 cut(s)	277, 573
BstUI	CGCG	1 cut(s)	351
BstV1I	GCAGC	2 cut(s)	229, 381
BstX2I	RGATCY	1 cut(s)	567
BstYI	RGATCY	1 cut(s)	567
Bsu36I	CCTNAGG	1 cut(s)	14
BsuI	GTATCC	1 cut(s)	435
BsuRI	GGCC	3 cut(s)	277, 604, 641
BtgI	CCRYGG	1 cut(s)	636
BtsCI	GGATG	2 cut(s)	199, 477
BtsIMutI	CAGTG	1 cut(s)	418
Cac8I	GCNNGC	1 cut(s)	629
CaiI	CAGNNNCTG	1 cut(s)	178
CseI	GACGC	1 cut(s)	357
Csp6I	GTAC	1 cut(s)	563
CviAII	CATG	2 cut(s)	517, 628
CviQI	GTAC	1 cut(s)	563
DdeI	CTNAG	2 cut(s)	14, 213
DpnI	GATC	2 cut(s)	218, 569
DpnII	GATC	2 cut(s)	216, 567
DrdI	GACNNNNNNGTC	1 cut(s)	617
DseDI	GACNNNNNNGTC	1 cut(s)	617
EaeI	YGGCCR	1 cut(s)	639
Eam1104I	CTCTTC	3 cut(s)	116, 549, 654
EarI	CTCTTC	3 cut(s)	116, 549, 654
Eco130I	CCWWGG	1 cut(s)	189
Eco147I	AGGCCT	1 cut(s)	277
Eco24I	GRGCYC	1 cut(s)	544
Eco81I	CCTNAGG	1 cut(s)	14
EcoRII	CCWGG	2 cut(s)	277, 573
EcoT14I	CCWWGG	1 cut(s)	189
EcoT38I	GRGCYC	1 cut(s)	544
ErhI	CCWWGG	1 cut(s)	189
FaeI	CATG	2 cut(s)	520, 631
FaqI	GGGAC	1 cut(s)	52
FatI	CATG	2 cut(s)	516, 627
FauNDI	CATATG	1 cut(s)	485
FblI	GTMKAC	1 cut(s)	107
Fnu4HI	GCNGC	5 cut(s)	67, 86, 243, 395, 602
FokI	GGATG	2 cut(s)	206, 484
FriOI	GRGCYC	1 cut(s)	544
Fsp4HI	GCNGC	5 cut(s)	67, 86, 243, 395, 602
FspBI	CTAG	2 cut(s)	164, 273
GluI	GCNGC	5 cut(s)	67, 86, 243, 395, 602
GsuI	CTGGAG	1 cut(s)	557
HaeIII	GGCC	3 cut(s)	277, 604, 641
HgaI	GACGC	1 cut(s)	357
Hin1II	CATG	2 cut(s)	520, 631
HinfI	GANTC	3 cut(s)	175, 182, 310
HphI	GGTGA	3 cut(s)	212, 218, 346
Hpy166II	GTNNAC	4 cut(s)	108, 337, 358, 548
Hpy188III	TCNNGA	2 cut(s)	8, 179
Hpy8I	GTNNAC	4 cut(s)	108, 337, 358, 548
Hpy99I	CGWCG	1 cut(s)	351
HpyAV	CCTTC	3 cut(s)	42, 43, 406
HpyCH4V	TGCA	2 cut(s)	26, 431
HpyF10VI	GCNNNNNNNGC	3 cut(s)	242, 400, 539
HpyF3I	CTNAG	2 cut(s)	14, 213
Hsp92II	CATG	2 cut(s)	520, 631
Kzo9I	GATC	2 cut(s)	216, 567
LmnI	GCTCC	4 cut(s)	287, 296, 415, 577
Lsp1109I	GCAGC	2 cut(s)	229, 381
LweI	GCATC	1 cut(s)	160
MaeI	CTAG	2 cut(s)	164, 273
MaeIII	GTNAC	1 cut(s)	492
MalI	GATC	2 cut(s)	218, 569
MboI	GATC	2 cut(s)	216, 567
MboII	GAAGA	4 cut(s)	133, 470, 566, 641
MflI	RGATCY	1 cut(s)	567
MhlI	GDGCHC	3 cut(s)	301, 420, 544
MluCI	AATT	3 cut(s)	384, 461, 661
MluI	ACGCGT	1 cut(s)	349
MlyI	GAGTC	1 cut(s)	304
MseI	TTAA	2 cut(s)	446, 464
MspA1I	CMGCKG	1 cut(s)	332
MspR9I	CCNGG	2 cut(s)	279, 575
MvaI	CCWGG	2 cut(s)	279, 575
MvnI	CGCG	1 cut(s)	351
MwoI	GCNNNNNNNGC	3 cut(s)	242, 400, 539
NdeI	CATATG	1 cut(s)	485
NdeII	GATC	2 cut(s)	216, 567
NlaIII	CATG	2 cut(s)	520, 631
NlaIV	GGNNCC	2 cut(s)	283, 569
NmuCI	GTSAC	1 cut(s)	492
NspI	RCATGY	1 cut(s)	631
PaeI	GCATGC	1 cut(s)	631
PceI	AGGCCT	1 cut(s)	277
PfeI	GAWTC	2 cut(s)	175, 182
PflMI	CCANNNNNTGG	1 cut(s)	517
PfoI	TCCNGGA	1 cut(s)	573
PkrI	GCNGC	5 cut(s)	68, 87, 244, 396, 603
PleI	GAGTC	1 cut(s)	304
PpsI	GAGTC	1 cut(s)	304
PsiI	TTATAA	1 cut(s)	383
Psp6I	CCWGG	2 cut(s)	277, 573
PspGI	CCWGG	2 cut(s)	277, 573
PspN4I	GGNNCC	2 cut(s)	283, 569
PstNI	CAGNNNCTG	1 cut(s)	178
PsuI	RGATCY	1 cut(s)	567
RsaI	GTAC	1 cut(s)	564
RsaNI	GTAC	1 cut(s)	563
SaqAI	TTAA	2 cut(s)	446, 464
SatI	GCNGC	5 cut(s)	67, 86, 243, 395, 602
Sau3AI	GATC	2 cut(s)	216, 567
SchI	GAGTC	1 cut(s)	304
ScrFI	CCNGG	2 cut(s)	279, 575
SduI	GDGCHC	3 cut(s)	301, 420, 544
SetI	ASST	4 cut(s)	15, 479, 582, 683
SfaNI	GCATC	1 cut(s)	160
SphI	GCATGC	1 cut(s)	631
Sse9I	AATT	3 cut(s)	384, 461, 661
SseBI	AGGCCT	1 cut(s)	277
SsiI	CCGC	5 cut(s)	53, 66, 85, 332, 601
SspMI	CTAG	2 cut(s)	164, 273
StuI	AGGCCT	1 cut(s)	277
StyD4I	CCNGG	2 cut(s)	277, 573
StyI	CCWWGG	1 cut(s)	189
TaqI	TCGA	1 cut(s)	346
TasI	AATT	3 cut(s)	384, 461, 661
TauI	GCSGC	3 cut(s)	69, 88, 604
TfiI	GAWTC	2 cut(s)	175, 182
Tru1I	TTAA	2 cut(s)	446, 464
Tru9I	TTAA	2 cut(s)	446, 464
TscAI	CASTG	1 cut(s)	425
TseFI	GTSAC	1 cut(s)	492
TseI	GCWGC	2 cut(s)	242, 394
Tsp45I	GTSAC	1 cut(s)	492
TspDTI	ATGAA	4 cut(s)	134, 146, 430, 518
TspGWI	ACGGA	1 cut(s)	580
TspRI	CASTG	1 cut(s)	425
Van91I	CCANNNNNTGG	1 cut(s)	517
XceI	RCATGY	1 cut(s)	631
XmiI	GTMKAC	1 cut(s)	107
XspI	CTAG	2 cut(s)	164, 273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.