Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003116.1

Orthogroup ID

OG0010880

Physical Location & Seq

Genomic Coordinates Forward (+)

98791 .. 111362

Gene Structure 12572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3876 bp

atggctgttccggttgaagaagccattgctgcgctatctacattctcactggaggatgagcaagcagaggttcaaggaccaggagtttgggtttcgactgacaccggagcaactgacagtccaattgagtatagcgatgtttctgcatatcgcttgtctttatctgaagacacaaaagctctcaatcaactgaatgctcttatactcgagggaaaggagatgggatctgtgctgtatacatatcgtagttgtgtcaaggcacttcctcagcttcctgattctatgaaacaaaatcaagctgacttgtaccttgaaacttatcaagttctggacttggaaatgagtcgcctacgtgaaatacagcgctggcaagcttcggctgcatcaaagctagctgcagatatgcaacgcttctcaaggcccgagagacgcattaatggacctacagtaactcatctctggtccatgttgaagttacttgacactttggtgcaacttgatcatcttaaaaatgcaaaggcaagcataccaaatgatttctcttggtataaaaggacattcacacaagtaagtgtacagtggcatgatactgattcaatgagagaggagttggatgacttacagattttccttagcacaaggtgggccatcttgttgaatttgcatgctgagatgttccgtgtgaacaacgtagaagatattcttcaagtactcatagtttttgctgtcgagtcactagagctggattttgcacttctgttcccagagcggcacattcttcttcgtgttctgccgattctagttgtcttagctacatcgtcagaaaaagatagcgagtctttgtacaagagagtgaaaatcaacagacttattaacatattcaagaatgatccagtaattcctgcatttccagatctccatctttctcctgctgcaatcatgaaagaattgtcaatgtacttccaaaagttttctgcccaaactcgtcttctcagccttccatcacctcatgagcttccagcccgtaacctttccggtgagaccttgacttcatttacttatcagaggcattatctaatcatcaatcatattggatccatccgtgccgaacatgatgacttcacaattcgttttgcttcctccatgaatcagctattgttgttgaagtcaacagatagtgccgacattgagtggtgcaaagaagtcaagggaaatatatatgatatgattgttgaaggttttcagcttttaagtagatggactgcacgcatttgggaacaatgtgcatggaaattttctcgtccctgcaaggatatagttccctccgaatcacaagaggcttcagcatcattttctgactatgaaaaggtggtacgttataactatagtgcggaggaaaggaaagcgctggtggaacttgttagctacataaagagcataggatctatgatgcagtctagtgacacattggtagctgatgctttatgggagacaatacatgccgaggttcaagattttgttcagaatacattggccactatgttgcgtactacctttcgaaagaagaaggacctttctaggatcctttccgatatgcggactctttcagcagactggatggcaaatacaagtaaatctgaatctggaccccttcagcatggaagtgaagaaagcaaaggaaatgttttttatccaaggccagttgcaccaacagccgctcaggtgcactgcttgcagttcctgatatatgaagttgtttccggtggtaaccttaggaagcctggagggctctttgggaatagtggttctgagatccctgttaatgacctaaaacagttagaaacatttttttacaagcttagcttcttcctgcatattctggactattcagcgactgtcgcaatgttgacggatcttggtttcttatggtttagagaattttatttggagtcttctcgtgttattcagtttccgatcgaatgctctcttccttggatgttggtggattatgtgcttgagtcacataatgccggtattctagagagtgttttgataccatttgacatctataacgattctgctcagcaagcattggttgtgctcaagcaacggttcctctatgatgaaattgaggctgaggtggatcattgtttcgacatttttgtttcaaaactctgtgatacaattttcacatattacaagagctgggcagcaagcaagctacttgatacgtcattccttttcgcattggacaatggagaaagatactctgtcgagcctatgaggttcacaacactgctaaagatgaccagagtgaagttgcttggaaggatgattgatttaaggagtttgattactgagcggatgaacaaagttttcagagataatattgagtttctatatgatcgttttgagtctcaagatctatgtgctattgtggaactagaaaatctgctggatatcttaaagcatgcccatgaattgctctccagagatctttcaatagactcattcagtctaatgttgaatgagatgcaagaaaatatatcactggtgtcatattctagtagacttgcctctcagatttggtcagagatgcagaatgatttcttgccaaacttcatcctttgcaatactacccagcgttttacacgatcagcaaaggttcctcttgttcctgttcaaaagccatcagttccctacgccaagcctaatttctattgtggtactcaagatttaaatgcagctcatcaaagttttgcaaggttgcacagtggattttttggaatgcctcacatgttttccattgtaaggcttctagggtccagatcattgccctggctaatccgagcacttctagatcatatatctaacaagacagctaccctggaacccttgataacaggattgcaagaagcattgccaaaatctattggactgcttccttttgatggaggcgtgacaggttgtatgaggcttgttaaggaacagcttacttggggaaccaaatcagagctcaaaggagaagttcttcggggtataaaggagattggaagcgtattatattggctggggcttcttgatatcgtattgagagaaacagacaccacacatttcatgcaaacatccccttggttgggcttgcttcctgctgcagatggacaaatattacattctcaagatggtggagaaagccctattgtcaacctttttaaatcagctacttctgctattgtgtcaaaccctgggtgtccaaatccagcttccttcaataccttatcgaagcaggcagaagctgcagatcttttgtacaaggctaacatgaacacgggaagcgtgctggaatattctctagcttttactagtgcagcactggataaatactgtagtaaatggagtgctgttcccaaaacagggtttattgatatcacaacttcaaaggatttctatcgtatatacagtggccttcaaatttggtatctagaggagtctgttcgagtattgccaaacaatcaagaagtgctgggtgattctgtagcttggggtggttgcaccataatctacttgcttgggcaacagctgcatttcgagctcttggatttttcatatcaggtcctcaatgttgctgaagtggaggttgcatcaattacccaaacccataagagccctcattatgttcagggatgggatggcctgttagaagtaatgaagaaagcaaggaggttgaacaaccatgtgttctccatgttaaaggcgcgttgccctcttgaagataaaacagcttgtgccatcaagcaaagtggtgcccctctgcaccggatcaagtttgagaacaccgtctctgcatttgaaacactgccacagaaagaggcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010638 GO:0016043 GO:0030029 GO:0030036 GO:0030154 GO:0030832 GO:0030833 GO:0030838 GO:0031209 GO:0031334 GO:0032271 GO:0032273 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0032991 GO:0033043 GO:0043254 GO:0044087 GO:0044089 GO:0044424 GO:0044444 GO:0044464 GO:0045010 GO:0048468 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090558 GO:0090626 GO:0097435 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko03013 ko04810 map03013 map04810

Pfam Domains

Protein Families

DUF1394 FragX_IP

Protein Analysis

1291

Amino Acids

146.5

Weight (kDa)

5.56

Isoelectric Point (pI)

43.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FragX_IP	PF05994	357 - 1252	0.0	Cytoplasmic Fragile-X interacting family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010880)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18410 AT5G18410 AT5G18410
fragaria_vesca	FvH4_6g01330 FvH4_6g01330 FvH4_6g01330
malus_domestica	MD12G1252900.v1.1
prunus_persica	Prupe.6G354800_v2.0.a1
pyrus_communis	pycom12g23200
rosa_chinensis	RchiOBHm_Chr3g0448901
rosa_laevigata	RLG00000025868
rosa_multiflora	Rmu_sc0003116.1_g000019
rosa_roxburghii	Rroxscaffold_6G00427090
rosa_rugosa	Rorug02G0617100 Rorug02G0617100
rosa_samantha	Rh3AG015400 Rh3BG015200 Rh3CG014100 Rh3DG015700
rosa_wichuraiana	Rw3G001140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1380
AccB1I	GGYRCC	1 cut(s)	3803
AccBSI	CCGCTC	3 cut(s)	769, 1718, 2362
AccI	GTMKAC	2 cut(s)	236, 2569
AccII	CGCG	1 cut(s)	3757
AciI	CCGC	5 cut(s)	769, 1391, 1597, 1716, 2362
AcoI	YGGCCR	1 cut(s)	1533
AcsI	RAATTY	4 cut(s)	658, 1292, 1937, 3471
AcuI	CTGAAG	4 cut(s)	186, 1326, 1637, 3648
AdeI	CACNNNGTG	1 cut(s)	642
AfaI	GTAC	9 cut(s)	308, 576, 711, 845, 959, 1374, 1549, 2728, 3311
AfeI	AGCGCT	2 cut(s)	365, 1407
AfiI	CCNNNNNNNGG	7 cut(s)	1596, 2811, 2951, 3136, 3137, 3413, 3414
AflIII	ACRYGT	1 cut(s)	2796
AhlI	ACTAGT	1 cut(s)	3362
AjnI	CCWGG	5 cut(s)	79, 1780, 2837, 2886, 3244
AjuI	GAANNNNNNNTTGG	6 cut(s)	972, 1004, 2699, 2731, 3247, 3279
AleI	CACNNNNGTG	1 cut(s)	488
AloI	GAACNNNNNNTCC	2 cut(s)	1789, 1821
Alw21I	GWGCWC	5 cut(s)	1728, 2103, 2854, 3018, 3594
Alw26I	GTCTC	5 cut(s)	421, 1034, 1484, 2421, 3844
Alw44I	GTGCAC	1 cut(s)	1724
AlwNI	CAGNNNCTG	3 cut(s)	1741, 1895, 3296
Ama87I	CYCGRG	2 cut(s)	206, 422
Aor51HI	AGCGCT	2 cut(s)	365, 1407
AoxI	GGCC	7 cut(s)	419, 645, 1533, 1697, 3463, 3691, 3870
ApaLI	GTGCAC	1 cut(s)	1724
ApoI	RAATTY	4 cut(s)	658, 1292, 1937, 3471
ArsI	GACNNNNNNTTYG	2 cut(s)	69, 101
AseI	ATTAAT	1 cut(s)	435
Asp700I	GAANNNNTTC	4 cut(s)	699, 1239, 2606, 3030
AspLEI	GCGC	4 cut(s)	34, 366, 1408, 3757
AspS9I	GGNCC	9 cut(s)	77, 420, 440, 462, 645, 1570, 1646, 2823, 3613
AsuHPI	GGTGA	3 cut(s)	996, 1049, 3539
AsuII	TTCGAA	1 cut(s)	1558
AsuNHI	GCTAGC	1 cut(s)	391
AvaI	CYCGRG	2 cut(s)	206, 422
AvaII	GGWCC	7 cut(s)	77, 440, 462, 1570, 1646, 2823, 3613
AxyI	CCTNAGG	1 cut(s)	1772
BaeGI	GKGCMC	2 cut(s)	1728, 3808
BalI	TGGCCA	1 cut(s)	1535
BamHI	GGATCC	2 cut(s)	1094, 1581
BanI	GGYRCC	1 cut(s)	3803
BanII	GRGCYC	4 cut(s)	1791, 3018, 3594, 3668
BauI	CACGAG	1 cut(s)	1956
BbsI	GAAGAC	3 cut(s)	174, 980, 1944
Bbv12I	GWGCWC	5 cut(s)	1728, 2103, 2854, 3018, 3594
BbvCI	CCTCAGC	2 cut(s)	267, 2136
BcgI	CGANNNNNNTGC	2 cut(s)	125, 159
BciT130I	CCWGG	5 cut(s)	81, 1782, 2839, 2888, 3246
BclI	TGATCA	1 cut(s)	499
BcoDI	GTCTC	5 cut(s)	421, 1034, 1484, 2421, 3844
BcuI	ACTAGT	1 cut(s)	3362
BfmI	CTRYAG	7 cut(s)	396, 444, 1384, 3153, 3297, 3385, 3534
BfoI	RGCGCY	2 cut(s)	367, 1409
BglI	GCCNNNNNGGC	1 cut(s)	1786
BglII	AGATCT	4 cut(s)	913, 2422, 2494, 3301
BlpI	GCTNAGC	2 cut(s)	1859, 2082
BmcAI	AGTACT	1 cut(s)	711
Bme1390I	CCNGG	5 cut(s)	81, 1782, 2839, 2888, 3246
Bme18I	GGWCC	7 cut(s)	77, 440, 462, 1570, 1646, 2823, 3613
BmeT110I	CYCGRG	2 cut(s)	206, 422
BmgT120I	GGNCC	9 cut(s)	77, 420, 440, 462, 645, 1570, 1646, 2823, 3613
BmiI	GGNNCC	9 cut(s)	1096, 1583, 1648, 2114, 2667, 2824, 2892, 3004, 3805
BmrFI	CCNGG	5 cut(s)	81, 1782, 2839, 2888, 3246
BmsI	GCATC	7 cut(s)	392, 1355, 1440, 1468, 2523, 2586, 3650
BmtI	GCTAGC	1 cut(s)	395
BpiI	GAAGAC	3 cut(s)	174, 980, 1944
BpmI	CTGGAG	3 cut(s)	71, 1803, 2473
Bpu10I	CCTNAGC	4 cut(s)	267, 632, 1719, 2136
Bpu1102I	GCTNAGC	2 cut(s)	1859, 2082
Bpu14I	TTCGAA	1 cut(s)	1558
BpuEI	CTTGAG	6 cut(s)	400, 2036, 2087, 2403, 2715, 3162
BsaAI	YACGTR	1 cut(s)	353
BsaBI	GATNNNNATC	2 cut(s)	918, 3447
BsaI	GGTCTC	1 cut(s)	1034
BsaJI	CCNNGG	8 cut(s)	1503, 1694, 1991, 2837, 2886, 3131, 3244, 3245
BsaWI	WCCGGW	5 cut(s)	10, 104, 1034, 1760, 3816
BsaXI	ACNNNNNCTCC	2 cut(s)	75, 105
Bsc4I	CCNNNNNNNGG	7 cut(s)	1596, 2811, 2951, 3136, 3137, 3413, 3414
Bse118I	RCCGGY	1 cut(s)	2030
Bse1I	ACTGG	6 cut(s)	54, 893, 1619, 1700, 2556, 3378
Bse21I	CCTNAGG	1 cut(s)	1772
Bse3DI	GCAATG	4 cut(s)	24, 1908, 2831, 2918
Bse8I	GATNNNNATC	2 cut(s)	918, 3447
BseBI	CCWGG	5 cut(s)	81, 1782, 2839, 2888, 3246
BseDI	CCNNGG	8 cut(s)	1503, 1694, 1991, 2837, 2886, 3131, 3244, 3245
BseJI	GATNNNNATC	2 cut(s)	918, 3447
BseLI	CCNNNNNNNGG	7 cut(s)	1596, 2811, 2951, 3136, 3137, 3413, 3414
BseMI	GCAATG	4 cut(s)	24, 1908, 2831, 2918
BseMII	CTCAG	9 cut(s)	281, 660, 1006, 1733, 1800, 2096, 2127, 2349, 2594
BseNI	ACTGG	6 cut(s)	54, 893, 1619, 1700, 2556, 3378
BseRI	GAGGAG	2 cut(s)	620, 3500
BseSI	GKGCMC	2 cut(s)	1728, 3808
BseYI	CCCAGC	4 cut(s)	2205, 2640, 3070, 3523
BsgI	GTGCAG	3 cut(s)	1248, 3387, 3797
Bsh1236I	CGCG	1 cut(s)	3757
Bsh1285I	CGRYCG	1 cut(s)	1977
BshFI	GGCC	7 cut(s)	421, 647, 1535, 1699, 3465, 3693, 3872
BshNI	GGYRCC	1 cut(s)	3803
BsiEI	CGRYCG	1 cut(s)	1977
BsiHKAI	GWGCWC	5 cut(s)	1728, 2103, 2854, 3018, 3594
BsiHKCI	CYCGRG	2 cut(s)	206, 422
BsiSI	CCGG	6 cut(s)	11, 105, 1035, 1761, 2031, 3817
BslFI	GGGAC	1 cut(s)	1287
BslI	CCNNNNNNNGG	7 cut(s)	1596, 2811, 2951, 3136, 3137, 3413, 3414
BsmAI	GTCTC	5 cut(s)	421, 1034, 1484, 2421, 3844
BsmBI	CGTCTC	2 cut(s)	421, 3844
BsmFI	GGGAC	1 cut(s)	1287
BsmI	GAATGC	3 cut(s)	199, 1985, 2793
BsnI	GGCC	7 cut(s)	421, 647, 1535, 1699, 3465, 3693, 3872
Bso31I	GGTCTC	1 cut(s)	1034
BsoBI	CYCGRG	2 cut(s)	206, 422
Bsp119I	TTCGAA	1 cut(s)	1558
Bsp1286I	GDGCHC	8 cut(s)	1728, 1791, 2103, 2854, 3018, 3594, 3668, 3808
Bsp1407I	TGTACA	3 cut(s)	574, 843, 3309
Bsp1720I	GCTNAGC	2 cut(s)	1859, 2082
BspACI	CCGC	5 cut(s)	769, 1391, 1597, 1716, 2362
BspANI	GGCC	7 cut(s)	421, 647, 1535, 1699, 3465, 3693, 3872
BspCNI	CTCAG	9 cut(s)	280, 661, 1005, 1732, 1801, 2095, 2128, 2350, 2593
BspFNI	CGCG	1 cut(s)	3757
BspHI	TCATGA	2 cut(s)	939, 1009
BspLI	GGNNCC	9 cut(s)	1096, 1583, 1648, 2114, 2667, 2824, 2892, 3004, 3805
BspMAI	CTGCAG	3 cut(s)	400, 3157, 3301
BspOI	GCTAGC	1 cut(s)	395
BspT104I	TTCGAA	1 cut(s)	1558
BspT107I	GGYRCC	1 cut(s)	3803
BspTNI	GGTCTC	1 cut(s)	1034
BsrBI	CCGCTC	3 cut(s)	769, 1718, 2362
BsrDI	GCAATG	4 cut(s)	24, 1908, 2831, 2918
BsrFI	RCCGGY	1 cut(s)	2030
BsrGI	TGTACA	3 cut(s)	574, 843, 3309
BsrI	ACTGG	6 cut(s)	54, 893, 1619, 1700, 2556, 3378
BssAI	RCCGGY	1 cut(s)	2030
BssECI	CCNNGG	8 cut(s)	1503, 1694, 1991, 2837, 2886, 3131, 3244, 3245
BssNAI	GTATAC	1 cut(s)	237
BssSI	CACGAG	1 cut(s)	1956
BssT1I	CCWWGG	3 cut(s)	1694, 1991, 3131
Bst1107I	GTATAC	1 cut(s)	237
Bst2BI	CACGAG	1 cut(s)	1956
Bst2UI	CCWGG	5 cut(s)	81, 1782, 2839, 2888, 3246
Bst6I	CTCTTC	1 cut(s)	1992
BstAPI	GCANNNNNTGC	3 cut(s)	1732, 3296, 3580
BstAUI	TGTACA	3 cut(s)	574, 843, 3309
BstBAI	YACGTR	1 cut(s)	353
BstBI	TTCGAA	1 cut(s)	1558
BstEII	GGTNACC	1 cut(s)	1766
BstFNI	CGCG	1 cut(s)	3757
BstH2I	RGCGCY	2 cut(s)	367, 1409
BstHHI	GCGC	4 cut(s)	34, 366, 1408, 3757
BstMAI	GTCTC	5 cut(s)	421, 1034, 1484, 2421, 3844
BstMCI	CGRYCG	1 cut(s)	1977
BstNI	CCWGG	5 cut(s)	81, 1782, 2839, 2888, 3246
BstNSI	RCATGY	4 cut(s)	668, 1502, 2474, 2800
BstPI	GGTNACC	1 cut(s)	1766
BstSCI	CCNGG	5 cut(s)	79, 1780, 2837, 2886, 3244
BstSFI	CTRYAG	7 cut(s)	396, 444, 1384, 3153, 3297, 3385, 3534
BstSLI	GKGCMC	2 cut(s)	1728, 3808
BstUI	CGCG	1 cut(s)	3757
BstV2I	GAAGAC	3 cut(s)	174, 980, 1944
BstXI	CCANNNNNNTGG	1 cut(s)	87
BstZ17I	GTATAC	1 cut(s)	237
Bsu36I	CCTNAGG	1 cut(s)	1772
BsuRI	GGCC	7 cut(s)	421, 647, 1535, 1699, 3465, 3693, 3872
BtgZI	GCGATG	1 cut(s)	150
BtsI	GCAGTG	3 cut(s)	1726, 2294, 3854
BtsIMutI	CAGTG	9 cut(s)	47, 584, 1726, 2294, 2549, 2779, 3371, 3466, 3854
CaiI	CAGNNNCTG	3 cut(s)	1741, 1895, 3296
CciI	TCATGA	2 cut(s)	939, 1009
CfoI	GCGC	4 cut(s)	34, 366, 1408, 3757
Cfr10I	RCCGGY	1 cut(s)	2030
Cfr13I	GGNCC	9 cut(s)	77, 420, 440, 462, 645, 1570, 1646, 2823, 3613
CseI	GACGC	1 cut(s)	438
Csp6I	GTAC	9 cut(s)	307, 575, 710, 844, 958, 1373, 1548, 2727, 3310
CspCI	CAANNNNNGTGG	2 cut(s)	3781, 3816
CviQI	GTAC	9 cut(s)	307, 575, 710, 844, 958, 1373, 1548, 2727, 3310
DraI	TTTAAA	2 cut(s)	2739, 3214
DraIII	CACNNNGTG	1 cut(s)	642
EaeI	YGGCCR	1 cut(s)	1533
Eam1104I	CTCTTC	1 cut(s)	1992
EarI	CTCTTC	1 cut(s)	1992
Ecl136II	GAGCTC	2 cut(s)	3016, 3592
Eco130I	CCWWGG	3 cut(s)	1694, 1991, 3131
Eco147I	AGGCCT	1 cut(s)	3872
Eco24I	GRGCYC	4 cut(s)	1791, 3018, 3594, 3668
Eco31I	GGTCTC	1 cut(s)	1034
Eco32I	GATATC	3 cut(s)	2461, 3085, 3427
Eco47I	GGWCC	7 cut(s)	77, 440, 462, 1570, 1646, 2823, 3613
Eco47III	AGCGCT	2 cut(s)	365, 1407
Eco53kI	GAGCTC	2 cut(s)	3016, 3592
Eco57I	CTGAAG	4 cut(s)	186, 1326, 1637, 3648
Eco81I	CCTNAGG	1 cut(s)	1772
Eco88I	CYCGRG	2 cut(s)	206, 422
Eco91I	GGTNACC	1 cut(s)	1766
EcoICRI	GAGCTC	2 cut(s)	3016, 3592
EcoO109I	RGGNCCY	2 cut(s)	1570, 3613
EcoO65I	GGTNACC	1 cut(s)	1766
EcoRII	CCWGG	5 cut(s)	79, 1780, 2837, 2886, 3244
EcoRV	GATATC	3 cut(s)	2461, 3085, 3427
EcoT14I	CCWWGG	3 cut(s)	1694, 1991, 3131
EcoT38I	GRGCYC	4 cut(s)	1791, 3018, 3594, 3668
ErhI	CCWWGG	3 cut(s)	1694, 1991, 3131
Esp3I	CGTCTC	2 cut(s)	421, 3844
FalI	AAGNNNNNCTT	4 cut(s)	687, 719, 1847, 1879
FaqI	GGGAC	1 cut(s)	1287
FbaI	TGATCA	1 cut(s)	499
FblI	GTMKAC	2 cut(s)	236, 2569
FriOI	GRGCYC	4 cut(s)	1791, 3018, 3594, 3668
GlaI	GCGC	4 cut(s)	33, 365, 1407, 3756
GsaI	CCCAGC	4 cut(s)	2209, 2644, 3074, 3527
GsuI	CTGGAG	3 cut(s)	71, 1803, 2473
HaeII	RGCGCY	2 cut(s)	367, 1409
HaeIII	GGCC	7 cut(s)	421, 647, 1535, 1699, 3465, 3693, 3872
HapII	CCGG	6 cut(s)	11, 105, 1035, 1761, 2031, 3817
HgaI	GACGC	1 cut(s)	438
HhaI	GCGC	4 cut(s)	34, 366, 1408, 3757
Hin6I	GCGC	4 cut(s)	32, 364, 1406, 3755
HinP1I	GCGC	4 cut(s)	32, 364, 1406, 3755
HincII	GTYRAC	3 cut(s)	1170, 1908, 3205
HindII	GTYRAC	3 cut(s)	1170, 1908, 3205
HindIII	AAGCTT	2 cut(s)	372, 1856
HpaII	CCGG	6 cut(s)	11, 105, 1035, 1761, 2031, 3817
HphI	GGTGA	3 cut(s)	996, 1049, 3539
Hpy166II	GTNNAC	9 cut(s)	237, 575, 685, 1170, 1726, 1908, 2289, 2570, 3205
Hpy8I	GTNNAC	9 cut(s)	237, 575, 685, 1170, 1726, 1908, 2289, 2570, 3205
HpyAV	CCTTC	7 cut(s)	1007, 1229, 1561, 1661, 2322, 3277, 3476
HpyCH4IV	ACGT	4 cut(s)	352, 690, 1375, 2231
HpySE526I	ACGT	4 cut(s)	352, 690, 1375, 2231
HspAI	GCGC	4 cut(s)	32, 364, 1406, 3755
Ksp22I	TGATCA	1 cut(s)	499
LmnI	GCTCC	1 cut(s)	107
LweI	GCATC	7 cut(s)	392, 1355, 1440, 1468, 2523, 2586, 3650
MaeII	ACGT	4 cut(s)	352, 690, 1375, 2231
MaeIII	GTNAC	8 cut(s)	448, 474, 732, 1025, 1460, 1766, 2019, 2959
MbiI	CCGCTC	3 cut(s)	769, 1718, 2362
MfeI	CAATTG	1 cut(s)	123
MhlI	GDGCHC	8 cut(s)	1728, 1791, 2103, 2854, 3018, 3594, 3668, 3808
MlsI	TGGCCA	1 cut(s)	1535
MluNI	TGGCCA	1 cut(s)	1535
MlyI	GAGTC	9 cut(s)	352, 740, 845, 1594, 1958, 2027, 2423, 2501, 3497
MmeI	TCCRAC	1 cut(s)	591
Mox20I	TGGCCA	1 cut(s)	1535
MroXI	GAANNNNTTC	4 cut(s)	699, 1239, 2606, 3030
MscI	TGGCCA	1 cut(s)	1535
MslI	CAYNNNNRTG	3 cut(s)	488, 1662, 2475
Msp20I	TGGCCA	1 cut(s)	1535
MspA1I	CMGCKG	1 cut(s)	3580
MspI	CCGG	6 cut(s)	11, 105, 1035, 1761, 2031, 3817
MspR9I	CCNGG	5 cut(s)	81, 1782, 2839, 2888, 3246
MunI	CAATTG	1 cut(s)	123
Mva1269I	GAATGC	3 cut(s)	199, 1985, 2793
MvaI	CCWGG	5 cut(s)	81, 1782, 2839, 2888, 3246
MvnI	CGCG	1 cut(s)	3757
NheI	GCTAGC	1 cut(s)	391
NlaIV	GGNNCC	9 cut(s)	1096, 1583, 1648, 2114, 2667, 2824, 2892, 3004, 3805
NmeAIII	GCCGAG	1 cut(s)	1528
NmuCI	GTSAC	4 cut(s)	732, 1460, 2019, 2959
NspI	RCATGY	4 cut(s)	668, 1502, 2474, 2800
NspV	TTCGAA	1 cut(s)	1558
OliI	CACNNNNGTG	1 cut(s)	488
PaeI	GCATGC	2 cut(s)	668, 2474
PaeR7I	CTCGAG	1 cut(s)	206
PagI	TCATGA	2 cut(s)	939, 1009
PasI	CCCWGGG	1 cut(s)	3245
PceI	AGGCCT	1 cut(s)	3872
PciI	ACATGT	1 cut(s)	2796
PctI	GAATGC	3 cut(s)	199, 1985, 2793
PdmI	GAANNNNTTC	4 cut(s)	699, 1239, 2606, 3030
PfeI	GAWTC	8 cut(s)	278, 593, 796, 1147, 1328, 1640, 2075, 3530
Ple19I	CGATCG	1 cut(s)	1977
PleI	GAGTC	9 cut(s)	351, 739, 844, 1594, 1957, 2026, 2422, 2501, 3496
PpsI	GAGTC	9 cut(s)	351, 739, 844, 1594, 1957, 2026, 2422, 2501, 3496
Ppu21I	YACGTR	1 cut(s)	353
PpuMI	RGGWCCY	2 cut(s)	1570, 3613
PscI	ACATGT	1 cut(s)	2796
PshBI	ATTAAT	1 cut(s)	435
PsiI	TTATAA	1 cut(s)	1380
Psp124BI	GAGCTC	2 cut(s)	3018, 3594
Psp5II	RGGWCCY	2 cut(s)	1570, 3613
Psp6I	CCWGG	5 cut(s)	79, 1780, 2837, 2886, 3244
PspEI	GGTNACC	1 cut(s)	1766
PspFI	CCCAGC	4 cut(s)	2205, 2640, 3070, 3523
PspGI	CCWGG	5 cut(s)	79, 1780, 2837, 2886, 3244
PspN4I	GGNNCC	9 cut(s)	1096, 1583, 1648, 2114, 2667, 2824, 2892, 3004, 3805
PspPI	GGNCC	9 cut(s)	77, 420, 440, 462, 645, 1570, 1646, 2823, 3613
PspPPI	RGGWCCY	2 cut(s)	1570, 3613
PspXI	VCTCGAGB	1 cut(s)	206
PstI	CTGCAG	3 cut(s)	400, 3157, 3301
PstNI	CAGNNNCTG	3 cut(s)	1741, 1895, 3296
PvuI	CGATCG	1 cut(s)	1977
PvuII	CAGCTG	1 cut(s)	3580
RsaI	GTAC	9 cut(s)	308, 576, 711, 845, 959, 1374, 1549, 2728, 3311
RsaNI	GTAC	9 cut(s)	307, 575, 710, 844, 958, 1373, 1548, 2727, 3310
RseI	CAYNNNNRTG	3 cut(s)	488, 1662, 2475
SacI	GAGCTC	2 cut(s)	3018, 3594
Sau96I	GGNCC	9 cut(s)	77, 420, 440, 462, 645, 1570, 1646, 2823, 3613
ScaI	AGTACT	1 cut(s)	711
SchI	GAGTC	9 cut(s)	352, 740, 845, 1594, 1958, 2027, 2423, 2501, 3497
ScrFI	CCNGG	5 cut(s)	81, 1782, 2839, 2888, 3246
SduI	GDGCHC	8 cut(s)	1728, 1791, 2103, 2854, 3018, 3594, 3668, 3808
SfaNI	GCATC	7 cut(s)	392, 1355, 1440, 1468, 2523, 2586, 3650
SfcI	CTRYAG	7 cut(s)	396, 444, 1384, 3153, 3297, 3385, 3534
Sfr274I	CTCGAG	1 cut(s)	206
SfuI	TTCGAA	1 cut(s)	1558
SinI	GGWCC	7 cut(s)	77, 440, 462, 1570, 1646, 2823, 3613
SlaI	CTCGAG	1 cut(s)	206
SmiI	ATTTAAAT	1 cut(s)	2739
SmiMI	CAYNNNNRTG	3 cut(s)	488, 1662, 2475
SmlI	CTYRAG	7 cut(s)	206, 415, 2015, 2102, 2418, 2730, 3177
SmoI	CTYRAG	7 cut(s)	206, 415, 2015, 2102, 2418, 2730, 3177
SpeI	ACTAGT	1 cut(s)	3362
SphI	GCATGC	2 cut(s)	668, 2474
SseBI	AGGCCT	1 cut(s)	3872
SsiI	CCGC	5 cut(s)	769, 1391, 1597, 1716, 2362
SspI	AATATT	3 cut(s)	2389, 3168, 3347
SstI	GAGCTC	2 cut(s)	3018, 3594
StuI	AGGCCT	1 cut(s)	3872
StyD4I	CCNGG	5 cut(s)	79, 1780, 2837, 2886, 3244
StyI	CCWWGG	3 cut(s)	1694, 1991, 3131
SwaI	ATTTAAAT	1 cut(s)	2739
TaiI	ACGT	4 cut(s)	355, 693, 1378, 2234
TatI	WGTACW	5 cut(s)	574, 709, 843, 957, 3309
TauI	GCSGC	2 cut(s)	772, 1718
TfiI	GAWTC	8 cut(s)	278, 593, 796, 1147, 1328, 1640, 2075, 3530
TscAI	CASTG	9 cut(s)	54, 584, 1733, 2301, 2556, 2779, 3378, 3466, 3861
TseFI	GTSAC	4 cut(s)	732, 1460, 2019, 2959
Tsp45I	GTSAC	4 cut(s)	732, 1460, 2019, 2959
TspGWI	ACGGA	3 cut(s)	668, 1091, 1925
TspRI	CASTG	9 cut(s)	54, 584, 1733, 2301, 2556, 2779, 3378, 3466, 3861
VneI	GTGCAC	1 cut(s)	1724
VpaK11BI	GGWCC	7 cut(s)	77, 440, 462, 1570, 1646, 2823, 3613
VspI	ATTAAT	1 cut(s)	435
XapI	RAATTY	4 cut(s)	658, 1292, 1937, 3471
XbaI	TCTAGA	3 cut(s)	2038, 2857, 3481
XceI	RCATGY	4 cut(s)	668, 1502, 2474, 2800
XhoI	CTCGAG	1 cut(s)	206
XmiI	GTMKAC	2 cut(s)	236, 2569
XmnI	GAANNNNTTC	4 cut(s)	699, 1239, 2606, 3030
ZrmI	AGTACT	1 cut(s)	711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.