Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0010880

Physical Location & Seq

Genomic Coordinates Reverse (-)

915227 .. 927604

Gene Structure 12378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G001140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3822 bp

ATGGCTGTTCCGGTTGAAGAAGCCATTGCTGCGCTATCTACATTCTCACTGGAGGATGAGCAAGCAGAGGTTCAAGGGCCAGGAGTTTGGGTTTCGACTGACACCGGAGCAACTGACAGTCCAATTGAGTATAGCGATGTTTCTGCATATCGCTTGTCTTTATCTGAAGACACAAAAGCTCTCAATCAACTGAATGCTCTTATACTTGAGGGAAAGGAGATGGGATCTGTGCTGTATACATATCGTAGTTGTGTCAAGGCACTTCCTCAGCTTCCTGATTCTATGAAACAAAATCAAGCTGACTTGTACCTTGAAACTTATCAAGTTCTGGACTTGGAAATGAGTCGCCTACGTGAAATACAGCGCTGGCAAGCTTCGGCTGCATCAAAGCTAGCTGCAGATATGCAACGCTTCTCAAGGCCCGAGAGACGCATTAATGGACCTACAGTAACTCATCTCTGGTCCATGTTGAAGTTACTTGACACTTTGGTGCAACTTGATCATCTTAAAAATGCAAAGGCAAGCATACCAAATGATTTCTCTTGGTATAAAAGGACATTCACACAAGTAAGTGTACAGTGGCATGATACTGATTCAATGAGAGAGGAGTTGGATGACTTACAGATTTTCCTTAGCACAAGGTGGGCTATCTTGTTGAATTTGCATGCTGAGATGTTCCGTGTGAACAACGTAGAAGATATTCTTCAAGTACTCATAGTTTTTGCTGTCGAGTCACTAGAGCTGGATTTTGCACTTCTGTTCCCAGAGCGGCACATTCTTCTTCGTGTTCTGCCGATTCTAGTTGTCTTAGCTACATCGTCAGAAAAAGATAGCGAGTCTTTGTACAAGAGAGTGAAAATCAACAGACTTATTAACATATTCAAGAATGATCCAGTAATTCCTGCATTTCCAGATCTCCATCTTTCTCCTGCTGCAATCATGAAAGAATTGTCAATGTACTTCCAAAAGTTTTCTGCCCAAACTCGTCTTCTCAGCCTTCCATCACCTCATGAGCTTCCAGCCCGTGAGGCACAAGAATATCCTTTGTTTATCTTTTTTACCTTGACTTCATTTACTTATCAGAGGCATTATCTAATCATCAATCATATTGGATCCATCCGTGCCGAACATGATGACTTCACAATTCGTTTTGCTTCCTCCATGAATCAGATAGTGCCGATTGAGTGGTGCAAAGAAGTCAAGGGAAATATATATGATATGATTGTTGAAGGTTTTCAGCTTTTAAGTAGATGGACTGCACGCATTTGGGAACAATGTGCATGGAAATTTTCTCGTCCCTGCAAGGATATAGTTCCCTCGGAATCACAAGAGGCTTCAGCATCATTTTCTGACTATGAAAAGGTGGTACGTTATAACTATAGTGCGGAGGAAAGGAAAGCGCTGGTGGAACTTGTTAGCTACATAAAGAGCATAGGATCTATGATGCAGTCTAGTGACACATTGGTAGCTGATGCTTTATGGGAGACAATCCATGCCGAGGTTCAAGATTTTGTTCAGAATACATTGGCCACTATGTTGCGTACTACCTTTCGAAAGAAGAAGGACCTTTCTAGGATCCTTTCCGATATGCGGACTCTTTCAGCAGACTGGATGGCAAATACAAGTAAGTCTGAATCTGGACCCCTTCAGCATGGAAGTGAAGAAAGCAAAGGAAATGTTTTTTATCCAAGGCCAGTTGCACCAACAGCCGCTCAGGTGCACTGCTTGCAGTTCCTGATATATGAAGTTGTTTCCGGTGGTAACCTTAGGAAGCCTGGAGGGCTCTTTGGGAATAGTGGTTCTGAGATCCCTGTTAATGACCTAAAACAGTTAGAAACATTTTTTTACAAGCTTAGCTTCTTCCTGCATATTCTGGACTATTCAGCGACTGTCGCAATGTTGACGGATCTTGGTTTCTTATGGTTTAGAGAATTTTATTTGGAGTCTTCTCGTGTTATTCAGTTTCCGATCGAATGCTCTCTTCCTTGGATGTTGGTGGATTATGTGCTTGAGTCACATAATGCCGGTATTCTAGAGAGTGTTTTGATACCATTTGACATCTATAACGATTCTGCTCAGCAAGCATTGGTTGTGCTCAAGCAACGGTTCCTCTATGATGAAATTGAGGCTGAGGTGGATCATTGTTTCGACATTTTTGTTTCAAAACTCTGTGATACAATTTTCACATATTACAAGAGCTGGGCAGCAAGATACTCTGTCGAGCCTATGAGGTTCACAACACTGCTAAAGATGACCAGAGTGAAGTTGCTTGGAAGGATGATTGATTTAAGGAGTTTGATTACTGAGCGGATGAACAAAGTTTTCAGAGATAATATTGAGTTTCTATATGATCGTTTTGAGTCTCAAGATCTATGTGCTATTGTGGAACTAGAAAATCTGCTGGATATCTTAAAGCATGCCCATGAATTGCTCTCCAGAGATCTTTCAATAGACTCATTCAGTCTAATGTTGAATGAGATGCAAGAAAATATATCACTGGTGTCATATTCTAGTAGACTTGCCTCTCAGATTTGGTCAGAGATGCAGAATGATTTCTTGCCAAACTTCATCCTTTGCAATACTACCCAGCGTTTTACACGATCAGCAAAGGTTCCTCTTGTTCCTGTTCAAAAGCCATCAGTTCCCTACGCCAAACCTAATTTCTATTGTGGCACTCAAGATTTAAATGCAGCTCATCAAAGTTTTGCAAGGTTGCACAGTGGATTTTTTGGAATGCCTCACATGTTTTCCATTGTAAGGCTTCTAGGGTCCAGATCATTGCCCTGGCTAATCCGAGCACTTCTAGATCATATATCTAACAAGACAGCTACCCTGGAACCCTTGATAACAGGATTGCAAGAAGCATTGCCAAAATCTATTGGACTGCTTCCTTTTGATGGAGGCGTGACAGGTTGTATGAGGCTTGTTAAGGAACAGCTTACTTGGGGAACCAAATCAGAGCTCAAAGGAGAAGTTCTTCGGGGTATAAAGGAGATTGGAAGCGTATTATATTGGCTGGGGCTTCTTGATATCGTATTGAGAGAAACAGACACCACACATTTCATGCAAACATCCCCTTGGTTGGGCTTGCTTCCTGCTGCAGATGGACAAATATTACATTCTCAAGATGGTGGAGAAAGCCCTATTGTCAACCTTTTTAAATCAGCTACTTCTGCTATTGTGTCAAACCCTGGGTGTCCAAATCCGGCTTCCTTCAATACCTTATCGAAGCAGGCAGAAGCTGCAGATCTTTTGTACAAGGCTAACATGAACACGGGAAGCGTGCTGGAATATTCTCTAGCTTTTACTAGTGCAGCACTGGATAAATACTGTAGTAAATGGAGTGCTGTTCCCAAAACAGGGTTTATTGATATCACAACTTCAAAGGATTTCTATCGTATATACAGTGGCCTTCAAATTTGGTATCTAGAGGAGTCTGTTCGAGTATTGCCAAACAATCAAGAAGTGCTGGGTGATTCTGTAGCTTGGGGTGGTTGCACCATAATCTACTTGCTTGGGCAACAGCTGCATTTCGAGCTCTTGGATTTTTCATATCAGGTCCTCAATGTTGCTGAAGTGGAGGTTGCATCAATTACCCAAACCCATAAGAGCCCTCATTATGTTCAGGGATGGGATGGCCTGTTAGAAGTAATGAAGAAAGCAAGGAGGTTGAACAACCATGTGTTCTCCATGTTAAAGGCGCGTTGCCCTCTTGAAGATAAAACAGCTTGTGCTATCAAGCAAAGTGGTGCCCCTCTGCACCGGATCAAGTTTGAGAACACCGTCTCTGCATTTGAAACACTGCCACAGAAAGAGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010638 GO:0016043 GO:0030029 GO:0030036 GO:0030154 GO:0030832 GO:0030833 GO:0030838 GO:0031209 GO:0031334 GO:0032271 GO:0032273 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0032991 GO:0033043 GO:0043254 GO:0044087 GO:0044089 GO:0044424 GO:0044444 GO:0044464 GO:0045010 GO:0048468 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090558 GO:0090626 GO:0097435 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko03013 ko04810 map03013 map04810

Pfam Domains

Protein Families

DUF1394 FragX_IP

Protein Analysis

1273

Amino Acids

144.78

Weight (kDa)

5.63

Isoelectric Point (pI)

45.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FragX_IP	PF05994	363 - 1234	0.0	Cytoplasmic Fragile-X interacting family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0010880)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18410 AT5G18410 AT5G18410
fragaria_vesca	FvH4_6g01330 FvH4_6g01330 FvH4_6g01330
malus_domestica	MD12G1252900.v1.1
prunus_persica	Prupe.6G354800_v2.0.a1
pyrus_communis	pycom12g23200
rosa_chinensis	RchiOBHm_Chr3g0448901
rosa_laevigata	RLG00000025868
rosa_multiflora	Rmu_sc0003116.1_g000019
rosa_roxburghii	Rroxscaffold_6G00427090
rosa_rugosa	Rorug02G0617100 Rorug02G0617100
rosa_samantha	Rh3AG015400 Rh3BG015200 Rh3CG014100 Rh3DG015700
rosa_wichuraiana	Rw3G001140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1374
AccB1I	GGYRCC	1 cut(s)	3749
AccBSI	CCGCTC	3 cut(s)	769, 1712, 2308
AccI	GTMKAC	2 cut(s)	236, 2515
AccII	CGCG	1 cut(s)	3703
AciI	CCGC	5 cut(s)	769, 1385, 1591, 1710, 2308
AcoI	YGGCCR	1 cut(s)	1527
AcsI	RAATTY	4 cut(s)	658, 1286, 1931, 3417
AcuI	CTGAAG	4 cut(s)	186, 1320, 1631, 3594
AdeI	CACNNNGTG	1 cut(s)	642
AfaI	GTAC	8 cut(s)	308, 576, 711, 845, 959, 1368, 1543, 3257
AfeI	AGCGCT	2 cut(s)	365, 1401
AfiI	CCNNNNNNNGG	8 cut(s)	1498, 1590, 2757, 2897, 3082, 3083, 3359, 3360
AflIII	ACRYGT	1 cut(s)	2742
AhlI	ACTAGT	1 cut(s)	3308
AjnI	CCWGG	5 cut(s)	79, 1774, 2783, 2832, 3190
AjuI	GAANNNNNNNTTGG	6 cut(s)	972, 1004, 2645, 2677, 3193, 3225
AleI	CACNNNNGTG	1 cut(s)	488
AloI	GAACNNNNNNTCC	2 cut(s)	1783, 1815
Alw21I	GWGCWC	5 cut(s)	1722, 2097, 2800, 2964, 3540
Alw26I	GTCTC	4 cut(s)	421, 1478, 2367, 3790
Alw44I	GTGCAC	1 cut(s)	1718
AlwNI	CAGNNNCTG	3 cut(s)	1735, 1889, 3242
Ama87I	CYCGRG	1 cut(s)	422
Aor51HI	AGCGCT	2 cut(s)	365, 1401
AoxI	GGCC	7 cut(s)	77, 419, 1527, 1691, 3409, 3637, 3816
ApaLI	GTGCAC	1 cut(s)	1718
ApoI	RAATTY	4 cut(s)	658, 1286, 1931, 3417
AseI	ATTAAT	1 cut(s)	435
Asp700I	GAANNNNTTC	4 cut(s)	699, 1233, 2552, 2976
AspLEI	GCGC	4 cut(s)	34, 366, 1402, 3703
AspS9I	GGNCC	8 cut(s)	77, 420, 440, 462, 1564, 1640, 2769, 3559
AsuHPI	GGTGA	2 cut(s)	996, 3485
AsuII	TTCGAA	1 cut(s)	1552
AsuNHI	GCTAGC	1 cut(s)	391
AvaI	CYCGRG	1 cut(s)	422
AvaII	GGWCC	6 cut(s)	440, 462, 1564, 1640, 2769, 3559
AxyI	CCTNAGG	1 cut(s)	1766
BaeGI	GKGCMC	2 cut(s)	1722, 3754
BalI	TGGCCA	1 cut(s)	1529
BamHI	GGATCC	2 cut(s)	1112, 1575
BanI	GGYRCC	1 cut(s)	3749
BanII	GRGCYC	4 cut(s)	1785, 2964, 3540, 3614
BauI	CACGAG	1 cut(s)	1950
BbsI	GAAGAC	3 cut(s)	174, 980, 1938
Bbv12I	GWGCWC	5 cut(s)	1722, 2097, 2800, 2964, 3540
BbvCI	CCTCAGC	2 cut(s)	267, 2130
BcgI	CGANNNNNNTGC	2 cut(s)	125, 159
BciT130I	CCWGG	5 cut(s)	81, 1776, 2785, 2834, 3192
BclI	TGATCA	1 cut(s)	499
BcoDI	GTCTC	4 cut(s)	421, 1478, 2367, 3790
BcuI	ACTAGT	1 cut(s)	3308
BfmI	CTRYAG	7 cut(s)	396, 444, 1378, 3099, 3243, 3331, 3480
BfoI	RGCGCY	2 cut(s)	367, 1403
BglI	GCCNNNNNGGC	2 cut(s)	1028, 1780
BglII	AGATCT	4 cut(s)	913, 2368, 2440, 3247
BlpI	GCTNAGC	2 cut(s)	1853, 2076
BmcAI	AGTACT	1 cut(s)	711
Bme1390I	CCNGG	5 cut(s)	81, 1776, 2785, 2834, 3192
Bme18I	GGWCC	6 cut(s)	440, 462, 1564, 1640, 2769, 3559
BmeT110I	CYCGRG	1 cut(s)	422
BmgT120I	GGNCC	8 cut(s)	77, 420, 440, 462, 1564, 1640, 2769, 3559
BmiI	GGNNCC	9 cut(s)	1114, 1577, 1642, 2108, 2613, 2770, 2838, 2950, 3751
BmrFI	CCNGG	5 cut(s)	81, 1776, 2785, 2834, 3192
BmsI	GCATC	7 cut(s)	392, 1349, 1434, 1462, 2469, 2532, 3596
BmtI	GCTAGC	1 cut(s)	395
BpiI	GAAGAC	3 cut(s)	174, 980, 1938
BpmI	CTGGAG	3 cut(s)	71, 1797, 2419
Bpu10I	CCTNAGC	4 cut(s)	267, 632, 1713, 2130
Bpu1102I	GCTNAGC	2 cut(s)	1853, 2076
Bpu14I	TTCGAA	1 cut(s)	1552
BpuEI	CTTGAG	7 cut(s)	227, 400, 2030, 2081, 2349, 2661, 3108
BsaAI	YACGTR	1 cut(s)	353
BsaBI	GATNNNNATC	2 cut(s)	918, 3393
BsaJI	CCNNGG	9 cut(s)	1317, 1497, 1688, 1985, 2783, 2832, 3077, 3190, 3191
BsaWI	WCCGGW	4 cut(s)	10, 104, 1754, 3762
BsaXI	ACNNNNNCTCC	2 cut(s)	75, 105
Bsc4I	CCNNNNNNNGG	8 cut(s)	1498, 1590, 2757, 2897, 3082, 3083, 3359, 3360
Bse118I	RCCGGY	1 cut(s)	2024
Bse1I	ACTGG	6 cut(s)	54, 893, 1613, 1694, 2502, 3324
Bse21I	CCTNAGG	1 cut(s)	1766
Bse3DI	GCAATG	4 cut(s)	24, 1902, 2777, 2864
Bse8I	GATNNNNATC	2 cut(s)	918, 3393
BseBI	CCWGG	5 cut(s)	81, 1776, 2785, 2834, 3192
BseDI	CCNNGG	9 cut(s)	1317, 1497, 1688, 1985, 2783, 2832, 3077, 3190, 3191
BseJI	GATNNNNATC	2 cut(s)	918, 3393
BseLI	CCNNNNNNNGG	8 cut(s)	1498, 1590, 2757, 2897, 3082, 3083, 3359, 3360
BseMI	GCAATG	4 cut(s)	24, 1902, 2777, 2864
BseMII	CTCAG	9 cut(s)	281, 660, 1006, 1727, 1794, 2090, 2121, 2295, 2540
BseNI	ACTGG	6 cut(s)	54, 893, 1613, 1694, 2502, 3324
BseRI	GAGGAG	2 cut(s)	620, 3446
BseSI	GKGCMC	2 cut(s)	1722, 3754
BseYI	CCCAGC	4 cut(s)	2199, 2586, 3016, 3469
BsgI	GTGCAG	3 cut(s)	1242, 3333, 3743
Bsh1236I	CGCG	1 cut(s)	3703
Bsh1285I	CGRYCG	1 cut(s)	1971
BshFI	GGCC	7 cut(s)	79, 421, 1529, 1693, 3411, 3639, 3818
BshNI	GGYRCC	1 cut(s)	3749
BsiEI	CGRYCG	1 cut(s)	1971
BsiHKAI	GWGCWC	5 cut(s)	1722, 2097, 2800, 2964, 3540
BsiHKCI	CYCGRG	1 cut(s)	422
BsiSI	CCGG	6 cut(s)	11, 105, 1755, 2025, 3206, 3763
BslFI	GGGAC	1 cut(s)	1281
BslI	CCNNNNNNNGG	8 cut(s)	1498, 1590, 2757, 2897, 3082, 3083, 3359, 3360
BsmAI	GTCTC	4 cut(s)	421, 1478, 2367, 3790
BsmBI	CGTCTC	2 cut(s)	421, 3790
BsmFI	GGGAC	1 cut(s)	1281
BsmI	GAATGC	3 cut(s)	199, 1979, 2739
BsnI	GGCC	7 cut(s)	79, 421, 1529, 1693, 3411, 3639, 3818
BsoBI	CYCGRG	1 cut(s)	422
Bsp119I	TTCGAA	1 cut(s)	1552
Bsp1286I	GDGCHC	8 cut(s)	1722, 1785, 2097, 2800, 2964, 3540, 3614, 3754
Bsp1407I	TGTACA	3 cut(s)	574, 843, 3255
Bsp1720I	GCTNAGC	2 cut(s)	1853, 2076
BspACI	CCGC	5 cut(s)	769, 1385, 1591, 1710, 2308
BspANI	GGCC	7 cut(s)	79, 421, 1529, 1693, 3411, 3639, 3818
BspCNI	CTCAG	9 cut(s)	280, 661, 1005, 1726, 1795, 2089, 2122, 2296, 2539
BspFNI	CGCG	1 cut(s)	3703
BspHI	TCATGA	2 cut(s)	939, 1009
BspLI	GGNNCC	9 cut(s)	1114, 1577, 1642, 2108, 2613, 2770, 2838, 2950, 3751
BspMAI	CTGCAG	3 cut(s)	400, 3103, 3247
BspOI	GCTAGC	1 cut(s)	395
BspT104I	TTCGAA	1 cut(s)	1552
BspT107I	GGYRCC	1 cut(s)	3749
BsrBI	CCGCTC	3 cut(s)	769, 1712, 2308
BsrDI	GCAATG	4 cut(s)	24, 1902, 2777, 2864
BsrFI	RCCGGY	1 cut(s)	2024
BsrGI	TGTACA	3 cut(s)	574, 843, 3255
BsrI	ACTGG	6 cut(s)	54, 893, 1613, 1694, 2502, 3324
BssAI	RCCGGY	1 cut(s)	2024
BssECI	CCNNGG	9 cut(s)	1317, 1497, 1688, 1985, 2783, 2832, 3077, 3190, 3191
BssNAI	GTATAC	1 cut(s)	237
BssSI	CACGAG	1 cut(s)	1950
BssT1I	CCWWGG	3 cut(s)	1688, 1985, 3077
Bst1107I	GTATAC	1 cut(s)	237
Bst2BI	CACGAG	1 cut(s)	1950
Bst2UI	CCWGG	5 cut(s)	81, 1776, 2785, 2834, 3192
Bst6I	CTCTTC	1 cut(s)	1986
BstAPI	GCANNNNNTGC	3 cut(s)	1726, 3242, 3526
BstAUI	TGTACA	3 cut(s)	574, 843, 3255
BstBAI	YACGTR	1 cut(s)	353
BstBI	TTCGAA	1 cut(s)	1552
BstEII	GGTNACC	1 cut(s)	1760
BstFNI	CGCG	1 cut(s)	3703
BstH2I	RGCGCY	2 cut(s)	367, 1403
BstHHI	GCGC	4 cut(s)	34, 366, 1402, 3703
BstMAI	GTCTC	4 cut(s)	421, 1478, 2367, 3790
BstMCI	CGRYCG	1 cut(s)	1971
BstNI	CCWGG	5 cut(s)	81, 1776, 2785, 2834, 3192
BstNSI	RCATGY	3 cut(s)	668, 2420, 2746
BstPI	GGTNACC	1 cut(s)	1760
BstSCI	CCNGG	5 cut(s)	79, 1774, 2783, 2832, 3190
BstSFI	CTRYAG	7 cut(s)	396, 444, 1378, 3099, 3243, 3331, 3480
BstSLI	GKGCMC	2 cut(s)	1722, 3754
BstUI	CGCG	1 cut(s)	3703
BstV2I	GAAGAC	3 cut(s)	174, 980, 1938
BstXI	CCANNNNNNTGG	1 cut(s)	87
BstZ17I	GTATAC	1 cut(s)	237
Bsu36I	CCTNAGG	1 cut(s)	1766
BsuRI	GGCC	7 cut(s)	79, 421, 1529, 1693, 3411, 3639, 3818
BtgZI	GCGATG	1 cut(s)	150
BtsI	GCAGTG	3 cut(s)	1720, 2240, 3800
BtsIMutI	CAGTG	9 cut(s)	47, 584, 1720, 2240, 2495, 2725, 3317, 3412, 3800
CaiI	CAGNNNCTG	3 cut(s)	1735, 1889, 3242
CciI	TCATGA	2 cut(s)	939, 1009
CfoI	GCGC	4 cut(s)	34, 366, 1402, 3703
Cfr10I	RCCGGY	1 cut(s)	2024
Cfr13I	GGNCC	8 cut(s)	77, 420, 440, 462, 1564, 1640, 2769, 3559
CseI	GACGC	1 cut(s)	438
Csp6I	GTAC	8 cut(s)	307, 575, 710, 844, 958, 1367, 1542, 3256
CspCI	CAANNNNNGTGG	2 cut(s)	3727, 3762
CviQI	GTAC	8 cut(s)	307, 575, 710, 844, 958, 1367, 1542, 3256
DraI	TTTAAA	2 cut(s)	2685, 3160
DraIII	CACNNNGTG	1 cut(s)	642
EaeI	YGGCCR	1 cut(s)	1527
Eam1104I	CTCTTC	1 cut(s)	1986
EarI	CTCTTC	1 cut(s)	1986
Ecl136II	GAGCTC	2 cut(s)	2962, 3538
Eco130I	CCWWGG	3 cut(s)	1688, 1985, 3077
Eco147I	AGGCCT	1 cut(s)	3818
Eco24I	GRGCYC	4 cut(s)	1785, 2964, 3540, 3614
Eco32I	GATATC	3 cut(s)	2407, 3031, 3373
Eco47I	GGWCC	6 cut(s)	440, 462, 1564, 1640, 2769, 3559
Eco47III	AGCGCT	2 cut(s)	365, 1401
Eco53kI	GAGCTC	2 cut(s)	2962, 3538
Eco57I	CTGAAG	4 cut(s)	186, 1320, 1631, 3594
Eco81I	CCTNAGG	1 cut(s)	1766
Eco88I	CYCGRG	1 cut(s)	422
Eco91I	GGTNACC	1 cut(s)	1760
EcoICRI	GAGCTC	2 cut(s)	2962, 3538
EcoO109I	RGGNCCY	2 cut(s)	1564, 3559
EcoO65I	GGTNACC	1 cut(s)	1760
EcoRII	CCWGG	5 cut(s)	79, 1774, 2783, 2832, 3190
EcoRV	GATATC	3 cut(s)	2407, 3031, 3373
EcoT14I	CCWWGG	3 cut(s)	1688, 1985, 3077
EcoT38I	GRGCYC	4 cut(s)	1785, 2964, 3540, 3614
ErhI	CCWWGG	3 cut(s)	1688, 1985, 3077
Esp3I	CGTCTC	2 cut(s)	421, 3790
FalI	AAGNNNNNCTT	4 cut(s)	687, 719, 1841, 1873
FaqI	GGGAC	1 cut(s)	1281
FbaI	TGATCA	1 cut(s)	499
FblI	GTMKAC	2 cut(s)	236, 2515
FriOI	GRGCYC	4 cut(s)	1785, 2964, 3540, 3614
GlaI	GCGC	4 cut(s)	33, 365, 1401, 3702
GsaI	CCCAGC	4 cut(s)	2203, 2590, 3020, 3473
GsuI	CTGGAG	3 cut(s)	71, 1797, 2419
HaeII	RGCGCY	2 cut(s)	367, 1403
HaeIII	GGCC	7 cut(s)	79, 421, 1529, 1693, 3411, 3639, 3818
HapII	CCGG	6 cut(s)	11, 105, 1755, 2025, 3206, 3763
HgaI	GACGC	1 cut(s)	438
HhaI	GCGC	4 cut(s)	34, 366, 1402, 3703
Hin6I	GCGC	4 cut(s)	32, 364, 1400, 3701
HinP1I	GCGC	4 cut(s)	32, 364, 1400, 3701
HincII	GTYRAC	2 cut(s)	1902, 3151
HindII	GTYRAC	2 cut(s)	1902, 3151
HindIII	AAGCTT	2 cut(s)	372, 1850
HpaII	CCGG	6 cut(s)	11, 105, 1755, 2025, 3206, 3763
HphI	GGTGA	2 cut(s)	996, 3485
Hpy166II	GTNNAC	8 cut(s)	237, 575, 685, 1720, 1902, 2235, 2516, 3151
Hpy8I	GTNNAC	8 cut(s)	237, 575, 685, 1720, 1902, 2235, 2516, 3151
HpyAV	CCTTC	7 cut(s)	1007, 1223, 1555, 1655, 2268, 3223, 3422
HpyCH4IV	ACGT	3 cut(s)	352, 690, 1369
HpySE526I	ACGT	3 cut(s)	352, 690, 1369
HspAI	GCGC	4 cut(s)	32, 364, 1400, 3701
Ksp22I	TGATCA	1 cut(s)	499
LmnI	GCTCC	1 cut(s)	107
LweI	GCATC	7 cut(s)	392, 1349, 1434, 1462, 2469, 2532, 3596
MaeII	ACGT	3 cut(s)	352, 690, 1369
MaeIII	GTNAC	7 cut(s)	448, 474, 732, 1454, 1760, 2013, 2905
MbiI	CCGCTC	3 cut(s)	769, 1712, 2308
MfeI	CAATTG	1 cut(s)	123
MhlI	GDGCHC	8 cut(s)	1722, 1785, 2097, 2800, 2964, 3540, 3614, 3754
MlsI	TGGCCA	1 cut(s)	1529
MluNI	TGGCCA	1 cut(s)	1529
MlyI	GAGTC	9 cut(s)	352, 740, 845, 1588, 1952, 2021, 2369, 2447, 3443
MmeI	TCCRAC	1 cut(s)	591
Mox20I	TGGCCA	1 cut(s)	1529
MroXI	GAANNNNTTC	4 cut(s)	699, 1233, 2552, 2976
MscI	TGGCCA	1 cut(s)	1529
MslI	CAYNNNNRTG	3 cut(s)	488, 1656, 2421
Msp20I	TGGCCA	1 cut(s)	1529
MspA1I	CMGCKG	1 cut(s)	3526
MspI	CCGG	6 cut(s)	11, 105, 1755, 2025, 3206, 3763
MspR9I	CCNGG	5 cut(s)	81, 1776, 2785, 2834, 3192
MunI	CAATTG	1 cut(s)	123
Mva1269I	GAATGC	3 cut(s)	199, 1979, 2739
MvaI	CCWGG	5 cut(s)	81, 1776, 2785, 2834, 3192
MvnI	CGCG	1 cut(s)	3703
NheI	GCTAGC	1 cut(s)	391
NlaIV	GGNNCC	9 cut(s)	1114, 1577, 1642, 2108, 2613, 2770, 2838, 2950, 3751
NmeAIII	GCCGAG	1 cut(s)	1522
NmuCI	GTSAC	4 cut(s)	732, 1454, 2013, 2905
NspI	RCATGY	3 cut(s)	668, 2420, 2746
NspV	TTCGAA	1 cut(s)	1552
OliI	CACNNNNGTG	1 cut(s)	488
PaeI	GCATGC	2 cut(s)	668, 2420
PagI	TCATGA	2 cut(s)	939, 1009
PasI	CCCWGGG	1 cut(s)	3191
PceI	AGGCCT	1 cut(s)	3818
PciI	ACATGT	1 cut(s)	2742
PctI	GAATGC	3 cut(s)	199, 1979, 2739
PdmI	GAANNNNTTC	4 cut(s)	699, 1233, 2552, 2976
PfeI	GAWTC	8 cut(s)	278, 593, 796, 1165, 1322, 1634, 2069, 3476
Ple19I	CGATCG	1 cut(s)	1971
PleI	GAGTC	9 cut(s)	351, 739, 844, 1588, 1951, 2020, 2368, 2447, 3442
PpsI	GAGTC	9 cut(s)	351, 739, 844, 1588, 1951, 2020, 2368, 2447, 3442
Ppu21I	YACGTR	1 cut(s)	353
PpuMI	RGGWCCY	2 cut(s)	1564, 3559
PscI	ACATGT	1 cut(s)	2742
PshBI	ATTAAT	1 cut(s)	435
PsiI	TTATAA	1 cut(s)	1374
Psp124BI	GAGCTC	2 cut(s)	2964, 3540
Psp5II	RGGWCCY	2 cut(s)	1564, 3559
Psp6I	CCWGG	5 cut(s)	79, 1774, 2783, 2832, 3190
PspEI	GGTNACC	1 cut(s)	1760
PspFI	CCCAGC	4 cut(s)	2199, 2586, 3016, 3469
PspGI	CCWGG	5 cut(s)	79, 1774, 2783, 2832, 3190
PspN4I	GGNNCC	9 cut(s)	1114, 1577, 1642, 2108, 2613, 2770, 2838, 2950, 3751
PspPI	GGNCC	8 cut(s)	77, 420, 440, 462, 1564, 1640, 2769, 3559
PspPPI	RGGWCCY	2 cut(s)	1564, 3559
PstI	CTGCAG	3 cut(s)	400, 3103, 3247
PstNI	CAGNNNCTG	3 cut(s)	1735, 1889, 3242
PvuI	CGATCG	1 cut(s)	1971
PvuII	CAGCTG	1 cut(s)	3526
RsaI	GTAC	8 cut(s)	308, 576, 711, 845, 959, 1368, 1543, 3257
RsaNI	GTAC	8 cut(s)	307, 575, 710, 844, 958, 1367, 1542, 3256
RseI	CAYNNNNRTG	3 cut(s)	488, 1656, 2421
SacI	GAGCTC	2 cut(s)	2964, 3540
Sau96I	GGNCC	8 cut(s)	77, 420, 440, 462, 1564, 1640, 2769, 3559
ScaI	AGTACT	1 cut(s)	711
SchI	GAGTC	9 cut(s)	352, 740, 845, 1588, 1952, 2021, 2369, 2447, 3443
ScrFI	CCNGG	5 cut(s)	81, 1776, 2785, 2834, 3192
SduI	GDGCHC	8 cut(s)	1722, 1785, 2097, 2800, 2964, 3540, 3614, 3754
SfaNI	GCATC	7 cut(s)	392, 1349, 1434, 1462, 2469, 2532, 3596
SfcI	CTRYAG	7 cut(s)	396, 444, 1378, 3099, 3243, 3331, 3480
SfuI	TTCGAA	1 cut(s)	1552
SinI	GGWCC	6 cut(s)	440, 462, 1564, 1640, 2769, 3559
SmiI	ATTTAAAT	1 cut(s)	2685
SmiMI	CAYNNNNRTG	3 cut(s)	488, 1656, 2421
SmlI	CTYRAG	7 cut(s)	206, 415, 2009, 2096, 2364, 2676, 3123
SmoI	CTYRAG	7 cut(s)	206, 415, 2009, 2096, 2364, 2676, 3123
SpeI	ACTAGT	1 cut(s)	3308
SphI	GCATGC	2 cut(s)	668, 2420
SseBI	AGGCCT	1 cut(s)	3818
SsiI	CCGC	5 cut(s)	769, 1385, 1591, 1710, 2308
SspI	AATATT	3 cut(s)	2335, 3114, 3293
SstI	GAGCTC	2 cut(s)	2964, 3540
StuI	AGGCCT	1 cut(s)	3818
StyD4I	CCNGG	5 cut(s)	79, 1774, 2783, 2832, 3190
StyI	CCWWGG	3 cut(s)	1688, 1985, 3077
SwaI	ATTTAAAT	1 cut(s)	2685
TaiI	ACGT	3 cut(s)	355, 693, 1372
TaqI	TCGA	9 cut(s)	95, 729, 1552, 1971, 2148, 2220, 3227, 3442, 3534
TatI	WGTACW	5 cut(s)	574, 709, 843, 957, 3255
TauI	GCSGC	2 cut(s)	772, 1712
TfiI	GAWTC	8 cut(s)	278, 593, 796, 1165, 1322, 1634, 2069, 3476
TscAI	CASTG	9 cut(s)	54, 584, 1727, 2247, 2502, 2725, 3324, 3412, 3807
TseFI	GTSAC	4 cut(s)	732, 1454, 2013, 2905
Tsp45I	GTSAC	4 cut(s)	732, 1454, 2013, 2905
TspGWI	ACGGA	3 cut(s)	668, 1109, 1919
TspRI	CASTG	9 cut(s)	54, 584, 1727, 2247, 2502, 2725, 3324, 3412, 3807
VneI	GTGCAC	1 cut(s)	1718
VpaK11BI	GGWCC	6 cut(s)	440, 462, 1564, 1640, 2769, 3559
VspI	ATTAAT	1 cut(s)	435
XapI	RAATTY	4 cut(s)	658, 1286, 1931, 3417
XbaI	TCTAGA	3 cut(s)	2032, 2803, 3427
XceI	RCATGY	3 cut(s)	668, 2420, 2746
XmiI	GTMKAC	2 cut(s)	236, 2515
XmnI	GAANNNNTTC	4 cut(s)	699, 1233, 2552, 2976
ZrmI	AGTACT	1 cut(s)	711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.