Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0010880

Physical Location & Seq

Genomic Coordinates Reverse (-)

47670975 .. 47684025

Gene Structure 13051 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00427090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3858 bp

ATGGCTGTTCCGGTCGAAGAAGCCATTGCTGCGCTATCTACATTCTCACTGGAGGATGAGCAAGCAGAGGTTCAAGGACCAGGAATTTGGGTTTCGACTGACACCGGAGCAACTGACAGTCCAATTGAGTATAGCGATGTTTCTGCATATCGCTTGTCTCTATCAGAAGACACAAAAGCTCTCAATCAACTGAATGCTCTTATACTTGAGGGAAAGGAGATGGGATCTGTGCTGTATACATATCGTAGTTGTGTCAAGGCACTTCCTCAGCTTCCCGATTCTATGAAACAAAATCAAGCTGACTTGTACCTTGAAACTTATCAAGTTCTGGACTTGGAAATGAGTCGCCTACGTGAAATACAGCGCTGGCAAGCTTCGGCTGCATCAAAGCTAGCTGCAGATATGCAACGCTTCTCAAGGCCCGAGAGACGCATTAATGGCCCTACAGTAACTCATCTCTGGTCCATGTTGAAGTTACTTGACACTTTGGTGCAACTTGATCATCTTAAAAATGCAAAGGCAAGCATACCAAATGATTTCTCTTGGTATAAAAGGACATTCACACAAGTAAGTGTACAGTGGCATGATACTGATTCAATGAGAGAGGAGTTGGATGACTTACAGATTTTCCTTAGCACAAGGTGGGCTATCTTGTTGAATTTGCATGCTGAGATGTTCCGCGTGAACAACGTAGAAGATATTCTTCAAGTACTCATAGTTTTTGCTGTCGAGTCACTAGAGCTGGATTTTGCACTTCTGTTCCCAGAGCGGCACATTCTTCTTCGTGTTCTGCCGATTCTAGTTGTCTTAGCAACATCGTCAGAAAAAGATAGCGAGTCTTTGTACAAGAGAGTGAAAATCAACAGACTTATTAACATATTCAAGAATGATCCAGTAATTCCTGCATTTCCAGATCTCCATCTTTCTCCTGCTGCAATCATGAAAGAATTGTCAATGTACTTCCAAAAGTTTTCTGCCCAAACTCGTCTTCTCAGCCTTCCATCACCTCATGAGCTTCCAGCCCGTGAGGCACAAGAATATCCTTTGCATTATCTAATCGTCAATCATATTGGATCCATCCGTGCCGAACATGATGACTTCACAATTCGTTTTGCTTCCTCCATGAATCAGCTATTGTTGTTGAAGTCAACAGATAGTGCCGATATTGAGTGGTGCAAAGAAGTCAAGGGAAATATATATGATATGATTGTTGAAGGTTTTCAGCTTTTAAGTAGATGGACTGCACGCATTTGGGAACAATGTGCATGGAAATTTTCTCGTCCCTGCAAGGATATAGTTCCCTCTGAATCACAAGAGGCTTCAGCATCATTTTCTGACTATGAAAAGGTGGTACGTTATAACTATAGTGCAGAGGAAAGGAAAGCGCTGGTGGAACTTGTTAGCTACATAAAGAGCATAGGATCTATGATGCAGTCTAGTGACACATTGGTAGCTGATGCTTTATGGGAGACAATACATGCCGAGGTTCAAGATTTTGTTCAAAATACATTGGCCACTATGTTGCGTACTACCTTTCGAAAGAAGAAGGACCTTTCTAGGATCCTTTCCGATATGCGGACTCTTTCAGCAGACTGGATGGCAAATACAAGTAAGTCTGAATCTGGACCCCTTCAGCATGGTAGTGATGAAAGCAAAGGAAATGTTTTTTATCCAAGGCCAGTTGCACCAACAGCCGCTCAGGTGCACTGCTTGCAGTTCCTGATATATGAAGTTGTTTCCGGTGGTAACCTTAGGAAGCCTGGAGGGCTCTTTGGGAATAGTGGTTCTGAGATCCCTGTTAATGACCTAAAACAGTTAGAAACATTTTTTTACAAGCTTAGCTTCTTCCTGCATATTCTGGACTATTCAGCGACTGTCGCAATGTTGACAGATCTTGGTTTCTTATGGTTCAGAGAATTTTATTTGGAGTCTTCTCGTGTTATTCAGTTTCCAATCGAATGCTCTCTTCCTTGGATGTTGGTGGATTATGTGCTTGAGTCACATAATGCTGGTATTCTAGAGAGTGTTTTGATACCATTTGACATCTATAACGATTCTGCTCAGCAAGCATTGGTTGTGCTCAAGCAACGGTTCCTCTATGATGAAATTGAGGCTGAGGTGGATCATTGTTTCGACATATTTGTTTCAAAACTCTGTGATACAATTTTCACATATTACAAGAGCTGGGCAGCAAGCAAGCTACTTGATGCGTCATTCCTTTTCGCATTGGACAATGGAGAAAGATACTCTGTTGAGCCTATGAGGTTCACAACACTGCTAAAGATGACCAGAGTCAAGTTGCTTGGAAGGATGATTGATTTAAGGAGTTTGATTACTGAGCGGATGAACAAAGTTTTCAGAGATAATATTGAGTTTCTATATGATCGTTTTGAGTCTCAAGATCTATGTGCTATTGTGGAACTAGAAAATCTGCTGGATATCTTAAAGCATGCCCATGAATTGCTCTCCAGAGATCTTTCAATAGACTCATTCAGTCTAATGTTGAATGAGATGCAAGAAAATATATCACTGGTGTCATATTCTAGTAGACTTGCCTCTCAGATTTGGTCAGAGATGCAGAATGATTTCTTGCCGAACTTCATCCTTTGCAATACTACCCAGCGTTTTACGCGATCAGCAAAGGTTCCTCTTGTTCCTGTTCAAAAGCCATCAGTTCCCTACGCCAAGCCTAATTTCTATTGCGGTACTCAAGATTTAAATGCAGCTCATCAAAGTTTTGCAAGGTTGCACAGTGGATTTTTTGGAATGCCTCACATGTTTTCCATTGTAAGGCTTCTAGGGTCCAGATCATTGCCTTGGCTAATCCGAGCACTTCTAGATCATATATCTAACAAGACAGCTACCCTGGAACCCTTGATAACAGGATTGCAAGAAGCATTGCCAAAATCTATTGGACTGCTTCCTTTTGATGGAGGCGTGACAGGTTGTATGAGGCTTGTTAAGGAACAGCTTACTTGGGGAACCAAATCAGAGCTCAAAGGAGAAGTTCTTCGGGGTATAAAGGAGATTGGAAGCGTATTATATTGGCTGGGGCTTCTTGATATCGTATTGAGAGAAACAGACACCACACATTTTATGCAAACATCCCCTTGGTTGGGCTTGCTTCCTGCTGCAGATGGACAAATATTACATTCTCAAGATGGTGGAGAAAGCCCTATTGTCAACCTTTTTAAATCAGCTACTTCTGCTATTGTGTCAAACCCTGGGTGTCCAAATCCGGCTTCCTTCAATACCTTATCGAAGCAGGCAGAAGCTGCAGATCTTTTGTACAAGGCTAACATGAACACGGGAAGTGTGCTGGAATATTCTCTAGCTTTTACTAGTGCAGCACTGGATAAATACTGTAGTAAATGGAGTGCTGTTCCCAAAACAGGGTTTATTGATATCACAACTTCAAAGGATTTCTATCGTATATACAGTGGCCTTCAAATTTGGTATCTAGAGGAGTCTGTTCGAGTATTGCCAAAAAATCAAGAAGTGCTGGGTGATTCTGTAGCTTGGGGTGGTTGCACCATAATCTACTTGCTTGGGCAACAGCTGCATTTCGAGCTCTTGGATTTTTCATATCAGGTCCTCAATGTTGCTGAAGTGGAGGTTGCATCAATTACCCAAACCCATAAGAGCCCTCATTATGTTCAGAAGGGATGGGATGGCCTGTTAGAAGTAATGAAGAAAGCAAGGAGGTTGAACAACCATGTGTTCTCCATGTTAAAGGCGCGTTGCCCTCTTGAAGATAAGACAGCTTGTGCTATCAAGCAAAGTGGTGCCCCTCTGCACCGGATCAAGTTTGAGAACACCGTCTCTGCATTTGAAACACTGCCACAGAAAGAGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010638 GO:0016043 GO:0030029 GO:0030036 GO:0030154 GO:0030832 GO:0030833 GO:0030838 GO:0031209 GO:0031334 GO:0032271 GO:0032273 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0032991 GO:0033043 GO:0043254 GO:0044087 GO:0044089 GO:0044424 GO:0044444 GO:0044464 GO:0045010 GO:0048468 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090558 GO:0090626 GO:0097435 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko03013 ko04810 map03013 map04810

Pfam Domains

Protein Families

DUF1394 FragX_IP

Protein Analysis

1285

Amino Acids

145.83

Weight (kDa)

5.56

Isoelectric Point (pI)

43.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FragX_IP	PF05994	350 - 1246	0.0	Cytoplasmic Fragile-X interacting family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0010880)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18410 AT5G18410 AT5G18410
fragaria_vesca	FvH4_6g01330 FvH4_6g01330 FvH4_6g01330
malus_domestica	MD12G1252900.v1.1
prunus_persica	Prupe.6G354800_v2.0.a1
pyrus_communis	pycom12g23200
rosa_chinensis	RchiOBHm_Chr3g0448901
rosa_laevigata	RLG00000025868
rosa_multiflora	Rmu_sc0003116.1_g000019
rosa_roxburghii	Rroxscaffold_6G00427090
rosa_rugosa	Rorug02G0617100 Rorug02G0617100
rosa_samantha	Rh3AG015400 Rh3BG015200 Rh3CG014100 Rh3DG015700
rosa_wichuraiana	Rw3G001140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1359
AccB1I	GGYRCC	1 cut(s)	3785
AccBSI	CCGCTC	3 cut(s)	769, 1697, 2341
AccI	GTMKAC	2 cut(s)	236, 2548
AccII	CGCG	3 cut(s)	681, 2632, 3739
AciI	CCGC	6 cut(s)	679, 769, 1576, 1695, 2341, 2703
AcoI	YGGCCR	1 cut(s)	1512
AcsI	RAATTY	5 cut(s)	84, 658, 1271, 1916, 3450
AcuI	CTGAAG	3 cut(s)	1305, 1616, 3627
AdeI	CACNNNGTG	1 cut(s)	642
AfaI	GTAC	9 cut(s)	308, 576, 711, 845, 959, 1353, 1528, 2707, 3290
AfeI	AGCGCT	2 cut(s)	365, 1386
AfiI	CCNNNNNNNGG	7 cut(s)	1575, 2790, 2930, 3115, 3116, 3392, 3393
AflIII	ACRYGT	1 cut(s)	2775
AhlI	ACTAGT	1 cut(s)	3341
AjnI	CCWGG	4 cut(s)	79, 1759, 2865, 3223
AjuI	GAANNNNNNNTTGG	6 cut(s)	972, 1004, 2678, 2710, 3226, 3258
AleI	CACNNNNGTG	1 cut(s)	488
AloI	GAACNNNNNNTCC	2 cut(s)	1768, 1800
Alw21I	GWGCWC	5 cut(s)	1707, 2082, 2833, 2997, 3573
Alw26I	GTCTC	5 cut(s)	162, 421, 1463, 2400, 3826
Alw44I	GTGCAC	1 cut(s)	1703
AlwNI	CAGNNNCTG	3 cut(s)	1720, 1874, 3275
Ama87I	CYCGRG	1 cut(s)	422
Aor51HI	AGCGCT	2 cut(s)	365, 1386
AoxI	GGCC	7 cut(s)	419, 439, 1512, 1676, 3442, 3673, 3852
ApaLI	GTGCAC	1 cut(s)	1703
ApoI	RAATTY	5 cut(s)	84, 658, 1271, 1916, 3450
ArsI	GACNNNNNNTTYG	2 cut(s)	69, 101
AseI	ATTAAT	1 cut(s)	435
Asp700I	GAANNNNTTC	4 cut(s)	699, 1218, 2585, 3009
AspLEI	GCGC	4 cut(s)	34, 366, 1387, 3739
AspS9I	GGNCC	8 cut(s)	77, 420, 440, 462, 1549, 1625, 2802, 3592
AsuHPI	GGTGA	2 cut(s)	996, 3518
AsuII	TTCGAA	1 cut(s)	1537
AsuNHI	GCTAGC	1 cut(s)	391
AvaI	CYCGRG	1 cut(s)	422
AvaII	GGWCC	6 cut(s)	77, 462, 1549, 1625, 2802, 3592
AxyI	CCTNAGG	1 cut(s)	1751
BaeGI	GKGCMC	2 cut(s)	1707, 3790
BalI	TGGCCA	1 cut(s)	1514
BamHI	GGATCC	2 cut(s)	1073, 1560
BanI	GGYRCC	1 cut(s)	3785
BanII	GRGCYC	4 cut(s)	1770, 2997, 3573, 3647
BauI	CACGAG	1 cut(s)	1935
BbsI	GAAGAC	3 cut(s)	174, 980, 1923
Bbv12I	GWGCWC	5 cut(s)	1707, 2082, 2833, 2997, 3573
BbvCI	CCTCAGC	2 cut(s)	267, 2115
BcgI	CGANNNNNNTGC	2 cut(s)	125, 159
BciT130I	CCWGG	4 cut(s)	81, 1761, 2867, 3225
BclI	TGATCA	1 cut(s)	499
BcoDI	GTCTC	5 cut(s)	162, 421, 1463, 2400, 3826
BcuI	ACTAGT	1 cut(s)	3341
BfmI	CTRYAG	7 cut(s)	396, 444, 1363, 3132, 3276, 3364, 3513
BfoI	RGCGCY	2 cut(s)	367, 1388
BglI	GCCNNNNNGGC	2 cut(s)	1028, 1765
BglII	AGATCT	5 cut(s)	913, 1891, 2401, 2473, 3280
BlpI	GCTNAGC	2 cut(s)	1838, 2061
BmcAI	AGTACT	1 cut(s)	711
Bme1390I	CCNGG	4 cut(s)	81, 1761, 2867, 3225
Bme18I	GGWCC	6 cut(s)	77, 462, 1549, 1625, 2802, 3592
BmeT110I	CYCGRG	1 cut(s)	422
BmgT120I	GGNCC	8 cut(s)	77, 420, 440, 462, 1549, 1625, 2802, 3592
BmiI	GGNNCC	9 cut(s)	1075, 1562, 1627, 2093, 2646, 2803, 2871, 2983, 3787
BmrFI	CCNGG	4 cut(s)	81, 1761, 2867, 3225
BmsI	GCATC	8 cut(s)	392, 1334, 1419, 1447, 2197, 2502, 2565, 3629
BmtI	GCTAGC	1 cut(s)	395
BoxI	GACNNNNGTC	1 cut(s)	2291
BpiI	GAAGAC	3 cut(s)	174, 980, 1923
BpmI	CTGGAG	3 cut(s)	71, 1782, 2452
Bpu10I	CCTNAGC	4 cut(s)	267, 632, 1698, 2115
Bpu1102I	GCTNAGC	2 cut(s)	1838, 2061
Bpu14I	TTCGAA	1 cut(s)	1537
BpuEI	CTTGAG	7 cut(s)	227, 400, 2015, 2066, 2382, 2694, 3141
BsaAI	YACGTR	1 cut(s)	353
BsaBI	GATNNNNATC	2 cut(s)	918, 3426
BsaJI	CCNNGG	8 cut(s)	1482, 1673, 1970, 2816, 2865, 3110, 3223, 3224
BsaWI	WCCGGW	4 cut(s)	10, 104, 1739, 3798
Bsc4I	CCNNNNNNNGG	7 cut(s)	1575, 2790, 2930, 3115, 3116, 3392, 3393
Bse1I	ACTGG	6 cut(s)	54, 893, 1598, 1679, 2535, 3357
Bse21I	CCTNAGG	1 cut(s)	1751
Bse3DI	GCAATG	4 cut(s)	24, 1887, 2810, 2897
Bse8I	GATNNNNATC	2 cut(s)	918, 3426
BseBI	CCWGG	4 cut(s)	81, 1761, 2867, 3225
BseDI	CCNNGG	8 cut(s)	1482, 1673, 1970, 2816, 2865, 3110, 3223, 3224
BseJI	GATNNNNATC	2 cut(s)	918, 3426
BseLI	CCNNNNNNNGG	7 cut(s)	1575, 2790, 2930, 3115, 3116, 3392, 3393
BseMI	GCAATG	4 cut(s)	24, 1887, 2810, 2897
BseMII	CTCAG	9 cut(s)	281, 660, 1006, 1712, 1779, 2075, 2106, 2328, 2573
BseNI	ACTGG	6 cut(s)	54, 893, 1598, 1679, 2535, 3357
BseRI	GAGGAG	2 cut(s)	620, 3479
BseSI	GKGCMC	2 cut(s)	1707, 3790
BseYI	CCCAGC	4 cut(s)	2184, 2619, 3049, 3502
BsgI	GTGCAG	4 cut(s)	1227, 1389, 3366, 3779
Bsh1236I	CGCG	3 cut(s)	681, 2632, 3739
Bsh1285I	CGRYCG	1 cut(s)	15
BshFI	GGCC	7 cut(s)	421, 441, 1514, 1678, 3444, 3675, 3854
BshNI	GGYRCC	1 cut(s)	3785
BsiEI	CGRYCG	1 cut(s)	15
BsiHKAI	GWGCWC	5 cut(s)	1707, 2082, 2833, 2997, 3573
BsiHKCI	CYCGRG	1 cut(s)	422
BsiSI	CCGG	5 cut(s)	11, 105, 1740, 3239, 3799
BslFI	GGGAC	1 cut(s)	1266
BslI	CCNNNNNNNGG	7 cut(s)	1575, 2790, 2930, 3115, 3116, 3392, 3393
BsmAI	GTCTC	5 cut(s)	162, 421, 1463, 2400, 3826
BsmBI	CGTCTC	2 cut(s)	421, 3826
BsmFI	GGGAC	1 cut(s)	1266
BsmI	GAATGC	3 cut(s)	199, 1964, 2772
BsnI	GGCC	7 cut(s)	421, 441, 1514, 1678, 3444, 3675, 3854
BsoBI	CYCGRG	1 cut(s)	422
Bsp119I	TTCGAA	1 cut(s)	1537
Bsp1286I	GDGCHC	8 cut(s)	1707, 1770, 2082, 2833, 2997, 3573, 3647, 3790
Bsp1407I	TGTACA	3 cut(s)	574, 843, 3288
Bsp1720I	GCTNAGC	2 cut(s)	1838, 2061
BspACI	CCGC	6 cut(s)	679, 769, 1576, 1695, 2341, 2703
BspANI	GGCC	7 cut(s)	421, 441, 1514, 1678, 3444, 3675, 3854
BspCNI	CTCAG	9 cut(s)	280, 661, 1005, 1711, 1780, 2074, 2107, 2329, 2572
BspFNI	CGCG	3 cut(s)	681, 2632, 3739
BspHI	TCATGA	2 cut(s)	939, 1009
BspLI	GGNNCC	9 cut(s)	1075, 1562, 1627, 2093, 2646, 2803, 2871, 2983, 3787
BspMAI	CTGCAG	3 cut(s)	400, 3136, 3280
BspOI	GCTAGC	1 cut(s)	395
BspT104I	TTCGAA	1 cut(s)	1537
BspT107I	GGYRCC	1 cut(s)	3785
BsrBI	CCGCTC	3 cut(s)	769, 1697, 2341
BsrDI	GCAATG	4 cut(s)	24, 1887, 2810, 2897
BsrGI	TGTACA	3 cut(s)	574, 843, 3288
BsrI	ACTGG	6 cut(s)	54, 893, 1598, 1679, 2535, 3357
BssECI	CCNNGG	8 cut(s)	1482, 1673, 1970, 2816, 2865, 3110, 3223, 3224
BssNAI	GTATAC	1 cut(s)	237
BssSI	CACGAG	1 cut(s)	1935
BssT1I	CCWWGG	4 cut(s)	1673, 1970, 2816, 3110
Bst1107I	GTATAC	1 cut(s)	237
Bst2BI	CACGAG	1 cut(s)	1935
Bst2UI	CCWGG	4 cut(s)	81, 1761, 2867, 3225
Bst6I	CTCTTC	1 cut(s)	1971
BstAPI	GCANNNNNTGC	3 cut(s)	1711, 3275, 3559
BstAUI	TGTACA	3 cut(s)	574, 843, 3288
BstBAI	YACGTR	1 cut(s)	353
BstBI	TTCGAA	1 cut(s)	1537
BstEII	GGTNACC	1 cut(s)	1745
BstFNI	CGCG	3 cut(s)	681, 2632, 3739
BstH2I	RGCGCY	2 cut(s)	367, 1388
BstHHI	GCGC	4 cut(s)	34, 366, 1387, 3739
BstMAI	GTCTC	5 cut(s)	162, 421, 1463, 2400, 3826
BstMCI	CGRYCG	1 cut(s)	15
BstNI	CCWGG	4 cut(s)	81, 1761, 2867, 3225
BstNSI	RCATGY	4 cut(s)	668, 1481, 2453, 2779
BstPAI	GACNNNNGTC	1 cut(s)	2291
BstPI	GGTNACC	1 cut(s)	1745
BstSCI	CCNGG	4 cut(s)	79, 1759, 2865, 3223
BstSFI	CTRYAG	7 cut(s)	396, 444, 1363, 3132, 3276, 3364, 3513
BstSLI	GKGCMC	2 cut(s)	1707, 3790
BstUI	CGCG	3 cut(s)	681, 2632, 3739
BstV2I	GAAGAC	3 cut(s)	174, 980, 1923
BstXI	CCANNNNNNTGG	1 cut(s)	87
BstZ17I	GTATAC	1 cut(s)	237
Bsu36I	CCTNAGG	1 cut(s)	1751
BsuRI	GGCC	7 cut(s)	421, 441, 1514, 1678, 3444, 3675, 3854
BtgZI	GCGATG	1 cut(s)	150
BtsI	GCAGTG	3 cut(s)	1705, 2273, 3836
BtsIMutI	CAGTG	9 cut(s)	47, 584, 1705, 2273, 2528, 2758, 3350, 3445, 3836
CaiI	CAGNNNCTG	3 cut(s)	1720, 1874, 3275
CciI	TCATGA	2 cut(s)	939, 1009
CfoI	GCGC	4 cut(s)	34, 366, 1387, 3739
Cfr13I	GGNCC	8 cut(s)	77, 420, 440, 462, 1549, 1625, 2802, 3592
CseI	GACGC	2 cut(s)	438, 2199
Csp6I	GTAC	9 cut(s)	307, 575, 710, 844, 958, 1352, 1527, 2706, 3289
CspCI	CAANNNNNGTGG	2 cut(s)	3763, 3798
CviQI	GTAC	9 cut(s)	307, 575, 710, 844, 958, 1352, 1527, 2706, 3289
DraI	TTTAAA	2 cut(s)	2718, 3193
DraIII	CACNNNGTG	1 cut(s)	642
EaeI	YGGCCR	1 cut(s)	1512
Eam1104I	CTCTTC	1 cut(s)	1971
EarI	CTCTTC	1 cut(s)	1971
Ecl136II	GAGCTC	2 cut(s)	2995, 3571
Eco130I	CCWWGG	4 cut(s)	1673, 1970, 2816, 3110
Eco147I	AGGCCT	1 cut(s)	3854
Eco24I	GRGCYC	4 cut(s)	1770, 2997, 3573, 3647
Eco32I	GATATC	3 cut(s)	2440, 3064, 3406
Eco47I	GGWCC	6 cut(s)	77, 462, 1549, 1625, 2802, 3592
Eco47III	AGCGCT	2 cut(s)	365, 1386
Eco53kI	GAGCTC	2 cut(s)	2995, 3571
Eco57I	CTGAAG	3 cut(s)	1305, 1616, 3627
Eco81I	CCTNAGG	1 cut(s)	1751
Eco88I	CYCGRG	1 cut(s)	422
Eco91I	GGTNACC	1 cut(s)	1745
EcoICRI	GAGCTC	2 cut(s)	2995, 3571
EcoO109I	RGGNCCY	2 cut(s)	1549, 3592
EcoO65I	GGTNACC	1 cut(s)	1745
EcoRII	CCWGG	4 cut(s)	79, 1759, 2865, 3223
EcoRV	GATATC	3 cut(s)	2440, 3064, 3406
EcoT14I	CCWWGG	4 cut(s)	1673, 1970, 2816, 3110
EcoT38I	GRGCYC	4 cut(s)	1770, 2997, 3573, 3647
ErhI	CCWWGG	4 cut(s)	1673, 1970, 2816, 3110
Esp3I	CGTCTC	2 cut(s)	421, 3826
FalI	AAGNNNNNCTT	4 cut(s)	687, 719, 1826, 1858
FaqI	GGGAC	1 cut(s)	1266
FbaI	TGATCA	1 cut(s)	499
FblI	GTMKAC	2 cut(s)	236, 2548
FriOI	GRGCYC	4 cut(s)	1770, 2997, 3573, 3647
GlaI	GCGC	4 cut(s)	33, 365, 1386, 3738
GsaI	CCCAGC	4 cut(s)	2188, 2623, 3053, 3506
GsuI	CTGGAG	3 cut(s)	71, 1782, 2452
HaeII	RGCGCY	2 cut(s)	367, 1388
HaeIII	GGCC	7 cut(s)	421, 441, 1514, 1678, 3444, 3675, 3854
HapII	CCGG	5 cut(s)	11, 105, 1740, 3239, 3799
HgaI	GACGC	2 cut(s)	438, 2199
HhaI	GCGC	4 cut(s)	34, 366, 1387, 3739
Hin6I	GCGC	4 cut(s)	32, 364, 1385, 3737
HinP1I	GCGC	4 cut(s)	32, 364, 1385, 3737
HincII	GTYRAC	3 cut(s)	1149, 1887, 3184
HindII	GTYRAC	3 cut(s)	1149, 1887, 3184
HindIII	AAGCTT	2 cut(s)	372, 1835
HpaII	CCGG	5 cut(s)	11, 105, 1740, 3239, 3799
HphI	GGTGA	2 cut(s)	996, 3518
Hpy166II	GTNNAC	9 cut(s)	237, 575, 685, 1149, 1705, 1887, 2268, 2549, 3184
Hpy8I	GTNNAC	9 cut(s)	237, 575, 685, 1149, 1705, 1887, 2268, 2549, 3184
HpyAV	CCTTC	8 cut(s)	1007, 1208, 1540, 1640, 2301, 3256, 3455, 3655
HpyCH4IV	ACGT	3 cut(s)	352, 690, 1354
HpySE526I	ACGT	3 cut(s)	352, 690, 1354
HspAI	GCGC	4 cut(s)	32, 364, 1385, 3737
Ksp22I	TGATCA	1 cut(s)	499
LmnI	GCTCC	1 cut(s)	107
LweI	GCATC	8 cut(s)	392, 1334, 1419, 1447, 2197, 2502, 2565, 3629
MaeII	ACGT	3 cut(s)	352, 690, 1354
MaeIII	GTNAC	7 cut(s)	448, 474, 732, 1439, 1745, 1998, 2938
MbiI	CCGCTC	3 cut(s)	769, 1697, 2341
MfeI	CAATTG	1 cut(s)	123
MhlI	GDGCHC	8 cut(s)	1707, 1770, 2082, 2833, 2997, 3573, 3647, 3790
MlsI	TGGCCA	1 cut(s)	1514
MluNI	TGGCCA	1 cut(s)	1514
MmeI	TCCRAC	1 cut(s)	591
Mox20I	TGGCCA	1 cut(s)	1514
MroXI	GAANNNNTTC	4 cut(s)	699, 1218, 2585, 3009
MscI	TGGCCA	1 cut(s)	1514
MslI	CAYNNNNRTG	3 cut(s)	488, 1641, 2454
Msp20I	TGGCCA	1 cut(s)	1514
MspA1I	CMGCKG	1 cut(s)	3559
MspI	CCGG	5 cut(s)	11, 105, 1740, 3239, 3799
MspR9I	CCNGG	4 cut(s)	81, 1761, 2867, 3225
MunI	CAATTG	1 cut(s)	123
Mva1269I	GAATGC	3 cut(s)	199, 1964, 2772
MvaI	CCWGG	4 cut(s)	81, 1761, 2867, 3225
MvnI	CGCG	3 cut(s)	681, 2632, 3739
NheI	GCTAGC	1 cut(s)	391
NlaIV	GGNNCC	9 cut(s)	1075, 1562, 1627, 2093, 2646, 2803, 2871, 2983, 3787
NmeAIII	GCCGAG	1 cut(s)	1507
NmuCI	GTSAC	4 cut(s)	732, 1439, 1998, 2938
NspI	RCATGY	4 cut(s)	668, 1481, 2453, 2779
NspV	TTCGAA	1 cut(s)	1537
OliI	CACNNNNGTG	1 cut(s)	488
PaeI	GCATGC	2 cut(s)	668, 2453
PagI	TCATGA	2 cut(s)	939, 1009
PasI	CCCWGGG	1 cut(s)	3224
PceI	AGGCCT	1 cut(s)	3854
PciI	ACATGT	1 cut(s)	2775
PctI	GAATGC	3 cut(s)	199, 1964, 2772
PdmI	GAANNNNTTC	4 cut(s)	699, 1218, 2585, 3009
PfeI	GAWTC	8 cut(s)	278, 593, 796, 1126, 1307, 1619, 2054, 3509
Ppu21I	YACGTR	1 cut(s)	353
PpuMI	RGGWCCY	2 cut(s)	1549, 3592
PscI	ACATGT	1 cut(s)	2775
PshAI	GACNNNNGTC	1 cut(s)	2291
PshBI	ATTAAT	1 cut(s)	435
PsiI	TTATAA	1 cut(s)	1359
Psp124BI	GAGCTC	2 cut(s)	2997, 3573
Psp5II	RGGWCCY	2 cut(s)	1549, 3592
Psp6I	CCWGG	4 cut(s)	79, 1759, 2865, 3223
PspEI	GGTNACC	1 cut(s)	1745
PspFI	CCCAGC	4 cut(s)	2184, 2619, 3049, 3502
PspGI	CCWGG	4 cut(s)	79, 1759, 2865, 3223
PspN4I	GGNNCC	9 cut(s)	1075, 1562, 1627, 2093, 2646, 2803, 2871, 2983, 3787
PspPI	GGNCC	8 cut(s)	77, 420, 440, 462, 1549, 1625, 2802, 3592
PspPPI	RGGWCCY	2 cut(s)	1549, 3592
PstI	CTGCAG	3 cut(s)	400, 3136, 3280
PstNI	CAGNNNCTG	3 cut(s)	1720, 1874, 3275
PvuII	CAGCTG	1 cut(s)	3559
RsaI	GTAC	9 cut(s)	308, 576, 711, 845, 959, 1353, 1528, 2707, 3290
RsaNI	GTAC	9 cut(s)	307, 575, 710, 844, 958, 1352, 1527, 2706, 3289
RseI	CAYNNNNRTG	3 cut(s)	488, 1641, 2454
SacI	GAGCTC	2 cut(s)	2997, 3573
Sau96I	GGNCC	8 cut(s)	77, 420, 440, 462, 1549, 1625, 2802, 3592
ScaI	AGTACT	1 cut(s)	711
ScrFI	CCNGG	4 cut(s)	81, 1761, 2867, 3225
SduI	GDGCHC	8 cut(s)	1707, 1770, 2082, 2833, 2997, 3573, 3647, 3790
SfaNI	GCATC	8 cut(s)	392, 1334, 1419, 1447, 2197, 2502, 2565, 3629
SfcI	CTRYAG	7 cut(s)	396, 444, 1363, 3132, 3276, 3364, 3513
SfuI	TTCGAA	1 cut(s)	1537
SinI	GGWCC	6 cut(s)	77, 462, 1549, 1625, 2802, 3592
SmiI	ATTTAAAT	1 cut(s)	2718
SmiMI	CAYNNNNRTG	3 cut(s)	488, 1641, 2454
SmlI	CTYRAG	7 cut(s)	206, 415, 1994, 2081, 2397, 2709, 3156
SmoI	CTYRAG	7 cut(s)	206, 415, 1994, 2081, 2397, 2709, 3156
SpeI	ACTAGT	1 cut(s)	3341
SphI	GCATGC	2 cut(s)	668, 2453
SseBI	AGGCCT	1 cut(s)	3854
SsiI	CCGC	6 cut(s)	679, 769, 1576, 1695, 2341, 2703
SspI	AATATT	3 cut(s)	2368, 3147, 3326
SstI	GAGCTC	2 cut(s)	2997, 3573
StuI	AGGCCT	1 cut(s)	3854
StyD4I	CCNGG	4 cut(s)	79, 1759, 2865, 3223
StyI	CCWWGG	4 cut(s)	1673, 1970, 2816, 3110
SwaI	ATTTAAAT	1 cut(s)	2718
TaiI	ACGT	3 cut(s)	355, 693, 1357
TaqI	TCGA	9 cut(s)	15, 95, 729, 1537, 1956, 2133, 3260, 3475, 3567
TatI	WGTACW	5 cut(s)	574, 709, 843, 957, 3288
TauI	GCSGC	2 cut(s)	772, 1697
TfiI	GAWTC	8 cut(s)	278, 593, 796, 1126, 1307, 1619, 2054, 3509
TscAI	CASTG	9 cut(s)	54, 584, 1712, 2280, 2535, 2758, 3357, 3445, 3843
TseFI	GTSAC	4 cut(s)	732, 1439, 1998, 2938
Tsp45I	GTSAC	4 cut(s)	732, 1439, 1998, 2938
TspGWI	ACGGA	1 cut(s)	1070
TspRI	CASTG	9 cut(s)	54, 584, 1712, 2280, 2535, 2758, 3357, 3445, 3843
VneI	GTGCAC	1 cut(s)	1703
VpaK11BI	GGWCC	6 cut(s)	77, 462, 1549, 1625, 2802, 3592
VspI	ATTAAT	1 cut(s)	435
XapI	RAATTY	5 cut(s)	84, 658, 1271, 1916, 3450
XbaI	TCTAGA	3 cut(s)	2017, 2836, 3460
XceI	RCATGY	4 cut(s)	668, 1481, 2453, 2779
XmiI	GTMKAC	2 cut(s)	236, 2548
XmnI	GAANNNNTTC	4 cut(s)	699, 1218, 2585, 3009
ZrmI	AGTACT	1 cut(s)	711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.